jgi.p|Nanoce1779_2|591445, mRNA_5116 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591445
Unique Name	mRNA_5116
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1704
Alignment location	scaffold_12:507444..509147 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591531
Track	FilteredModels2
ProteinId	591445

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:507444..509147 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591445	gene_5116	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591445	mRNA_5116-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5116	CDS_5116	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:507444..509147+
coding sequence from alignment at scaffold_12:507444..509147+

mRNA sequence

>mRNA_5116 ID=mRNA_5116|Name=jgi.p|Nanoce1779_2|591445|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp
AACAACGACAACATCACGTGCACCTTGATGGAGTGTGGTCCGAGTTGGGT
AGCCCTACGCTGGGGGTAGGGATGGGCATGGGAGGAATGGAAGACGCGTT
TGGCCGCTTCCCTCTAACGGGGACCACGCCGAAGAGCCATCATCATCCGA
TGCATCTCACCTGTTTGGGCGAGCAAGAGCTGCAGCACCAGGTGGCGGAG
GAGCAGGCTCAGAGGGCCGAAAAGATTATCTCTCGCTCAGCGTGGGCAAG
CGATATAGCAGTGGTGCTTGTCTCCCGTTTGTCCCAGCATGCTGTGGCAG
GAGGAGCGGCCTCCCCCCGGAAAGGCAGGGGAGTGGAGCCTGAGGACGAG
GGGGTGTATTTCGTAAAGAATGTCACTCCTGATGGGAAGCAAGATCCCAA
GGGATCGCTTCGTGAGCTGCATCGTGTCGCGGATCACATTCAGGTCCTCT
CCGGCTCTTCCTCTTCTGTCCCTCAACAGATGATCTCGACCCTCGGCGGT
GGAAGAAAAGCAGGAGGCCAGCCATCAGTGTTGCTCGATCAGTATGCTCA
CACGTTAGGCTTGAGCCGCGATGCCTACACGCAAGAAGATGTGGAGGTGG
AGGGAGTGTTGGAGGGCCGCACACGTCCGGCGCAATGCTTGATGGTGGGT
TGGAACCCTACAGGTCCCGGAAACTTGGCAGTTGGGGAAGGGGGAATGTT
GGAAGTGAAGTTTCCTCATCGTCCTTCGGGGACCTTGACCCTGTCGGAGG
GACAGGCAGCTTTGGTGATGCGGCCTTTGGGATCGGGTACGGGGGCGTGG
ATGGAGATGACGTTGAATGAGTTCGCGAGGCAGGGGCAGAGGTTGTGCAC
CGGAGATCTGCTCGCGCTGCTGGTCGGGGCAGTGATGAAAGCGCGGCGGG
ATGCGGTGCTTGTATCAAGGAAGGATGGAGAGGGGGTGTCCTATGACCCT
GATCAGTGCTTGTCGAACCCTGGCTATGACTTGCCGTTGGAAGTGCTGGA
GGGTCCCTTGACCGCGCTTGTTTCTGACCCTCGCGCTGCCTTCAAAGTGG
CTTCGTTTTTTTTGGGCGGGCGAGTGGATGAGCAGGGCCGAGCGCGCTTT
ACTCCTGCAGCATTCGTGCATTTCTGCAACTGTTTTATGGCGTCCCAGGA
TTTGTTTGGCACCGCTTTCAAAGTGTGGGAGGATTTGGGCAGTTTGCCTT
CTGGAGTGGAATTTCGTCGCTTTGAGGGACAGATGGAGGGTGGTAAAGGA
TGCTTCCTCCACCTCTCCGACGTGGCGCCTTGCATGGTGTTGGACTGGTA
CTCCACAGAGCAGACCTCCTCGCGCTCCTCCCCTGCCTCTCCCCCTCCTG
CGCCCAGGCCCAAGGGCCTCCTTCTCCGGTGGGCAGACGGAGGAAGCGAG
GGAAGATTGGTGTGGGAGGTGGAGGAGCCGCAACTGAAGGCCTTATTGAC
CGAGCAGGCGACGGTTTTGGGGCTTGACCCCACGAGCTTGTCGGGTCTGG
TTACGGCGGCGCAGGAATTGAGAAACGGCATCGGTGAGAAGGCGGGCCAA
TTTAATGAGATATTAATTGCGGTAGGGAAGCAACAGGCCTCGCGGCGGTA
CATCGGGGTGTCAATCTGCTAATGAAGAGGGCTGCTTATAAAGAGGGAAA
AGATTGGAACTGAGGGACATACATGTCTTTGCGCGCGCAGCAGCAGCAGC
AGCA

protein sequence of jgi.p|Nanoce1779_2|591445

>mRNA_5116-protein ID=mRNA_5116-protein|Name=jgi.p|Nanoce1779_2|591445|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MGMGGMEDAFGRFPLTGTTPKSHHHPMHLTCLGEQELQHQVAEEQAQRAE
KIISRSAWASDIAVVLVSRLSQHAVAGGAASPRKGRGVEPEDEGVYFVKN
VTPDGKQDPKGSLRELHRVADHIQVLSGSSSSVPQQMISTLGGGRKAGGQ
PSVLLDQYAHTLGLSRDAYTQEDVEVEGVLEGRTRPAQCLMVGWNPTGPG
NLAVGEGGMLEVKFPHRPSGTLTLSEGQAALVMRPLGSGTGAWMEMTLNE
FARQGQRLCTGDLLALLVGAVMKARRDAVLVSRKDGEGVSYDPDQCLSNP
GYDLPLEVLEGPLTALVSDPRAAFKVASFFLGGRVDEQGRARFTPAAFVH
FCNCFMASQDLFGTAFKVWEDLGSLPSGVEFRRFEGQMEGGKGCFLHLSD
VAPCMVLDWYSTEQTSSRSSPASPPPAPRPKGLLLRWADGGSEGRLVWEV
EEPQLKALLTEQATVLGLDPTSLSGLVTAAQELRNGIGEKAGQFNEILIA
VGKQQASRRYIGVSIC*

mRNA from alignment at scaffold_12:507444..509147+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5116 ID=mRNA_5116|Name=jgi.p|Nanoce1779_2|591445|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at scaffold_12:507444..509147+ (Nannochloropsis oceanica)
AACAACGACAACATCACGTGCACCTTGATGGAGTGTGGTCCGAGTTGGGT
AGCCCTACGCTGGGGGTAGGGATGGGCATGGGAGGAATGGAAGACGCGTT
TGGCCGCTTCCCTCTAACGGGGACCACGCCGAAGAGCCATCATCATCCGA
TGCATCTCACCTGTTTGGGCGAGCAAGAGCTGCAGCACCAGGTGGCGGAG
GAGCAGGCTCAGAGGGCCGAAAAGATTATCTCTCGCTCAGCGTGGGCAAG
CGATATAGCAGTGGTGCTTGTCTCCCGTTTGTCCCAGCATGCTGTGGCAG
GAGGAGCGGCCTCCCCCCGGAAAGGCAGGGGAGTGGAGCCTGAGGACGAG
GGGGTGTATTTCGTAAAGAATGTCACTCCTGATGGGAAGCAAGATCCCAA
GGGATCGCTTCGTGAGCTGCATCGTGTCGCGGATCACATTCAGGTCCTCT
CCGGCTCTTCCTCTTCTGTCCCTCAACAGATGATCTCGACCCTCGGCGGT
GGAAGAAAAGCAGGAGGCCAGCCATCAGTGTTGCTCGATCAGTATGCTCA
CACGTTAGGCTTGAGCCGCGATGCCTACACGCAAGAAGATGTGGAGGTGG
AGGGAGTGTTGGAGGGCCGCACACGTCCGGCGCAATGCTTGATGGTGGGT
TGGAACCCTACAGGTCCCGGAAACTTGGCAGTTGGGGAAGGGGGAATGTT
GGAAGTGAAGTTTCCTCATCGTCCTTCGGGGACCTTGACCCTGTCGGAGG
GACAGGCAGCTTTGGTGATGCGGCCTTTGGGATCGGGTACGGGGGCGTGG
ATGGAGATGACGTTGAATGAGTTCGCGAGGCAGGGGCAGAGGTTGTGCAC
CGGAGATCTGCTCGCGCTGCTGGTCGGGGCAGTGATGAAAGCGCGGCGGG
ATGCGGTGCTTGTATCAAGGAAGGATGGAGAGGGGGTGTCCTATGACCCT
GATCAGTGCTTGTCGAACCCTGGCTATGACTTGCCGTTGGAAGTGCTGGA
GGGTCCCTTGACCGCGCTTGTTTCTGACCCTCGCGCTGCCTTCAAAGTGG
CTTCGTTTTTTTTGGGCGGGCGAGTGGATGAGCAGGGCCGAGCGCGCTTT
ACTCCTGCAGCATTCGTGCATTTCTGCAACTGTTTTATGGCGTCCCAGGA
TTTGTTTGGCACCGCTTTCAAAGTGTGGGAGGATTTGGGCAGTTTGCCTT
CTGGAGTGGAATTTCGTCGCTTTGAGGGACAGATGGAGGGTGGTAAAGGA
TGCTTCCTCCACCTCTCCGACGTGGCGCCTTGCATGGTGTTGGACTGGTA
CTCCACAGAGCAGACCTCCTCGCGCTCCTCCCCTGCCTCTCCCCCTCCTG
CGCCCAGGCCCAAGGGCCTCCTTCTCCGGTGGGCAGACGGAGGAAGCGAG
GGAAGATTGGTGTGGGAGGTGGAGGAGCCGCAACTGAAGGCCTTATTGAC
CGAGCAGGCGACGGTTTTGGGGCTTGACCCCACGAGCTTGTCGGGTCTGG
TTACGGCGGCGCAGGAATTGAGAAACGGCATCGGTGAGAAGGCGGGCCAA
TTTAATGAGATATTAATTGCGGTAGGGAAGCAACAGGCCTCGCGGCGGTA
CATCGGGGTGTCAATCTGCTAATGAAGAGGGCTGCTTATAAAGAGGGAAA
AGATTGGAACTGAGGGACATACATGTCTTTGCGCGCGCAGCAGCAGCAGC
AGCA

Coding sequence (CDS) from alignment at scaffold_12:507444..509147+

>mRNA_5116 ID=mRNA_5116|Name=jgi.p|Nanoce1779_2|591445|organism=Nannochloropsis oceanica|type=CDS|length=1551bp|location=Sequence derived from alignment at scaffold_12:507444..509147+ (Nannochloropsis oceanica)
ATGGGCATGGGAGGAATGGAAGACGCGTTTGGCCGCTTCCCTCTAACGGG
GACCACGCCGAAGAGCCATCATCATCCGATGCATCTCACCTGTTTGGGCG
AGCAAGAGCTGCAGCACCAGGTGGCGGAGGAGCAGGCTCAGAGGGCCGAA
AAGATTATCTCTCGCTCAGCGTGGGCAAGCGATATAGCAGTGGTGCTTGT
CTCCCGTTTGTCCCAGCATGCTGTGGCAGGAGGAGCGGCCTCCCCCCGGA
AAGGCAGGGGAGTGGAGCCTGAGGACGAGGGGGTGTATTTCGTAAAGAAT
GTCACTCCTGATGGGAAGCAAGATCCCAAGGGATCGCTTCGTGAGCTGCA
TCGTGTCGCGGATCACATTCAGGTCCTCTCCGGCTCTTCCTCTTCTGTCC
CTCAACAGATGATCTCGACCCTCGGCGGTGGAAGAAAAGCAGGAGGCCAG
CCATCAGTGTTGCTCGATCAGTATGCTCACACGTTAGGCTTGAGCCGCGA
TGCCTACACGCAAGAAGATGTGGAGGTGGAGGGAGTGTTGGAGGGCCGCA
CACGTCCGGCGCAATGCTTGATGGTGGGTTGGAACCCTACAGGTCCCGGA
AACTTGGCAGTTGGGGAAGGGGGAATGTTGGAAGTGAAGTTTCCTCATCG
TCCTTCGGGGACCTTGACCCTGTCGGAGGGACAGGCAGCTTTGGTGATGC
GGCCTTTGGGATCGGGTACGGGGGCGTGGATGGAGATGACGTTGAATGAG
TTCGCGAGGCAGGGGCAGAGGTTGTGCACCGGAGATCTGCTCGCGCTGCT
GGTCGGGGCAGTGATGAAAGCGCGGCGGGATGCGGTGCTTGTATCAAGGA
AGGATGGAGAGGGGGTGTCCTATGACCCTGATCAGTGCTTGTCGAACCCT
GGCTATGACTTGCCGTTGGAAGTGCTGGAGGGTCCCTTGACCGCGCTTGT
TTCTGACCCTCGCGCTGCCTTCAAAGTGGCTTCGTTTTTTTTGGGCGGGC
GAGTGGATGAGCAGGGCCGAGCGCGCTTTACTCCTGCAGCATTCGTGCAT
TTCTGCAACTGTTTTATGGCGTCCCAGGATTTGTTTGGCACCGCTTTCAA
AGTGTGGGAGGATTTGGGCAGTTTGCCTTCTGGAGTGGAATTTCGTCGCT
TTGAGGGACAGATGGAGGGTGGTAAAGGATGCTTCCTCCACCTCTCCGAC
GTGGCGCCTTGCATGGTGTTGGACTGGTACTCCACAGAGCAGACCTCCTC
GCGCTCCTCCCCTGCCTCTCCCCCTCCTGCGCCCAGGCCCAAGGGCCTCC
TTCTCCGGTGGGCAGACGGAGGAAGCGAGGGAAGATTGGTGTGGGAGGTG
GAGGAGCCGCAACTGAAGGCCTTATTGACCGAGCAGGCGACGGTTTTGGG
GCTTGACCCCACGAGCTTGTCGGGTCTGGTTACGGCGGCGCAGGAATTGA
GAAACGGCATCGGTGAGAAGGCGGGCCAATTTAATGAGATATTAATTGCG
GTAGGGAAGCAACAGGCCTCGCGGCGGTACATCGGGGTGTCAATCTGCTA
A

Synonyms

Publications