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Properties
| Property Name | Value |
|---|
| TranscriptId | 590626 |
| Track | FilteredModels2 |
| ProteinId | 590540 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:726210..731953 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5852 ID=mRNA_5852|Name=jgi.p|Nanoce1779_2|590540|organism=Nannochloropsis oceanica|type=mRNA|length=924bp
TTGGCGTACATTCTCCAGCTCTTGCTTGCTCACCATGCGGTGCATACCCC
CATCTCACCCCTCCCTACCTCCCTCCCTCCCTTGCTCCAGGCCAAAATGA
ACCTCTTTGGAAAGAAAAAAACAGCAGGCCCCCCGCCAAATCCAGCCGAT
GCGATTATCAAGCTTCGTGGAACCATGGAGACGCTTACAAAACGCGAGGC
GTACATCCAGAAAAAAATGGACATCATGATCGTCGAAGCCAAGGGCAAGA
TGGCCCGCAAAGACAAGAGTGGAGCGTTATTCGCCTTGAAGAAGAAGAAG
ATGTACGAGGCAGAGGTGATCAAGATCCAGGGGGCAATGATGAATTTGGA
GAGCCAAGCCATGTCTCTCGAGGGTTCAGCGACGAATATGGAGGTGTTTG
GAGCCATGAGAAAGGGTGCTCAGGCCATGGGTGCGATGCGAGGGGCGATG
GATGTGGACAAGGTGGACGATCTCATCGACGACATTCGCGAAGAGATGGA
TACAGCCACCCATATATCTGACGCGATCTCCACGCCCTTGGACGGAGGAC
TGCAATCCGATGATGACCTCCTCGCTGAACTTGATGCATTGGTCGAAGAA
GAAACGGAGGCAAAGCTGACGGAGGTCCCGGCGTCCTTGCCAGCCAAGCC
AGCAGCAGCGACAGCAGCGACAACAGCGGCTGCAGCGACTGCAGCTAGCG
AGCCATTCATGCCTGACTTACCTGCGGTGCCGACGAATGCGCCCACCGTG
GCTTTAGGAGAGGAAGGAATAGATGAGGAGGAGCTGAGGGCATTGAAGGA
ATTGGAGAGGAGTATGGCTGTGTAATTTGCTAGGGGGGATGGAGGGAAGG
AGGGAGGTGGAGGGCGGGAGGGAGAAGGAGGAGGAGGATGGGGCGGAGGC
CCTTCCTCCCTCCCTCCCTTCCTC back to topprotein sequence of jgi.p|Nanoce1779_2|590540 >mRNA_5852-protein ID=mRNA_5852-protein|Name=jgi.p|Nanoce1779_2|590540|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MNLFGKKKTAGPPPNPADAIIKLRGTMETLTKREAYIQKKMDIMIVEAKG
KMARKDKSGALFALKKKKMYEAEVIKIQGAMMNLESQAMSLEGSATNMEV
FGAMRKGAQAMGAMRGAMDVDKVDDLIDDIREEMDTATHISDAISTPLDG
GLQSDDDLLAELDALVEEETEAKLTEVPASLPAKPAAATAATTAAAATAA
SEPFMPDLPAVPTNAPTVALGEEGIDEEELRALKELERSMAV* back to topmRNA from alignment at scaffold_11:726210..731953- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5852 ID=mRNA_5852|Name=jgi.p|Nanoce1779_2|590540|organism=Nannochloropsis oceanica|type=mRNA|length=5744bp|location=Sequence derived from alignment at scaffold_11:726210..731953- (Nannochloropsis oceanica)
TTGGCGTACATTCTCCAGCTCTTGCTTGCTCACCATGCGGTGCATACCCC
CATCTCACCCCTCCCTACCTCCCTCCCTCCCTTGCTCCAGGCCAAAATGA
ACCTCTTTGGAAAGAAAAAAACAGCAGGCCCCCCGCCAAATCCAGCCGAT
GCGATTATCAAGCTTCGTGGAACCATGGAGACGCTTACAAAACGCGAGGC
GTACATCCAGAAAAAAATGGACATCATGATCGTCGAAGCCAAGGGCAAGA
TGGCCCGCAAAGACAAGAGTGGAGCGTTATTCGCCTTGAAGAAGAAGAAG
ATGTACGAGGCAGAGGTGATCAAGATCCAGGGGGCAATGATGAATTTGGA
GAGCCAAGCCATGTCTCTCGAGGGTTCAGCGACGAATATGGAGGTGTTTG
GAGCCATGAGGTAAGAGGAAGAGGAGGAAGGGAAAAAGGGAGGGGAAGGA
AATCAGAAAAATAGAACGTTTAGAAGATGGCTCTAATGCATGCACGTATT
AAAAATCTGTCTTTCACAAACAAACAGAAAGGGTGCTCAGGCCATGGGTG
CGATGCGAGGGGCGATGGATGTGGACAAGGTGGACGATCTCATCGACGAC
ATTCGCGAAGAGATGGATACAGCCACCCATATATCTGACGCGATCTCCAC
GCCCTTGGACGGAGGACTGCAATCCGATGATGACCTCCTCGCTGAACTTG
ATGCATTGGTCGAAGAAGAAACGGAGGCAAAGCTGACGGAGGTCCCGGCG
TCCTTGCCAGCCAAGCCAGCAGCAGCGACAGCAGCGACAACAGCGGCTGC
AGCGACTGCAGCTAGCGAGCCATTCATGCCTGACTTACCTGCGGTGCCGA
CGAATGCGCCCACCGTGGCTTTAGGAGAGGAAGGAATAGATGAGGAGGAG
CTGAGGGCATTGAAGGAATTGGAGAGGAGTATGGCTGTGTAATTTGCTAG
GGGGGATGGAGGGAAGGAGGGAGGGAGAAGTTTCCGGAGGAGGGAGGGGT
ACATAGTCTTGTTGGAGTGGGAAGGGGATCAGGTGAATGATCGTATGAAC
AAAAAAGCAAAAAAATCACGTGGATGGTTAAGAAGCTTGAGCTCATGGGT
AAAAGCATAGCTGGTTTGTGATGGGAATCCACTCATTTTCTCGTTTTTTT
TCAACTTTCACTATGTCTCGATTGCACGTGCGTCACACCTTCGGACCCGC
GGGCGTGTGTCAGAATTACTTCTGCAGCCGTCGACAACATCATGACGCTT
TCCAATGCCTGGATGAAGCCTTGCTGCGCTTCTCTCAGCTCTGGAGGCGC
TAATCCACCCGCCATGATCAGAAGTAGATCCTCGAGTTTGGTTGGGGGGG
TGTCATCATCTTCGCCCTTGTCCTCGTTGTCCTTGTGATTTCCTTTGTCT
GCTACCCCGATGGTCACAACCTTGTTCTTCTTAACGCGCCGTGTTGCTCC
CAAGTATTCACGGCAAAAGTCACTACCCATCATGCCTCCGGCTCCCATCC
GCATCCGTGCTCGGGCGAGTAGGAGAAAGGCCTTTTTGAGCTGCATGCCC
AGGGTCTCTTGGGCCTCGAGGTACTGCGCTGACGCATCGTAGGCGTCCAG
AATACTATTGATAGTGGCGGCGGAGGAGGGAGGCCGAGGGAAGGAGCTCG
TCTTAATAGTGTTGTCGGCCATGCTGTTGGGCCGCGATGGGGAGTTGGGG
GTGGGGAGGTGAGGCAAAGCTAGAGCGTCCGCTTATTCGAGCCTGAGGCC
TTGAATGTCTTGCTTGGCTGCATCAGTCCGCCGCAAAATTCCTTGCCCTA
CTCATGTAGTTGCCTTTTGTAAGAAATTGTATGATAACCAGCAGAGGAGA
AATATGCCCTCGCAATAATCTGTCATCATCGCCGTCTCGCCAAGCCGCGC
TTTCTTTCAGCTTCGCTTCTTCTCCCGCACATCTCCTGTCTGTTTGTTCG
TCCGCTTCACTTCCCTTTTTGACCACTCACAAAATTCAAACCATTACAAG
CGCGCACTGAAAAGTGCCACTGTCCTGGGTAGGTTGGAATGGCCCTCCCG
CCGCTCCCCAGGATCCAGGAGGACTTTGCACAGAAGCTTACGCTAGAGGT
TGATGTCGACCCGACGCCACCCCCATTGACCATCGGGACGGGCACGGCCT
TTAGTCCCTTACGCCTGGAGATCGCCACAGGGAGTAGCAGCAGTGGGTGC
GGGAGCGACGATAGCGGATGTGGCGGTAACCGGCAACACGATGGCAGCAA
CGGCGGGGCCACGTCAGGGGGGGGGTCGTCGGGCGGAATGTCCTCGTCCT
CGAAGCGCAGACACGCCACCAGCAACAAGAGCGACTCCAAGACGCTTAGT
ATTTCCAAGAGCGGCTCCATCCATATCGCTGGCTTCGAGATCCGCAAGTC
TGGACTGACCCAGACAAGCCAGCCAATATACTACAAACACAACAGCAGCA
TTGGCGGGCAGCTTTCCACCACGCCCTCCTCCGGCTCCTGGGGAGAGAGC
AGTAATGGCGCCGCCTCCCCCTCCTTCATCTTGAGTAATGGCCCTGGCCG
TTCTGGTGAGCCCATGTCCCCATTTTCCACAAATGACAGTGGTCGCAACA
TGCCCAGCGTTAGCGTGAGCAATGACACTCAAAGTTTACAAGACGCGTTG
GCACCCTTGGCCGTGCTAGGGCGAGGGACAGGTGGCACTGTTTGGCAAGG
TATCCACGTTCCCAGCCTGCGCTTGGTGGCTGTGAAAACCATTCTGGTGT
TTGAAGAAGGAAGGCGGCATCAGATGGTGAGAGAACTGAGAGCTCTATAC
GCAAATTTAGCTCCGTTAGGCCGGCCTACTCCTACTCCTCCTGCTGGTGC
TGCTGCCGCTGCAGCACCAGCAGGAACAGGGTATCCGTCAAAAAATTGTC
GGAAAGGCAGTGGGAAGGGTAAAGCCCAGAGGAAAACCGCAGTAGAGCAT
GAGGATTTGTTCGCAGGAGGGTTAAGTAAAGAGGCGGCTGCTGCGGCCGC
CGCGGCTGCGGCTGCCGTTGGCAAGACTCCACCTACACAAGCAACAGCAG
CAGCAGCAGTAGCGGCGGCGGCGACAGCTGGATGTCCCCAATTGGTATCG
TTTTATGACGCGTACGTCAGCCCTACTGAAGGGACCGTGAGCATCGTCCA
GGAATACATGGATGGAGGCTCACTGCAAGAAATAGTCGATGGCGGGGGCT
GTGCTGCCGAAGCCGTCCTGTCCCATATCGCCCGCGAGGTCCTGGAGGGG
CTGGCCTTCCTGCATGAACGGCGACAGATCCATCGTGACATCAAGCCGGC
CAACCTCCTGCTCAATCACAAGGGGCAGGTCAAAATTAGCGACTTTGGCT
TGGTCCGCCACCTGGATTCCTCTATTTCCCAGGCGGACACATTTGTGGGG
ACTTTTACGTACATGTCGCCAGAACGCATCTGCGGAGAAGAGTACAGCTA
TTCCGCCGACGTCTGGGGCGTGGGATTGACGCTTGTCACATGCGCCATGG
GCCGGTTTCCTTACGATCACTCAGGAGGGTATTGGGGGCTGGTCTCGGCG
TTGAGGGAGATGGACTCTCCTTCCCTCCCGCCCTCGTTCTCCCCTTCTTT
TCGAGATTTTGTGCGGCAGTGTTTGAATAAAGATCCGAAGAAGAGGCCGA
CGGCCAGGTATCTGTTAAAGCACCATCCATTTTTGCAGAGGGGAGGGGAG
GGAGGAAGAGAGGGAGGGAGCCGATGGGTTGTCCCTCCGGCATCGCCGGG
GGGGTATGGGGCCGAGGAGGAGGAGGAGGAAGAGGAGGAGGGAGGGATGG
GAGGGGGGTCGGTGAGCGCGAGGAGAGAATTGATGGATATAGTGCAGGTC
GTGAAGGCGTACTACCGTCGTTTGTGGAACGACAGCAGCAGCAGCAGCTG
CAGTAGTAGTAATAGTAGTACTAGTAGTAGAACTAGTACTAGTACTAGTG
GTAGCAGGAGTGGTGGTGCCCAAGGAGGAATATTGTTGTTGCCTAATACG
CAAGCACAGGCCTTAGCGGGGCTGGCGAGGCAGCTGGGGGTGCCATCGAG
GGTCGTGAGGGAGGCGTTTCGAATGATGCTGAGAGAGCTGATCGAGGAGC
AGGTGGAGGGCGGGAGGGAGAAGGAGGAGGAGGATGGGGCGGAGGCAAGA
AGGAGGAGAGGGAGTGAGTAAGTGAGTGCAGATTTTTTTCCTTCTTCCTT
CAATAAGAGATATGGAAACGGGAGATATTGAGGGGAAAAGGGAGGGACAC
ATACAGGCATGACGTGAATATCTTCATAAATATACATATATTATGTACAC
ACACACACATATTATCTTTCAACACTAGAGTCTGAACGAAAACACTAGGA
AGTGAATCATAGACTTTTTGGAAAGTAGCGTCGGGAAGACCGGCTGTTGC
TCTCGATGCTGTGAGCCGTCTGTGATGTTGGTGTTGTTTGCGGTTGTGGT
GGTGTTGTTTTGTTTGCCATTCTTTTATTTTTTTTTGTTATTTTTGCCGG
GTTTGCTCTCCGTGTTGTGAGTCGTAAAATGTTGTTTGCGTTGTTGCTAT
TGTCTCCCCCCTTCCCTTTCTATTTAATGCTATTTAATGCAAGCCGAGCT
CTTGGATCTGACCGACAGTAGCTTCCTCTCCGCACGCGAGAAGAAGAAAG
GATGAGAGCTGCTGTTGTTCTTGTCCTTGATTGGTTGACTCTCATTTTCT
CTCATTTCACTTGATTGCCTAAGTCTTCCTTCTTCATATCCCTCATCTTT
TCGACCTCGTCGCCATGCCACACACACACACACACTACACACGATCACTC
TCTATCTTTCTCCTGCTCCTTCCTCCCTCCCCCTTCTGCATCATCGTTCG
TGCCCGCACACACCATTGACACGCACAAACGACGAAAAAGCGACACAAGT
CTCTAAAAAGCGATCCCTTCCTTGCCATCCATCTCAATCCCCGTCATGTT
CACCATCTCCTGCTGCATACCTTTCCCCTTTCAAAGGTCCTCAATCAAGA
CACAGTACAGGGAGGGAGGGAGGAAGGGAATGAGGGAGGGAGGGAGGGAG
GGAGGGCAGACCTACGACTCAAGAGGTGGCAAACTGACTCCCGCCTCCTC
ATCCGTTTCAATCCCCATTACATCCACTATGTCTTTCACCCTCTTCCCCG
CCCCCTCCGCCACACTGGCCACGACCTCCATCGCCCCCCTCTTCCTCCCC
ACCCACAGACTCCTCATCTTGGTCATCTCCTTAACCAAGCCTGCTACCTG
CGTCGTATCCAACATTACCCTCCCTCCCTCCTTCCCTCCCTCGGTGCCCC
GCATCGCGCTAAGTTTCTTCTCTCTCCCCTCATTCTCCTCTTTCAGGGCC
AACAACGCCCTTTTCAACGTCTCGTTATCCATCCCCCCACTCAACCCCCT
AACCTCCCCCTCCGCCTTCCCCTTCCTTCCTCCCCACTTCGCCTTTTCCT
CCTGCAGTGCCTTCACACGCGCATCCAACGCCGCTGTTTCTCGTGCCAGG
GATGAGGGATCAAGGGAGGGAGGGGGGGCGACATATACCTTTGCCTTGCC
CATCTCCTTTCGGGTTATGCTCCCTTCGTCAGCCAGCTTGTCGAGAATGG
TCTGTACGGTGGCCTGGACGGAAGGCGGGAAGGAGGGAAGGGGGGTGAGA
TTGACAAGCTGGATCTCGTTCATCACAACTGCCGGAAAAAACTCCGTTTG
GCCCCCTTCCTTCCTTCGTCCCTTCCTCCCTCCCTCCCTTCCTC back to topCoding sequence (CDS) from alignment at scaffold_11:726210..731953- >mRNA_5852 ID=mRNA_5852|Name=jgi.p|Nanoce1779_2|590540|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_11:726210..731953- (Nannochloropsis oceanica)
AAAGGGTGCTCAGGCCATGGGTGCGATGCGAGGGGCGATGGATGTGGACA
AGGTGGACGATCTCATCGACGACATTCGCGAAGAGATGGATACAGCCACC
CATATATCTGACGCGATCTCCACGCCCTTGGACGGAGGACTGCAATCCGA
TGATGACCTCCTCGCTGAACTTGATGCATTGGTCGAAGAAGAAACGGAGG
CAAAGCTGACGGAGGTCCCGGCGTCCTTGCCAGCCAAGCCAGCAGCAGCG
ACAGCAGCGACAACAGCGGCTGCAGCGACTGCAGCTAGCGAGCCATTCAT
GCCTGACTTACCTGCGGTGCCGACGAATGCGCCCACCGTGGCTTTAGGAG
AGGAAGGAATAGATGAGGAGGAGCTGAGGGCATTGAAGGAATTGGAGAGG
AGTATGGCTGTGTAAATGAACCTCTTTGGAAAGAAAAAAACAGCAGGCCC
CCCGCCAAATCCAGCCGATGCGATTATCAAGCTTCGTGGAACCATGGAGA
CGCTTACAAAACGCGAGGCGTACATCCAGAAAAAAATGGACATCATGATC
GTCGAAGCCAAGGGCAAGATGGCCCGCAAAGACAAGAGTGGAGCGTTATT
CGCCTTGAAGAAGAAGAAGATGTACGAGGCAGAGGTGATCAAGATCCAGG
GGGCAATGATGAATTTGGAGAGCCAAGCCATGTCTCTCGAGGGTTCAGCG
ACGAATATGGAGGTGTTTGGAGCCATGAGAAAGGGTGCTCAGGCCATGGG
TGCGATGCGAGGGGCGATGGATGTGGACAAGGTGGACGATCTCATCGACG
ACATTCGCGAAGAGATGGATACAGCCACCCATATATCTGACGCGATCTCC
ACGCCCTTGGACGGAGGACTGCAATCCGATGATGACCTCCTCGCTGAACT
TGATGCATTGGTCGAAGAAGAAACGGAGGCAAAGCTGACGGAGGTCCCGG
CGTCCTTGCCAGCCAAGCCAGCAGCAGCGACAGCAGCGACAACAGCGGCT
GCAGCGACTGCAGCTAGCGAGCCATTCATGCCTGACTTACCTGCGGTGCC
GACGAATGCGCCCACCGTGGCTTTAGGAGAGGAAGGAATAGATGAGGAGG
AGCTGAGGGCATTGAAGGAATTGGAGAGGAGTATGGCTGTGTAAATGAAC
CTCTTTGGAAAGAAAAAAACAGCAGGCCCCCCGCCAAATCCAGCCGATGC
GATTATCAAGCTTCGTGGAACCATGGAGACGCTTACAAAACGCGAGGCGT
ACATCCAGAAAAAAATGGACATCATGATCGTCGAAGCCAAGGGCAAGATG
GCCCGCAAAGACAAGAGTGGAGCGTTATTCGCCTTGAAGAAGAAGAAGAT
GTACGAGGCAGAGGTGATCAAGATCCAGGGGGCAATGATGAATTTGGAGA
GCCAAGCCATGTCTCTCGAGGGTTCAGCGACGAATATGGAGGTGTTTGGA
GCCATGAG back to top
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