jgi.p|Nanoce1779_2|591985, mRNA_5277 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591985
Unique Name	mRNA_5277
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1302
Alignment location	scaffold_13:47195..48853 -

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Properties


Property Name	Value
TranscriptId	592071
Track	FilteredModels2
ProteinId	591985

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:47195..48853 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591985	gene_5277	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591985	mRNA_5277-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5277	CDS_5277	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:47195..48853-
coding sequence from alignment at scaffold_13:47195..48853-

mRNA sequence

>mRNA_5277 ID=mRNA_5277|Name=jgi.p|Nanoce1779_2|591985|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp
ACAACAGCATGCCGCCTTCGTCCAACAATACCGTGGGCTCGTCGTCGTCC
AACCCAAAGAAGCGCAAGAAGGAGATGAAGAAGCGGAACAAACAAAGGGA
TAAGAAGGAGGCGGTCGCCAACAAGCATCATCACAAGAAGCGTAAGCACA
GGGAGCACAAGGAGTCCCGACGCAGCAGCAGTGGCAAGCGCAATATTTTT
GGGCTGCACGTGTATTTGATTGTCCTGACTGTGGTATCCGTGATGATAAC
TAGCATGGGTGTGTATTATTACAAGAAGACCACCCGAAGCCTGATGCCTC
CCGCGGGAGTACTATTCCCTGGTACAAAGGCACCAAGCACATGCTCAGAA
GAAGGACAACAAGAACGAGAATTGCCAACACAACCTCGAGTATACTTGAG
TCACCACTGGCCTTTGGTAATGAGGTTGGCATTTAATTTTCAGAGAATCC
TAACGCGTGTGATCGAGTCACCCTTCTTCCCAGAAGCCCGTGCCACGCGC
CTAAGAAGCAGGGCCTTGCAAGAAATGCGGCTGAATGATGAACCCCTTCA
AGACGATCCCCCGTATCGCCCTTTCCCTGGGTATGCTCCTCGACCTCGCT
TTCGAGCCGTTGCGGAGAAACACCTGCAGGCGCAAAGAGAGCAGCATCGG
GCTGCCTTGCGTGCAGTCCAGCCTTTGATGTTAAATGGTCACGAGCAAGA
CTGCGTTAGCCCCCGCTGTCTCTCAGACGGCTCCTTTCCGTTTTTTCGGT
GGCTTGAGAATCAGCAACGGCGACTGATCAGCGCACAGAGTCTATGCAAT
TTTATTCTGCAATGGGGCAAAGGAGAGCTGGAATTGGAGGCGTCCAAATT
AAGCGGGATGCATGAAGCCAGCGCTCGACAGCTTTGAGCATGGCTTTGGC
ATGTATGAAAATATATACCTTTCTGGACTCTTGTTATTAGGGCGCTATTT
TGCTGTCAAGTTTTGCTTTTTGTGATTGTTTTGGGCCCCGCCTCTCTCCA
CCTCCGCAGAAGGGGGACAGCTCGAATCGGTTTGGCACGGGATCATCGCG
AAAACTACACATGACGGCGGTCTCTACAATGAATGAACCCACGTTAATCA
CCACTTTCACCATCACCTTAGCAACAACGATAACAATGATGACGTCCTGA
TTCTCCGAGCGGTGGCGGTGCCCTAGGCAGAGGAGGGAGGGTGGCTGGAT
CATCATCACAATTATTATCACCATCGTGCGGGGAGGAGTCGTCGTGGCCT
ATTCCCCCACCGCCCACACGGCGACAAATCCTTACTTACTTTACATACAC
AC

protein sequence of jgi.p|Nanoce1779_2|591985

>mRNA_5277-protein ID=mRNA_5277-protein|Name=jgi.p|Nanoce1779_2|591985|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MPPSSNNTVGSSSSNPKKRKKEMKKRNKQRDKKEAVANKHHHKKRKHREH
KESRRSSSGKRNIFGLHVYLIVLTVVSVMITSMGVYYYKKTTRSLMPPAG
VLFPGTKAPSTCSEEGQQERELPTQPRVYLSHHWPLVMRLAFNFQRILTR
VIESPFFPEARATRLRSRALQEMRLNDEPLQDDPPYRPFPGYAPRPRFRA
VAEKHLQAQREQHRAALRAVQPLMLNGHEQDCVSPRCLSDGSFPFFRWLE
NQQRRLISAQSLCNFILQWGKGELELEASKLSGMHEASARQL*

mRNA from alignment at scaffold_13:47195..48853-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5277 ID=mRNA_5277|Name=jgi.p|Nanoce1779_2|591985|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp|location=Sequence derived from alignment at scaffold_13:47195..48853- (Nannochloropsis oceanica)
ACAACAGCATGCCGCCTTCGTCCAACAATACCGTGGGCTCGTCGTCGTCC
AACCCAAAGAAGCGCAAGAAGGAGATGAAGAAGCGGAACAAACAAAGGGA
TAAGAAGGAGGCGGTCGCCAACAAGCATCATCACAAGAAGCGTAAGCACA
GGGAGCACAAGGAGTCCCGACGCAGCAGCAGTGGCAAGCGCAATATTTTT
GGGCTGCACGTGTATTTGATTGTCCTGACTGTGGTATCCGTGATGATAAC
TAGCATGGGTGTGTATTATTACAAGAAGACCACCCGAAGCCTGATGCCTC
CCGCGGGAGTACTATTCCCTGGTACAAAGGCACCAAGCACATGCTCAGAA
GAAGGACAACAAGAACGAGAATTGCCAACACAACCTCGAGTATACTTGAG
TCACCACTGGCCTTTGGTAATGAGGTTGGCATTTAATTTTCAGGTACTTG
CAATTTTAGGGCGCGGGGCGGGTGCCTTAACATCACTTTTCGGTCAAGAC
ATGCTTTTCGCAACCATTACGCTGCGCATTCTCATGCCCTATTTCTTCGT
GAATCGACACAGAGAATCCTAACGCGTGTGATCGAGTCACCCTTCTTCCC
AGAAGCCCGTGCCACGCGCCTAAGAAGCAGGGTATGTTGAATTCGAAGTT
GTCGACCTTTTGGCTGATGGAGGAGTCCTTCCACTCTCACCGCAATACTC
GACGTCTCCCTCCTACTTACGACGGCAGGCCTTGCAAGAAATGCGGCTGA
ATGATGAACCCCTTCAAGACGATCCCCCGTATCGCCCTTTCCCTGGGTAT
GCTCCTCGACCTCGCTTTCGAGCCGTTGCGGAGAAACACCTGCAGGCGCA
AAGAGAGCAGCATCGGGCTGCCTTGCGTGCAGTCCAGCCTTTGATGTTAA
ATGGTCACGAGCAAGGTAAGCGGAAAAGGATTATCTTAGGGTTGTTTTGT
ATATTTTTAAAAGTCTCGTCGTACTATTGTTCTCGCTTGCGTACATGACG
GGCTTGAGCTGCTCATTCTCTTTCTATCCCATCTGCCCATTTTGGAATCA
TTTCAGACTGCGTTAGCCCCCGCTGTCTCTCAGACGGCTCCTTTCCGTTT
TTTCGGTGGCTTGAGAATCAGCAACGGCGACTGATCAGCGCACAGAGTCT
ATGCAATTTTATTCTGCAATGGGGCAAAGGAGAGCTGGAATTGGAGGCGT
CCAAATTAAGCGGGATGCATGAAGCCAGCGCTCGACAGCTTTGAGCATGG
CTTTGGCATGTATGAAAATATATACCTTTCTGGACTCTTGTTATTAGGGC
GCTATTTTGCTGTCAAGTTTTGCTTTTTGTGATTGTTTTGGGCCCCGCCT
CTCTCCACCTCCGCAGAAGGGGGACAGCTCGAATCGGTTTGGCACGGGAT
CATCGCGAAAACTACACATGACGGCGGTCTCTACAATGAATGAACCCACG
TTAATCACCACTTTCACCATCACCTTAGCAACAACGATAACAATGATGAC
GTCCTGATTCTCCGAGCGGTGGCGGTGCCCTAGGCAGAGGAGGGAGGGTG
GCTGGATCATCATCACAATTATTATCACCATCGTGCGGGGAGGAGTCGTC
GTGGCCTATTCCCCCACCGCCCACACGGCGACAAATCCTTACTTACTTTA
CATACACAC

Coding sequence (CDS) from alignment at scaffold_13:47195..48853-

>mRNA_5277 ID=mRNA_5277|Name=jgi.p|Nanoce1779_2|591985|organism=Nannochloropsis oceanica|type=CDS|length=3516bp|location=Sequence derived from alignment at scaffold_13:47195..48853- (Nannochloropsis oceanica)
ACTGCGTTAGCCCCCGCTGTCTCTCAGACGGCTCCTTTCCGTTTTTTCGG
TGGCTTGAGAATCAGCAACGGCGACTGATCAGCGCACAGAGTCTATGCAA
TTTTATTCTGCAATGGGGCAAAGGAGAGCTGGAATTGGAGGCGTCCAAAT
TAAGCGGGATGCATGAAGCCAGCGCTCGACAGCTTTGAGCCTTGCAAGAA
ATGCGGCTGAATGATGAACCCCTTCAAGACGATCCCCCGTATCGCCCTTT
CCCTGGGTATGCTCCTCGACCTCGCTTTCGAGCCGTTGCGGAGAAACACC
TGCAGGCGCAAAGAGAGCAGCATCGGGCTGCCTTGCGTGCAGTCCAGCCT
TTGATGTTAAATGGTCACGAGCAAGAGAATCCTAACGCGTGTGATCGAGT
CACCCTTCTTCCCAGAAGCCCGTGCCACGCGCCTAAGAAGCAGGATGCCG
CCTTCGTCCAACAATACCGTGGGCTCGTCGTCGTCCAACCCAAAGAAGCG
CAAGAAGGAGATGAAGAAGCGGAACAAACAAAGGGATAAGAAGGAGGCGG
TCGCCAACAAGCATCATCACAAGAAGCGTAAGCACAGGGAGCACAAGGAG
TCCCGACGCAGCAGCAGTGGCAAGCGCAATATTTTTGGGCTGCACGTGTA
TTTGATTGTCCTGACTGTGGTATCCGTGATGATAACTAGCATGGGTGTGT
ATTATTACAAGAAGACCACCCGAAGCCTGATGCCTCCCGCGGGAGTACTA
TTCCCTGGTACAAAGGCACCAAGCACATGCTCAGAAGAAGGACAACAAGA
ACGAGAATTGCCAACACAACCTCGAGTATACTTGAGTCACCACTGGCCTT
TGGTAATGAGGTTGGCATTTAATTTTCAGACTGCGTTAGCCCCCGCTGTC
TCTCAGACGGCTCCTTTCCGTTTTTTCGGTGGCTTGAGAATCAGCAACGG
CGACTGATCAGCGCACAGAGTCTATGCAATTTTATTCTGCAATGGGGCAA
AGGAGAGCTGGAATTGGAGGCGTCCAAATTAAGCGGGATGCATGAAGCCA
GCGCTCGACAGCTTTGAGCCTTGCAAGAAATGCGGCTGAATGATGAACCC
CTTCAAGACGATCCCCCGTATCGCCCTTTCCCTGGGTATGCTCCTCGACC
TCGCTTTCGAGCCGTTGCGGAGAAACACCTGCAGGCGCAAAGAGAGCAGC
ATCGGGCTGCCTTGCGTGCAGTCCAGCCTTTGATGTTAAATGGTCACGAG
CAAGAGAATCCTAACGCGTGTGATCGAGTCACCCTTCTTCCCAGAAGCCC
GTGCCACGCGCCTAAGAAGCAGGATGCCGCCTTCGTCCAACAATACCGTG
GGCTCGTCGTCGTCCAACCCAAAGAAGCGCAAGAAGGAGATGAAGAAGCG
GAACAAACAAAGGGATAAGAAGGAGGCGGTCGCCAACAAGCATCATCACA
AGAAGCGTAAGCACAGGGAGCACAAGGAGTCCCGACGCAGCAGCAGTGGC
AAGCGCAATATTTTTGGGCTGCACGTGTATTTGATTGTCCTGACTGTGGT
ATCCGTGATGATAACTAGCATGGGTGTGTATTATTACAAGAAGACCACCC
GAAGCCTGATGCCTCCCGCGGGAGTACTATTCCCTGGTACAAAGGCACCA
AGCACATGCTCAGAAGAAGGACAACAAGAACGAGAATTGCCAACACAACC
TCGAGTATACTTGAGTCACCACTGGCCTTTGGTAATGAGGTTGGCATTTA
ATTTTCAGACTGCGTTAGCCCCCGCTGTCTCTCAGACGGCTCCTTTCCGT
TTTTTCGGTGGCTTGAGAATCAGCAACGGCGACTGATCAGCGCACAGAGT
CTATGCAATTTTATTCTGCAATGGGGCAAAGGAGAGCTGGAATTGGAGGC
GTCCAAATTAAGCGGGATGCATGAAGCCAGCGCTCGACAGCTTTGAGCCT
TGCAAGAAATGCGGCTGAATGATGAACCCCTTCAAGACGATCCCCCGTAT
CGCCCTTTCCCTGGGTATGCTCCTCGACCTCGCTTTCGAGCCGTTGCGGA
GAAACACCTGCAGGCGCAAAGAGAGCAGCATCGGGCTGCCTTGCGTGCAG
TCCAGCCTTTGATGTTAAATGGTCACGAGCAAGAGAATCCTAACGCGTGT
GATCGAGTCACCCTTCTTCCCAGAAGCCCGTGCCACGCGCCTAAGAAGCA
GGATGCCGCCTTCGTCCAACAATACCGTGGGCTCGTCGTCGTCCAACCCA
AAGAAGCGCAAGAAGGAGATGAAGAAGCGGAACAAACAAAGGGATAAGAA
GGAGGCGGTCGCCAACAAGCATCATCACAAGAAGCGTAAGCACAGGGAGC
ACAAGGAGTCCCGACGCAGCAGCAGTGGCAAGCGCAATATTTTTGGGCTG
CACGTGTATTTGATTGTCCTGACTGTGGTATCCGTGATGATAACTAGCAT
GGGTGTGTATTATTACAAGAAGACCACCCGAAGCCTGATGCCTCCCGCGG
GAGTACTATTCCCTGGTACAAAGGCACCAAGCACATGCTCAGAAGAAGGA
CAACAAGAACGAGAATTGCCAACACAACCTCGAGTATACTTGAGTCACCA
CTGGCCTTTGGTAATGAGGTTGGCATTTAATTTTCAGACTGCGTTAGCCC
CCGCTGTCTCTCAGACGGCTCCTTTCCGTTTTTTCGGTGGCTTGAGAATC
AGCAACGGCGACTGATCAGCGCACAGAGTCTATGCAATTTTATTCTGCAA
TGGGGCAAAGGAGAGCTGGAATTGGAGGCGTCCAAATTAAGCGGGATGCA
TGAAGCCAGCGCTCGACAGCTTTGAGCCTTGCAAGAAATGCGGCTGAATG
ATGAACCCCTTCAAGACGATCCCCCGTATCGCCCTTTCCCTGGGTATGCT
CCTCGACCTCGCTTTCGAGCCGTTGCGGAGAAACACCTGCAGGCGCAAAG
AGAGCAGCATCGGGCTGCCTTGCGTGCAGTCCAGCCTTTGATGTTAAATG
GTCACGAGCAAGAGAATCCTAACGCGTGTGATCGAGTCACCCTTCTTCCC
AGAAGCCCGTGCCACGCGCCTAAGAAGCAGGATGCCGCCTTCGTCCAACA
ATACCGTGGGCTCGTCGTCGTCCAACCCAAAGAAGCGCAAGAAGGAGATG
AAGAAGCGGAACAAACAAAGGGATAAGAAGGAGGCGGTCGCCAACAAGCA
TCATCACAAGAAGCGTAAGCACAGGGAGCACAAGGAGTCCCGACGCAGCA
GCAGTGGCAAGCGCAATATTTTTGGGCTGCACGTGTATTTGATTGTCCTG
ACTGTGGTATCCGTGATGATAACTAGCATGGGTGTGTATTATTACAAGAA
GACCACCCGAAGCCTGATGCCTCCCGCGGGAGTACTATTCCCTGGTACAA
AGGCACCAAGCACATGCTCAGAAGAAGGACAACAAGAACGAGAATTGCCA
ACACAACCTCGAGTATACTTGAGTCACCACTGGCCTTTGGTAATGAGGTT
GGCATTTAATTTTCAG

Synonyms

Publications