jgi.p|Nanoce1779_2|592389, mRNA_5392 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592389
Unique NamemRNA_5392
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1793
Alignment locationscaffold_13:325555..327347 -

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Properties
Property NameValue
TranscriptId592475
TrackFilteredModels2
ProteinId592389
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:325555..327347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592389gene_5392Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592389mRNA_5392-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5392CDS_5392Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5392 ID=mRNA_5392|Name=jgi.p|Nanoce1779_2|592389|organism=Nannochloropsis oceanica|type=mRNA|length=1793bp
TTCAGCCAGAACGGCATCCAGCTCCCGTGACAGCTCTTCTGCCATCTCTT
CCTCCTCCTCCTCTTCTTCCTCCACCTCCTCTTCCCCCCCTTCCTTCTTG
CTATCCTCATTCCCGTTGTTTACGCCCTCCTTTAGTTCCTCACCCGCCCC
CGATGTGGCGGTGGACTTATCGTCGCCCGCGTCAGTACTGTTCTCCTCCT
TCTTATTTGAGGACGGGGCCGAGGGTGCTGCGTCCTCGGTGTCACCCCCT
GCCTCGTCGTCTTCCCGCTTCGGTAAGGCCAAGGCGGTGTGGGCCTCATG
GTTGCCATTGACGCTGGCGCTACCATTGACACTCACGCTGGAGTTCGAGA
TGTCCTGTCGCCCGAGGCATGTAGATTCTATCCTCCCCTCCCCTTTCTTC
GCACCGTCCGCTTCCTGTTGAGCAGGGGCACCGACTTTCGCCTCGGTCTG
GACCTTGGGCGGGGGCTGGGACGAGAGCCCGAGGTTGGCCAACTTGGCAC
GGCGCTGCAGGCGGGCCTTAAGCAGTTTAACTGTCAACTTGTTGCGGCGA
GGGTTGTTACGGCCGCGCATACACTCGGCGATGTCCTTGTCCGTGAGTCC
CACGTGCGAGTAGACGAACATCACAAGGCTCAGGCGCGCCACCTCCTTCC
AGGTCAGCTTGTTCAGGGGCAGCACAAGCCCACTCTTGTCCGAGCACACC
TCTTCCATCATTTCTCCCGTACTGCCAGTTTTCAGTCCCAGCACGTACTC
CACATCAGGCGTTACGGCTCGCACCAGGGCCACGCACAAGTCCTCCAGCA
GCCGCAACGCCTCGGCTCTGGGCTCCTCCGCAGTCCCCAGCGCCCCACCA
GGCGCAGGCTTTGCCAGCACGCAGAGCGCCTCGGCCAGCTCCGGAAGTGT
GGGCACCGCCAGCAGCCCCAGGGGTCGTGCAAACGTGTATATAAAATTGC
AGCACGAGATAAGCTTGGCCCGCTGCAATGGCGGCAAGGAGGACAAGGCC
GATGGCGTAGAGGGAGCAGGCGGCAGGACCAAGGGTAGGTCAACCTCAAT
GGCAGGTGAAACCCTCGACACCCCTAAGTCTGCCACCATGGGCCGCGCCC
GTAGACCGGGTAATTCCTTCTTGAATTTGGCAAGGATCTTGGACTTGGCG
TCGCTTTTGCGCTTCTGGACTTCCAGACGAACCGCTTTGCGAATCTCTTT
CTCCACCTCGGGCGCCACCGAAATCTTCTTCTTCTTACGCCCTACTCCAG
ACTTCTTGGTGACCGCTATCCCCGAAACATCGCCACTTATTACGGAAGCT
TCTTCTGACGAGGAGGTCTTCTTGTTCAAAGGCGGCTTCTTGGATGCAGG
CGCCCCGGCAGCCGTCGTCATGCCTGTCTCCTCGGTAACTTCCCTCTTTT
TCTTGTACGCCTCGACAGCAGTGGGGGTCTCGGTTGCAACGGGACGCTTC
ATCTTTTTGCTGGTGTCCCCCCCGGTAGTCCCATACTCCTTGCCGGCAGA
TCCTTCCATCATCGGAGACGTCCTCTTCACGTCACTGCCCATGCCAATGC
TGGTGCGCGCTGGAGAGCTGACTGGCCTTTCCTCACCCATGGCAACATGT
TCCTTACCGGAATCCATCTCGTCGTCAAAAAGGTCTGATGCCATTACCAG
TGCCTGCGGCTTGGGCGTTCCCCCGATGCTGGTGGTACCGGAAGCCTTGG
CCTTTACCGCAGCCGCTGCCAAGGCCTCCTTCCCCCTCCTCCCTTCTTCT
TCGTCCGAGCTATCGATCATAGGGGTGCCCTGTGATTTTCCTG
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protein sequence of jgi.p|Nanoce1779_2|592389

>mRNA_5392-protein ID=mRNA_5392-protein|Name=jgi.p|Nanoce1779_2|592389|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MVAIDAGATIDTHAGVRDVLSPEACRFYPPLPFLRTVRFLLSRGTDFRLG
LDLGRGLGREPEVGQLGTALQAGLKQFNCQLVAARVVTAAHTLGDVLVRE
SHVRVDEHHKAQARHLLPGQLVQGQHKPTLVRAHLFHHFSRTASFQSQHV
LHIRRYGSHQGHAQVLQQPQRLGSGLLRSPQRPTRRRLCQHAERLGQLRK
CGHRQQPQGSCKRVYKIAARDKLGPLQWRQGGQGRWRRGSRRQDQG*
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mRNA from alignment at scaffold_13:325555..327347-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5392 ID=mRNA_5392|Name=jgi.p|Nanoce1779_2|592389|organism=Nannochloropsis oceanica|type=mRNA|length=1793bp|location=Sequence derived from alignment at scaffold_13:325555..327347- (Nannochloropsis oceanica)
TTCAGCCAGAACGGCATCCAGCTCCCGTGACAGCTCTTCTGCCATCTCTT
CCTCCTCCTCCTCTTCTTCCTCCACCTCCTCTTCCCCCCCTTCCTTCTTG
CTATCCTCATTCCCGTTGTTTACGCCCTCCTTTAGTTCCTCACCCGCCCC
CGATGTGGCGGTGGACTTATCGTCGCCCGCGTCAGTACTGTTCTCCTCCT
TCTTATTTGAGGACGGGGCCGAGGGTGCTGCGTCCTCGGTGTCACCCCCT
GCCTCGTCGTCTTCCCGCTTCGGTAAGGCCAAGGCGGTGTGGGCCTCATG
GTTGCCATTGACGCTGGCGCTACCATTGACACTCACGCTGGAGTTCGAGA
TGTCCTGTCGCCCGAGGCATGTAGATTCTATCCTCCCCTCCCCTTTCTTC
GCACCGTCCGCTTCCTGTTGAGCAGGGGCACCGACTTTCGCCTCGGTCTG
GACCTTGGGCGGGGGCTGGGACGAGAGCCCGAGGTTGGCCAACTTGGCAC
GGCGCTGCAGGCGGGCCTTAAGCAGTTTAACTGTCAACTTGTTGCGGCGA
GGGTTGTTACGGCCGCGCATACACTCGGCGATGTCCTTGTCCGTGAGTCC
CACGTGCGAGTAGACGAACATCACAAGGCTCAGGCGCGCCACCTCCTTCC
AGGTCAGCTTGTTCAGGGGCAGCACAAGCCCACTCTTGTCCGAGCACACC
TCTTCCATCATTTCTCCCGTACTGCCAGTTTTCAGTCCCAGCACGTACTC
CACATCAGGCGTTACGGCTCGCACCAGGGCCACGCACAAGTCCTCCAGCA
GCCGCAACGCCTCGGCTCTGGGCTCCTCCGCAGTCCCCAGCGCCCCACCA
GGCGCAGGCTTTGCCAGCACGCAGAGCGCCTCGGCCAGCTCCGGAAGTGT
GGGCACCGCCAGCAGCCCCAGGGGTCGTGCAAACGTGTATATAAAATTGC
AGCACGAGATAAGCTTGGCCCGCTGCAATGGCGGCAAGGAGGACAAGGCC
GATGGCGTAGAGGGAGCAGGCGGCAGGACCAAGGGTAGGTCAACCTCAAT
GGCAGGTGAAACCCTCGACACCCCTAAGTCTGCCACCATGGGCCGCGCCC
GTAGACCGGGTAATTCCTTCTTGAATTTGGCAAGGATCTTGGACTTGGCG
TCGCTTTTGCGCTTCTGGACTTCCAGACGAACCGCTTTGCGAATCTCTTT
CTCCACCTCGGGCGCCACCGAAATCTTCTTCTTCTTACGCCCTACTCCAG
ACTTCTTGGTGACCGCTATCCCCGAAACATCGCCACTTATTACGGAAGCT
TCTTCTGACGAGGAGGTCTTCTTGTTCAAAGGCGGCTTCTTGGATGCAGG
CGCCCCGGCAGCCGTCGTCATGCCTGTCTCCTCGGTAACTTCCCTCTTTT
TCTTGTACGCCTCGACAGCAGTGGGGGTCTCGGTTGCAACGGGACGCTTC
ATCTTTTTGCTGGTGTCCCCCCCGGTAGTCCCATACTCCTTGCCGGCAGA
TCCTTCCATCATCGGAGACGTCCTCTTCACGTCACTGCCCATGCCAATGC
TGGTGCGCGCTGGAGAGCTGACTGGCCTTTCCTCACCCATGGCAACATGT
TCCTTACCGGAATCCATCTCGTCGTCAAAAAGGTCTGATGCCATTACCAG
TGCCTGCGGCTTGGGCGTTCCCCCGATGCTGGTGGTACCGGAAGCCTTGG
CCTTTACCGCAGCCGCTGCCAAGGCCTCCTTCCCCCTCCTCCCTTCTTCT
TCGTCCGAGCTATCGATCATAGGGGTGCCCTGTGATTTTCCTG
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Coding sequence (CDS) from alignment at scaffold_13:325555..327347-

>mRNA_5392 ID=mRNA_5392|Name=jgi.p|Nanoce1779_2|592389|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_13:325555..327347- (Nannochloropsis oceanica)
ATGGTTGCCATTGACGCTGGCGCTACCATTGACACTCACGCTGGAGTTCG
AGATGTCCTGTCGCCCGAGGCATGTAGATTCTATCCTCCCCTCCCCTTTC
TTCGCACCGTCCGCTTCCTGTTGAGCAGGGGCACCGACTTTCGCCTCGGT
CTGGACCTTGGGCGGGGGCTGGGACGAGAGCCCGAGGTTGGCCAACTTGG
CACGGCGCTGCAGGCGGGCCTTAAGCAGTTTAACTGTCAACTTGTTGCGG
CGAGGGTTGTTACGGCCGCGCATACACTCGGCGATGTCCTTGTCCGTGAG
TCCCACGTGCGAGTAGACGAACATCACAAGGCTCAGGCGCGCCACCTCCT
TCCAGGTCAGCTTGTTCAGGGGCAGCACAAGCCCACTCTTGTCCGAGCAC
ACCTCTTCCATCATTTCTCCCGTACTGCCAGTTTTCAGTCCCAGCACGTA
CTCCACATCAGGCGTTACGGCTCGCACCAGGGCCACGCACAAGTCCTCCA
GCAGCCGCAACGCCTCGGCTCTGGGCTCCTCCGCAGTCCCCAGCGCCCCA
CCAGGCGCAGGCTTTGCCAGCACGCAGAGCGCCTCGGCCAGCTCCGGAAG
TGTGGGCACCGCCAGCAGCCCCAGGGGTCGTGCAAACGTGTATATAAAAT
TGCAGCACGAGATAAGCTTGGCCCGCTGCAATGGCGGCAAGGAGGACAAG
GCCGATGGCGTAGAGGGAGCAGGCGGCAGGACCAAGGGTAG
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Synonyms
Publications