jgi.p|Nanoce1779_2|592996, mRNA_5567 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592996
Unique NamemRNA_5567
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1018
Alignment locationscaffold_13:775837..776854 +

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Properties
Property NameValue
TranscriptId593082
TrackFilteredModels2
ProteinId592996
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:775837..776854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592996gene_5567Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592996mRNA_5567-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5567CDS_5567Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5567 ID=mRNA_5567|Name=jgi.p|Nanoce1779_2|592996|organism=Nannochloropsis oceanica|type=mRNA|length=1018bp
GCAGGGGTTCATGTTTGATGATCCTCTTGGCGGAAATGCAGAGCCGATGC
AGATGCGAGGTGGGAGGGAGGGAGGGAGGGAAGGCGGAAAAGTTGTCGCG
GGGAAGAAGGGTGGATTAATGGGTGGGATGGATGAGGACGAGGACGAGTG
GCAGGAAGGAGAGGAGGACCTCTTCGGTGGGTTGGAGGACTTGGGCGATT
TGGAGGACTTGGAGAAGCTTGACAAGTTGTTTGCGGAGGAGGCGAGAAAA
GGGAAGAGGGGATTGGGGATAGGGGGAAAGAAGGGAGGGAGGATGGGGGA
GGACGAGGACGAGGAGGTGGAGGATTGGGGGGCGCTGTTGAATGATTTGG
ACCTGGGAGGGCTGGGCGACTTGGAGGGGCTGGAGGAGCTCGTGGGGGCA
GGGAAGAAGGGGGAGAAGAAAGCCCAGGCTGTGACGGCAGCGACGAAAAC
CAAGGCCAGCGCCAGTAGCACGATTGTGAAGGGAACAGGAGCAGCAACTA
CAGCAACGAAGAGTAGCAGTAGCAGCAGCAGCAAGCTCTCGCCTTCGGCA
ATCGCGGGCATGAAGGTGGCTGATTTGAAGGTTGAGCTCAAGGCGATGGG
CTTGGCGGTGAGTGGAACCAAGGGGGAACTCCAGGCCCGCCTACGGGAGG
CGACAGAGTAAGAAGCGAATGGGAGAAAAGGAGAAAAGGAGGAAGGTGGT
AGAATGCGAGACAAAAGAGAACTATATAGAAAAATAATAATAAGTTCCTC
AAGAAGCAAGTTCCCTGGTAGGTGTTTATTTCGCAGACATTGGGAAATAA
GGATAAAACGAAGGTGACTGAAGGAATGTGGCCGTAATTGGTCGTTGCTT
GGCACTCTTCAATTATTCTTGTGACCCGCATTCATAACCATGTTCTCTTG
TGTAGTATGCTTTCCTGTTCTCCTCCCTCGTGTCCATTCCTCCTCCCTCA
TGTCCATTCCTCCTCCCTTTCCCTTTCTTTCTTTCACAAGTGTCTATCTG
TTTTTGTAGATCCAGTCT
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protein sequence of jgi.p|Nanoce1779_2|592996

>mRNA_5567-protein ID=mRNA_5567-protein|Name=jgi.p|Nanoce1779_2|592996|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MFDDPLGGNAEPMQMRGGREGGREGGKVVAGKKGGLMGGMDEDEDEWQEG
EEDLFGGLEDLGDLEDLEKLDKLFAEEARKGKRGLGIGGKKGGRMGEDED
EEVEDWGALLNDLDLGGLGDLEGLEELVGAGKKGEKKAQAVTAATKTKAS
ASSTIVKGTGAATTATKSSSSSSSKLSPSAIAGMKVADLKVELKAMGLAV
SGTKGELQARLREATE*
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mRNA from alignment at scaffold_13:775837..776854+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5567 ID=mRNA_5567|Name=jgi.p|Nanoce1779_2|592996|organism=Nannochloropsis oceanica|type=mRNA|length=1018bp|location=Sequence derived from alignment at scaffold_13:775837..776854+ (Nannochloropsis oceanica)
GCAGGGGTTCATGTTTGATGATCCTCTTGGCGGAAATGCAGAGCCGATGC
AGATGCGAGGTGGGAGGGAGGGAGGGAGGGAAGGCGGAAAAGTTGTCGCG
GGGAAGAAGGGTGGATTAATGGGTGGGATGGATGAGGACGAGGACGAGTG
GCAGGAAGGAGAGGAGGACCTCTTCGGTGGGTTGGAGGACTTGGGCGATT
TGGAGGACTTGGAGAAGCTTGACAAGTTGTTTGCGGAGGAGGCGAGAAAA
GGGAAGAGGGGATTGGGGATAGGGGGAAAGAAGGGAGGGAGGATGGGGGA
GGACGAGGACGAGGAGGTGGAGGATTGGGGGGCGCTGTTGAATGATTTGG
ACCTGGGAGGGCTGGGCGACTTGGAGGGGCTGGAGGAGCTCGTGGGGGCA
GGGAAGAAGGGGGAGAAGAAAGCCCAGGCTGTGACGGCAGCGACGAAAAC
CAAGGCCAGCGCCAGTAGCACGATTGTGAAGGGAACAGGAGCAGCAACTA
CAGCAACGAAGAGTAGCAGTAGCAGCAGCAGCAAGCTCTCGCCTTCGGCA
ATCGCGGGCATGAAGGTGGCTGATTTGAAGGTTGAGCTCAAGGCGATGGG
CTTGGCGGTGAGTGGAACCAAGGGGGAACTCCAGGCCCGCCTACGGGAGG
CGACAGAGTAAGAAGCGAATGGGAGAAAAGGAGAAAAGGAGGAAGGTGGT
AGAATGCGAGACAAAAGAGAACTATATAGAAAAATAATAATAAGTTCCTC
AAGAAGCAAGTTCCCTGGTAGGTGTTTATTTCGCAGACATTGGGAAATAA
GGATAAAACGAAGGTGACTGAAGGAATGTGGCCGTAATTGGTCGTTGCTT
GGCACTCTTCAATTATTCTTGTGACCCGCATTCATAACCATGTTCTCTTG
TGTAGTATGCTTTCCTGTTCTCCTCCCTCGTGTCCATTCCTCCTCCCTCA
TGTCCATTCCTCCTCCCTTTCCCTTTCTTTCTTTCACAAGTGTCTATCTG
TTTTTGTAGATCCAGTCT
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Coding sequence (CDS) from alignment at scaffold_13:775837..776854+

>mRNA_5567 ID=mRNA_5567|Name=jgi.p|Nanoce1779_2|592996|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_13:775837..776854+ (Nannochloropsis oceanica)
ATGTTTGATGATCCTCTTGGCGGAAATGCAGAGCCGATGCAGATGCGAGG
TGGGAGGGAGGGAGGGAGGGAAGGCGGAAAAGTTGTCGCGGGGAAGAAGG
GTGGATTAATGGGTGGGATGGATGAGGACGAGGACGAGTGGCAGGAAGGA
GAGGAGGACCTCTTCGGTGGGTTGGAGGACTTGGGCGATTTGGAGGACTT
GGAGAAGCTTGACAAGTTGTTTGCGGAGGAGGCGAGAAAAGGGAAGAGGG
GATTGGGGATAGGGGGAAAGAAGGGAGGGAGGATGGGGGAGGACGAGGAC
GAGGAGGTGGAGGATTGGGGGGCGCTGTTGAATGATTTGGACCTGGGAGG
GCTGGGCGACTTGGAGGGGCTGGAGGAGCTCGTGGGGGCAGGGAAGAAGG
GGGAGAAGAAAGCCCAGGCTGTGACGGCAGCGACGAAAACCAAGGCCAGC
GCCAGTAGCACGATTGTGAAGGGAACAGGAGCAGCAACTACAGCAACGAA
GAGTAGCAGTAGCAGCAGCAGCAAGCTCTCGCCTTCGGCAATCGCGGGCA
TGAAGGTGGCTGATTTGAAGGTTGAGCTCAAGGCGATGGGCTTGGCGGTG
AGTGGAACCAAGGGGGAACTCCAGGCCCGCCTACGGGAGGCGACAGAGTA
A
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Synonyms
Publications