jgi.p|Nanoce1779_2|592816, mRNA_5520 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592816
Unique Name	mRNA_5520
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1231
Alignment location	scaffold_13:620046..621276 -

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Properties


Property Name	Value
TranscriptId	592902
Track	FilteredModels2
ProteinId	592816

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:620046..621276 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592816	gene_5520	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592816	mRNA_5520-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5520	CDS_5520	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:620046..621276-
coding sequence from alignment at scaffold_13:620046..621276-

mRNA sequence

>mRNA_5520 ID=mRNA_5520|Name=jgi.p|Nanoce1779_2|592816|organism=Nannochloropsis oceanica|type=mRNA|length=1231bp
CCCAAACCCGGTGGCGCCATGTAGCTTCTAGGACGGCCCAGCCTCACCCC
TCTTCCATCTCCTTCCTCCCCCTCCTCCTTCCCCTCCACATCATGTCTTT
GTCTTATCCTCTCCCGTCTAGAAGACCCCGCGGGTCTTGGCGGGCTGGTC
CACCGAAAGGTTCTAGAAAGCTGCGATGCTTTGATGGCTCGAATCCGTCT
TTCCTCCTGTTTCTCCTCCCCCTCCTCTTCCAGGGAACTACCACTGTCGC
TGCTACTGCTGCCGTCGCTGCTGCCACCACTATTATTGTTTCTACTCTCT
TCTTCACTATCTCTTCCTGATCCTCCTTCTGCTTCTCGTTTTCCTCCTTT
CTTCCTCCTCCCTTTCTTCCTCCCTTTCCTCGTTCTTTGCTCCGCTGGCG
GCGGGGCATCCGACATGACCATCGTCCCCAGGTCCACACCAAATCTTTTC
TTCATCGAGTTTAACCACAACAACTTGAGTCTCTGTGTCGATGCTTCTGT
TTCTGCCTCCGATAATCCATCCGAATGGTCGAGTTGCAGCAAGGCAGCAA
AGGCAGGCAAAACGCGTTCCACCACCCCTCGGTAGGCTTGAACAACACCG
CGAGACAGAGTTTTAAGCGGGACAATATCTTCATCATTGATGGAAGGGGT
TGGTGGCGCTGCCGCTGCGGTGTAGGGGCAGTTGCTGTTGCTTGCCATGG
CGTGCTTGGGGCTTAGCTAGCGAGGAACAAAGGAGCCGTGCAGTATGGCG
GGACTGTATGATGGTGGGGTGACGAAAGCACGACCATCAGCGGGAGAAGG
CTACTTCGGGCACGTCCAGATTGTTGGTATCGTCGTCTTTTTCGTCGTCT
TGCTGATCCTCCTGTTAGTGGTTGGTGTGTCTGGCGGTTAATAGTTTGTT
ATGGAGTGAAGAGGAGGAGGCGAGGCGCGGCAGATGATGGTTTTGGGTTC
TGCACCTCGACCTTGGTCCTCAGCCAGCCTATCTTGCTCTTGGCTTGTCC
AAAGATTACCTATGAACGGGGACAATCAGCCACGCGACCTCATAACCCTC
CTCTGCTTGTCCTCGATGTGCTTCGCATTGATGTTCGCAGCCCAAGCAAG
CCCCGGTTCTCATCCTCCTCCCCTGCCTCATCCAATCATCATCACGATGC
AAACTACACAGGCGACGCGGGCTTCTTGTTGTGTCTGTGCGACTAGCCCA
GCACCAACACACACGAGGCCGATCCTTCGAC

protein sequence of jgi.p|Nanoce1779_2|592816

>mRNA_5520-protein ID=mRNA_5520-protein|Name=jgi.p|Nanoce1779_2|592816|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MARIRLSSCFSSPSSSRELPLSLLLLPSLLPPLLLFLLSSSLSLPDPPSA
SRFPPFFLLPFFLPFLVLCSAGGGASDMTIVPRSTPNLFFIEFNHNNLSL
CVDASVSASDNPSEWSSCSKAAKAGKTRSTTPR*

mRNA from alignment at scaffold_13:620046..621276-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5520 ID=mRNA_5520|Name=jgi.p|Nanoce1779_2|592816|organism=Nannochloropsis oceanica|type=mRNA|length=1231bp|location=Sequence derived from alignment at scaffold_13:620046..621276- (Nannochloropsis oceanica)
CCCAAACCCGGTGGCGCCATGTAGCTTCTAGGACGGCCCAGCCTCACCCC
TCTTCCATCTCCTTCCTCCCCCTCCTCCTTCCCCTCCACATCATGTCTTT
GTCTTATCCTCTCCCGTCTAGAAGACCCCGCGGGTCTTGGCGGGCTGGTC
CACCGAAAGGTTCTAGAAAGCTGCGATGCTTTGATGGCTCGAATCCGTCT
TTCCTCCTGTTTCTCCTCCCCCTCCTCTTCCAGGGAACTACCACTGTCGC
TGCTACTGCTGCCGTCGCTGCTGCCACCACTATTATTGTTTCTACTCTCT
TCTTCACTATCTCTTCCTGATCCTCCTTCTGCTTCTCGTTTTCCTCCTTT
CTTCCTCCTCCCTTTCTTCCTCCCTTTCCTCGTTCTTTGCTCCGCTGGCG
GCGGGGCATCCGACATGACCATCGTCCCCAGGTCCACACCAAATCTTTTC
TTCATCGAGTTTAACCACAACAACTTGAGTCTCTGTGTCGATGCTTCTGT
TTCTGCCTCCGATAATCCATCCGAATGGTCGAGTTGCAGCAAGGCAGCAA
AGGCAGGCAAAACGCGTTCCACCACCCCTCGGTAGGCTTGAACAACACCG
CGAGACAGAGTTTTAAGCGGGACAATATCTTCATCATTGATGGAAGGGGT
TGGTGGCGCTGCCGCTGCGGTGTAGGGGCAGTTGCTGTTGCTTGCCATGG
CGTGCTTGGGGCTTAGCTAGCGAGGAACAAAGGAGCCGTGCAGTATGGCG
GGACTGTATGATGGTGGGGTGACGAAAGCACGACCATCAGCGGGAGAAGG
CTACTTCGGGCACGTCCAGATTGTTGGTATCGTCGTCTTTTTCGTCGTCT
TGCTGATCCTCCTGTTAGTGGTTGGTGTGTCTGGCGGTTAATAGTTTGTT
ATGGAGTGAAGAGGAGGAGGCGAGGCGCGGCAGATGATGGTTTTGGGTTC
TGCACCTCGACCTTGGTCCTCAGCCAGCCTATCTTGCTCTTGGCTTGTCC
AAAGATTACCTATGAACGGGGACAATCAGCCACGCGACCTCATAACCCTC
CTCTGCTTGTCCTCGATGTGCTTCGCATTGATGTTCGCAGCCCAAGCAAG
CCCCGGTTCTCATCCTCCTCCCCTGCCTCATCCAATCATCATCACGATGC
AAACTACACAGGCGACGCGGGCTTCTTGTTGTGTCTGTGCGACTAGCCCA
GCACCAACACACACGAGGCCGATCCTTCGAC

Coding sequence (CDS) from alignment at scaffold_13:620046..621276-

>mRNA_5520 ID=mRNA_5520|Name=jgi.p|Nanoce1779_2|592816|organism=Nannochloropsis oceanica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_13:620046..621276- (Nannochloropsis oceanica)
ATGGCTCGAATCCGTCTTTCCTCCTGTTTCTCCTCCCCCTCCTCTTCCAG
GGAACTACCACTGTCGCTGCTACTGCTGCCGTCGCTGCTGCCACCACTAT
TATTGTTTCTACTCTCTTCTTCACTATCTCTTCCTGATCCTCCTTCTGCT
TCTCGTTTTCCTCCTTTCTTCCTCCTCCCTTTCTTCCTCCCTTTCCTCGT
TCTTTGCTCCGCTGGCGGCGGGGCATCCGACATGACCATCGTCCCCAGGT
CCACACCAAATCTTTTCTTCATCGAGTTTAACCACAACAACTTGAGTCTC
TGTGTCGATGCTTCTGTTTCTGCCTCCGATAATCCATCCGAATGGTCGAG
TTGCAGCAAGGCAGCAAAGGCAGGCAAAACGCGTTCCACCACCCCTCGGT
AG

Synonyms

Publications