jgi.p|Nanoce1779_2|625715, mRNA_5437 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|625715
Unique NamemRNA_5437
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length570
Alignment locationscaffold_13:423568..424408 +

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Properties
Property NameValue
TranscriptId625801
TrackFilteredModels2
ProteinId625715
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:423568..424408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625715gene_5437Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625715mRNA_5437-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5437CDS_5437Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5437 ID=mRNA_5437|Name=jgi.p|Nanoce1779_2|625715|organism=Nannochloropsis oceanica|type=mRNA|length=570bp
CCCCCCCCCCCCCCTTCCCCCCCCACTCTCCGATCGCGAGGAACAAAGTT
CGGCACCTTCCTGGTCGCTCCTCTTGCATCACTGCACACAAGTACAACAC
TCCACATCAGGCAGCCATGACGGGAGTAGCAAAGGCATGGCCACGAGCCA
AGATCCTAGACACGGCCAAGGACATGTCTCCTGTCGCAAATGGCTCTTAT
TACCATGTATTGTGGCGTGATGGGAAGCAAATAAATCTGGCCGAAGTTAT
CGAAAGCCGACCCGCGCGCATCCCCCTTGAGGACAGCGCCACCACTAAGA
AACCCGCTGGCAAAAAACGTGGCCGACCTTGCAAGACAGAGGTTTCCTCA
GAGGTTGAGGCGGATGATGAGGACAGGGCGGGGCACAAAAGGGAAGCAGC
TGCAGCGGCAGCGGCGCCACAAGCAGCGACTGAGGACGAGAGTCAGAAGA
ACGCCTCGGATTTTGATTATTACGTGCATTACTGCGGTTATGACCGGCGC
TTGGACGAGTGGGTGGCTGTGGATCGCATTGACGTCGTCAGTGGCTTGCA
GCCCCCGCCGGCAGTGAATG
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protein sequence of jgi.p|Nanoce1779_2|625715

>mRNA_5437-protein ID=mRNA_5437-protein|Name=jgi.p|Nanoce1779_2|625715|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MTGVAKAWPRAKILDTAKDMSPVANGSYYHVLWRDGKQINLAEVIESRPA
RIPLEDSATTKKPAGKKRGRPCKTEVSSEVEADDEDRAGHKREAAAAAAA
PQAATEDESQKNASDFDYYVHYCGYDRRLDEWVAVDRIDVVSGLQPPPAV
N
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mRNA from alignment at scaffold_13:423568..424408+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5437 ID=mRNA_5437|Name=jgi.p|Nanoce1779_2|625715|organism=Nannochloropsis oceanica|type=mRNA|length=841bp|location=Sequence derived from alignment at scaffold_13:423568..424408+ (Nannochloropsis oceanica)
CCCCCCCCCCCCCCTTCCCCCCCCACTCTCCGATCGCGAGGAACAAAGTT
CGGCACCTTCCTGGTCGCTCCTCTTGCATCACTGCACACAAGTACAACAC
TCCACATCAGGCAGCCATGACGGGAGTAGCAAAGGCATGGCCACGAGGTA
CGTGAAAGAACTGGGCAATAGACTTTGAACGTTGAGCGAGGCCGAGGCCA
AGGCGGCACAATAATGATGGTGATTGGTAGGCGGCGTGGATGATACCCAA
CATCCTTATTCCATATCGTTTTGTCAACTCGGCCAAGAGTAACGGCACGA
GATGGATCCTCATGAAGGCGGGGGCCTCCTTGATTAGTAGTTTTGCGGGC
TGCACGGTTGTATATCTCCCCCCTCCTCTCACCCATCTCGTCACCCCTCC
TCCTCCTCGTCTTCACAGCCAAGATCCTAGACACGGCCAAGGACATGTCT
CCTGTCGCAAATGGCTCTTATTACCATGTATTGTGGCGTGATGGGAAGCA
AATAAATCTGGCCGAAGTTATCGAAAGCCGACCCGCGCGCATCCCCCTTG
AGGACAGCGCCACCACTAAGAAACCCGCTGGCAAAAAACGTGGCCGACCT
TGCAAGACAGAGGTTTCCTCAGAGGTTGAGGCGGATGATGAGGACAGGGC
GGGGCACAAAAGGGAAGCAGCTGCAGCGGCAGCGGCGCCACAAGCAGCGA
CTGAGGACGAGAGTCAGAAGAACGCCTCGGATTTTGATTATTACGTGCAT
TACTGCGGTTATGACCGGCGCTTGGACGAGTGGGTGGCTGTGGATCGCAT
TGACGTCGTCAGTGGCTTGCAGCCCCCGCCGGCAGTGAATG
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Coding sequence (CDS) from alignment at scaffold_13:423568..424408+

>mRNA_5437 ID=mRNA_5437|Name=jgi.p|Nanoce1779_2|625715|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_13:423568..424408+ (Nannochloropsis oceanica)
ATGACGGGAGTAGCAAAGGCATGGCCACGAGCCAAGATCCTAGACACGGC
CAAGGACATGTCTCCTGTCGCAAATGGCTCTTATTACCATGTATTGTGGC
GTGATGGGAAGCAAATAAATCTGGCCGAAGTTATCGAAAGCCGACCCGCG
CGCATCCCCCTTGAGGACAGCGCCACCACTAAGAAACCCGCTGGCAAAAA
ACGTGGCCGACCTTGCAAGACAGAGGTTTCCTCAGAGGTTGAGGCGGATG
ATGAGGACAGGGCGGGGCACAAAAGGGAAGCAGCTGCAGCGGCAGCGGCG
CCACAAGCAGCGACTGAGGACGAGAGTCAGAAGAACGCCTCGGATTTTGA
TTATTACGTGCATTACTGCGGTTATGACCGGCGCTTGGACGAGTGGGTGG
CTGTGGATCGCATTGACGTCGTCAGTGGCTTGCAGCCCCCGCCGGCAGTG
AATATGACGGGAGTAGCAAAGGCATGGCCACGAGCCAAGATCCTAGACAC
GGCCAAGGACATGTCTCCTGTCGCAAATGGCTCTTATTACCATGTATTGT
GGCGTGATGGGAAGCAAATAAATCTGGCCGAAGTTATCGAAAGCCGACCC
GCGCGCATCCCCCTTGAGGACAGCGCCACCACTAAGAAACCCGCTGGCAA
AAAACGTGGCCGACCTTGCAAGACAGAGGTTTCCTCAGAGGTTGAGGCGG
ATGATGAGGACAGGGCGGGGCACAAAAGGGAAGCAGCTGCAGCGGCAGCG
GCGCCACAAGCAGCGACTGAGGACGAGAGTCAGAAGAACGCCTCGGATTT
TGATTATTACGTGCATTACTGCGGTTATGACCGGCGCTTGGACGAGTGGG
TGGCTGTGGATCGCATTGACGTCGTCAGTGGCTTGCAGCCCCCGCCGGCA
GTGAAT
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Synonyms
Publications