jgi.p|Nanoce1779_2|566920, mRNA_6127 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566920
Unique NamemRNA_6127
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length630
Alignment locationscaffold_14:577066..577695 +

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Properties
Property NameValue
TranscriptId567006
TrackFilteredModels2
ProteinId566920
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:577066..577695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566920gene_6127Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566920mRNA_6127-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6127CDS_6127Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6127 ID=mRNA_6127|Name=jgi.p|Nanoce1779_2|566920|organism=Nannochloropsis oceanica|type=mRNA|length=630bp
ATGGACATTGATGAAAAGAGTAAAGACCAAGGCCCATCAACACAAGACCA
AGACCTTGAAAACATAATACTCAAAGAGGTCGAGATCGGCGACGAAAAGA
ACGAAGAGAAGAAGAAGACTGGGGTTGTAGAGACGAAGCAGAAGGATGAT
GGGGAGGGAGAAGGCGAGAGTCGTCGACGGCGGGTGCGGGATCCGGGGAG
CGTGGAGAAGGAAAGCCCAAACGAGAGGAGGCTGCGTGGGACTGCAAGCA
CCAGCAGTAAATGTATGGATAAGGAGGATCAACTGTACCAGCAGCAGCAG
CGTCCATCTGGAGACGGAGATCCTAACAGCCCACATCTCGTAGCAGCTGC
GGTCGTGGAAAAGAAGGCACTTGGAAGGAGCACTCTGCAGCAGGAAATGG
AGTGGGGACGTTGGCGTGGACGCGCTTCGAGAGACTGCCCAAAATGGCCT
TGCCGGATAGAAAAGGTGGCGGAAGAGCCGGTGGTGGGAGGAGATAAGGA
GGGGAAGGAGATGGGGCAGATGGCGGTGGTGCATTTCTTTGGGTTGCGGG
CTCGGAGAAAGTTCCTGTGGCTTCGTTGGCATTGTTCGAAGCGAACTTCA
AGCGCTTATACAATATATATGTCGGCATGA
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protein sequence of jgi.p|Nanoce1779_2|566920

>mRNA_6127-protein ID=mRNA_6127-protein|Name=jgi.p|Nanoce1779_2|566920|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MDIDEKSKDQGPSTQDQDLENIILKEVEIGDEKNEEKKKTGVVETKQKDD
GEGEGESRRRRVRDPGSVEKESPNERRLRGTASTSSKCMDKEDQLYQQQQ
RPSGDGDPNSPHLVAAAVVEKKALGRSTLQQEMEWGRWRGRASRDCPKWP
CRIEKVAEEPVVGGDKEGKEMGQMAVVHFFGLRARRKFLWLRWHCSKRTS
SAYTIYMSA*
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mRNA from alignment at scaffold_14:577066..577695+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6127 ID=mRNA_6127|Name=jgi.p|Nanoce1779_2|566920|organism=Nannochloropsis oceanica|type=mRNA|length=630bp|location=Sequence derived from alignment at scaffold_14:577066..577695+ (Nannochloropsis oceanica)
ATGGACATTGATGAAAAGAGTAAAGACCAAGGCCCATCAACACAAGACCA
AGACCTTGAAAACATAATACTCAAAGAGGTCGAGATCGGCGACGAAAAGA
ACGAAGAGAAGAAGAAGACTGGGGTTGTAGAGACGAAGCAGAAGGATGAT
GGGGAGGGAGAAGGCGAGAGTCGTCGACGGCGGGTGCGGGATCCGGGGAG
CGTGGAGAAGGAAAGCCCAAACGAGAGGAGGCTGCGTGGGACTGCAAGCA
CCAGCAGTAAATGTATGGATAAGGAGGATCAACTGTACCAGCAGCAGCAG
CGTCCATCTGGAGACGGAGATCCTAACAGCCCACATCTCGTAGCAGCTGC
GGTCGTGGAAAAGAAGGCACTTGGAAGGAGCACTCTGCAGCAGGAAATGG
AGTGGGGACGTTGGCGTGGACGCGCTTCGAGAGACTGCCCAAAATGGCCT
TGCCGGATAGAAAAGGTGGCGGAAGAGCCGGTGGTGGGAGGAGATAAGGA
GGGGAAGGAGATGGGGCAGATGGCGGTGGTGCATTTCTTTGGGTTGCGGG
CTCGGAGAAAGTTCCTGTGGCTTCGTTGGCATTGTTCGAAGCGAACTTCA
AGCGCTTATACAATATATATGTCGGCATGA
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Coding sequence (CDS) from alignment at scaffold_14:577066..577695+

>mRNA_6127 ID=mRNA_6127|Name=jgi.p|Nanoce1779_2|566920|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_14:577066..577695+ (Nannochloropsis oceanica)
ATGGACATTGATGAAAAGAGTAAAGACCAAGGCCCATCAACACAAGACCA
AGACCTTGAAAACATAATACTCAAAGAGGTCGAGATCGGCGACGAAAAGA
ACGAAGAGAAGAAGAAGACTGGGGTTGTAGAGACGAAGCAGAAGGATGAT
GGGGAGGGAGAAGGCGAGAGTCGTCGACGGCGGGTGCGGGATCCGGGGAG
CGTGGAGAAGGAAAGCCCAAACGAGAGGAGGCTGCGTGGGACTGCAAGCA
CCAGCAGTAAATGTATGGATAAGGAGGATCAACTGTACCAGCAGCAGCAG
CGTCCATCTGGAGACGGAGATCCTAACAGCCCACATCTCGTAGCAGCTGC
GGTCGTGGAAAAGAAGGCACTTGGAAGGAGCACTCTGCAGCAGGAAATGG
AGTGGGGACGTTGGCGTGGACGCGCTTCGAGAGACTGCCCAAAATGGCCT
TGCCGGATAGAAAAGGTGGCGGAAGAGCCGGTGGTGGGAGGAGATAAGGA
GGGGAAGGAGATGGGGCAGATGGCGGTGGTGCATTTCTTTGGGTTGCGGG
CTCGGAGAAAGTTCCTGTGGCTTCGTTGGCATTGTTCGAAGCGAACTTCA
AGCGCTTATACAATATATATGTCGGCATGA
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Synonyms
Publications