jgi.p|Nanoce1779_2|593241, mRNA_5951 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593241
Unique Name	mRNA_5951
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1056
Alignment location	scaffold_14:150966..152363 +

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Properties


Property Name	Value
TranscriptId	593327
Track	FilteredModels2
ProteinId	593241

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:150966..152363 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593241	gene_5951	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593241	mRNA_5951-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5951	CDS_5951	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:150966..152363+
coding sequence from alignment at scaffold_14:150966..152363+

mRNA sequence

>mRNA_5951 ID=mRNA_5951|Name=jgi.p|Nanoce1779_2|593241|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
ACAGACCCACAGAAGCACAGACACGTCCAGGCATGAGCCACATGAGCAGT
GGCTGCGGTGATGGAAACATTCCGACAGAGCCTGTCATCACGCCTACCCC
AAATACCCCGACAACCAACGTCTGCGTCGGTGTGGGCGTCCTCGTCCACC
ACAAAGAGCATCCGGGTCTCGTCTTGATCGGGCGACGGAAAGGTTCGCAT
GGTAGTGGAAGCCTTGCACTTCCTGGGGGCCATTTGGAGGTGAATGAGAG
TGTGGCCCAGTGTGCTGTGCGGGAGGTGGAGGAAGAGTGCAACCTCGCCT
TGGATTCGACAAGTGTGCGTTTGGTTGGCGTGACGCAAGATGTGTTTTCT
GAATCGGCGGGCAAGCACTACGTGACCCTGATTGTAATAGCGGCGGTGCT
TTCAACTTCACCCCTTTTGAAAAACATGGAGCCGCATAAATGTGAGGCTT
GGGAGTGGATTACCCTAGAGGCATTGGTTCAGAGGAGAGCAGAGTGTTTC
CTGCCATTACAGCATGCGCTTGACACGTTTCTGATGAAACCGGATATATT
GACGCAGGGGCTGAGCGGAGGGCTGAAAATGAACGAGAATTTACGGCAAT
GAGATTAAAAAAACAGAGATGATTTTGAAGTTGAATAAGCTAAAGTGAAG
ATTTCGCGGGGGGGACTGGTGGAGATTTGGTGCTGCCCGTGTTTTGATAT
ACATGCTCTTCGATTTATATCATATCTGAGAGGATTCGCTTTTCTTTTAT
GTGGTTGCCATGGTTTTTGGTAGAAATAGGCGTTGCTCGATAGTTTATGG
GATTTCAGCCCCTCTTGAGTAAGCATTCAAAGATTTCAGATCTGACCACA
CGACGGACATCATAAGTCCGATTCAACACACCCTTCATATTGCGAGTGTT
CGGTTTTGTGTCTTGTATTGAAAGACTGAAAACCCTGCGAGAAACCCGGA
CATGGAGTAAGTAAGGTGGAGTCGCTAGATTATCACGTGTTCTTCCCGGT
ACAAAAAAGTGATTTGACATTGGGCTGCAAGAAAGAAACTTCTACCCTCT
CTTAAA

protein sequence of jgi.p|Nanoce1779_2|593241

>mRNA_5951-protein ID=mRNA_5951-protein|Name=jgi.p|Nanoce1779_2|593241|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MSHMSSGCGDGNIPTEPVITPTPNTPTTNVCVGVGVLVHHKEHPGLVLIG
RRKGSHGSGSLALPGGHLEVNESVAQCAVREVEEECNLALDSTSVRLVGV
TQDVFSESAGKHYVTLIVIAAVLSTSPLLKNMEPHKCEAWEWITLEALVQ
RRAECFLPLQHALDTFLMKPDILTQGLSGGLKMNENLRQ*

mRNA from alignment at scaffold_14:150966..152363+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5951 ID=mRNA_5951|Name=jgi.p|Nanoce1779_2|593241|organism=Nannochloropsis oceanica|type=mRNA|length=1398bp|location=Sequence derived from alignment at scaffold_14:150966..152363+ (Nannochloropsis oceanica)
ACAGACCCACAGAAGCACAGACACGTCCAGGCATGAGCCACATGAGCAGT
GGCTGCGGTGATGGAAACATTCCGACAGAGGTAAGAAACTCTTTTCGTCT
TCATCGACCTCCTCCCCCCCTTTCATCCGTTGATCCTCCATTCTATATTC
TTGATTATTTCGTGACTCGCTATCCTGCCCGTACCGTATCATGTGGATCA
ACACTTAGTCAAGCTTGTATCTCGGCACCTTGTGGTAGCCTGTCGACCAT
TGCCACATGACTTGAAAACCACTCAAGAGGGAAAAGCTCTCATCAAGTCT
CTCCTTTGGTTTTGTCTAACCAGCTTTCTTGGCGTCCGGGGATCTTTTCC
AGATCTACACCGTATGCAAGACGGAGAGAACTTGCTTTCTCCTCATCTCA
TACCAGCTTCACTCAAACACAGCCTGTCATCACGCCTACCCCAAATACCC
CGACAACCAACGTCTGCGTCGGTGTGGGCGTCCTCGTCCACCACAAAGAG
CATCCGGGTCTCGTCTTGATCGGGCGACGGAAAGGTTCGCATGGTAGTGG
AAGCCTTGCACTTCCTGGGGGCCATTTGGAGGTGAATGAGAGTGTGGCCC
AGTGTGCTGTGCGGGAGGTGGAGGAAGAGTGCAACCTCGCCTTGGATTCG
ACAAGTGTGCGTTTGGTTGGCGTGACGCAAGATGTGTTTTCTGAATCGGC
GGGCAAGCACTACGTGACCCTGATTGTAATAGCGGCGGTGCTTTCAACTT
CACCCCTTTTGAAAAACATGGAGCCGCATAAATGTGAGGCTTGGGAGTGG
ATTACCCTAGAGGCATTGGTTCAGAGGAGAGCAGAGTGTTTCCTGCCATT
ACAGCATGCGCTTGACACGTTTCTGATGAAACCGGATATATTGACGCAGG
GGCTGAGCGGAGGGCTGAAAATGAACGAGAATTTACGGCAATGAGATTAA
AAAAACAGAGATGATTTTGAAGTTGAATAAGCTAAAGTGAAGATTTCGCG
GGGGGGACTGGTGGAGATTTGGTGCTGCCCGTGTTTTGATATACATGCTC
TTCGATTTATATCATATCTGAGAGGATTCGCTTTTCTTTTATGTGGTTGC
CATGGTTTTTGGTAGAAATAGGCGTTGCTCGATAGTTTATGGGATTTCAG
CCCCTCTTGAGTAAGCATTCAAAGATTTCAGATCTGACCACACGACGGAC
ATCATAAGTCCGATTCAACACACCCTTCATATTGCGAGTGTTCGGTTTTG
TGTCTTGTATTGAAAGACTGAAAACCCTGCGAGAAACCCGGACATGGAGT
AAGTAAGGTGGAGTCGCTAGATTATCACGTGTTCTTCCCGGTACAAAAAA
GTGATTTGACATTGGGCTGCAAGAAAGAAACTTCTACCCTCTCTTAAA

Coding sequence (CDS) from alignment at scaffold_14:150966..152363+

>mRNA_5951 ID=mRNA_5951|Name=jgi.p|Nanoce1779_2|593241|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_14:150966..152363+ (Nannochloropsis oceanica)
ATGAGCCACATGAGCAGTGGCTGCGGTGATGGAAACATTCCGACAGAGCC
TGTCATCACGCCTACCCCAAATACCCCGACAACCAACGTCTGCGTCGGTG
TGGGCGTCCTCGTCCACCACAAAGAGCATCCGGGTCTCGTCTTGATCGGG
CGACGGAAAGGTTCGCATGGTAGTGGAAGCCTTGCACTTCCTGGGGGCCA
TTTGGAGGTGAATGAGAGTGTGGCCCAGTGTGCTGTGCGGGAGGTGGAGG
AAGAGTGCAACCTCGCCTTGGATTCGACAAGTGTGCGTTTGGTTGGCGTG
ACGCAAGATGTGTTTTCTGAATCGGCGGGCAAGCACTACGTGACCCTGAT
TGTAATAGCGGCGGTGCTTTCAACTTCACCCCTTTTGAAAAACATGGAGC
CGCATAAATGTGAGGCTTGGGAGTGGATTACCCTAGAGGCATTGGTTCAG
AGGAGAGCAGAGTGTTTCCTGCCATTACAGCATGCGCTTGACACGTTTCT
GATGAAACCGGATATATTGACGCAGGGGCTGAGCGGAGGGCTGAAAATGA
ACGAGAATTTACGGCAATGAATGAGCCACATGAGCAGTGGCTGCGGTGAT
GGAAACATTCCGACAGAGCCTGTCATCACGCCTACCCCAAATACCCCGAC
AACCAACGTCTGCGTCGGTGTGGGCGTCCTCGTCCACCACAAAGAGCATC
CGGGTCTCGTCTTGATCGGGCGACGGAAAGGTTCGCATGGTAGTGGAAGC
CTTGCACTTCCTGGGGGCCATTTGGAGGTGAATGAGAGTGTGGCCCAGTG
TGCTGTGCGGGAGGTGGAGGAAGAGTGCAACCTCGCCTTGGATTCGACAA
GTGTGCGTTTGGTTGGCGTGACGCAAGATGTGTTTTCTGAATCGGCGGGC
AAGCACTACGTGACCCTGATTGTAATAGCGGCGGTGCTTTCAACTTCACC
CCTTTTGAAAAACATGGAGCCGCATAAATGTGAGGCTTGGGAGTGGATTA
CCCTAGAGGCATTGGTTCAGAGGAGAGCAGAGTGTTTCCTGCCATTACAG
CATGCGCTTGACACGTTTCTGATGAAACCGGATATATTGACGCAGGGGCT
GAGCGGAGGGCTGAAAATGAACGAGAATTTACGGCAATGA

Synonyms

Publications