jgi.p|Nanoce1779_2|567235, mRNA_7091 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567235
Unique NamemRNA_7091
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length858
Alignment locationscaffold_16:276861..277718 +

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Properties
Property NameValue
TranscriptId567321
TrackFilteredModels2
ProteinId567235
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:276861..277718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567235gene_7091Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567235mRNA_7091-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7091CDS_7091Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7091 ID=mRNA_7091|Name=jgi.p|Nanoce1779_2|567235|organism=Nannochloropsis oceanica|type=mRNA|length=858bp
ATGGGATGGGAGGGAGGATTATCCTCCACACCTCTTCCTTGCCTGATAAA
TATATTGAAGGAAGGTGGTGGGGTAGGCGGGGAGAAGACGGCATTGCTTC
CTCTTTGTTGGAAGCATATACGTGGTTGTGGCTACGCCAAGCAAAGCGGA
ATTGCGCTAGAAACCTTTTCGTCTGGAGCAGCAGCACCATCAGAATCAGC
AGCTATCGATCAGCAGCAGGCCCTATCGCGGACCAAAATCGAAATGATAT
TGGTCCACGTCGTGCGGTGGGGGATGTTACCCGACACTGACGCAGATAAG
GGGGGCTTTCGACGCTCCCTCGTCCGCCTAGTCGAGGCAAGTGCTGGTCG
CGTAAGTGTGTGGCAGTTGGGTATATGGTTGATCATGGCTTGTGGGCAGG
GGGAAGAGGTGCTGCCGCTGTTGCCTTCGTTGTATCGCCACGGCCTTCGG
GAGAAGTTCAAGGGGGAGAAGAAGTGTGAGGAGAATGAGGGGGAGAAAGA
GGAGGACTACGCGCTTGCTGATAGAACAGTGGAGACTTTACACAGAGAGA
TGCCGGAGGTAGGCGGGGCGATGATCAGGTGTGGGCTCTCGGCCCGGGCG
CTGGTATTAAGTTGGTACCAGCACTCATTTTGGGGTGTCTTGTCCGTGAC
TGAGCTTGCCATCAATGAGACCTTGAGGTTCCTTTACGGGCGCAAAGGGC
AGGTGGCCCTGGTCCTAGCCCTTTTTCGGCATGTGAGGGAGGAGTTATTG
AGGGCGGCGGCGCGGCAGGATGATATGCTCCGTCTCTTTCATCTCTTTTC
ACACGGGGTACGGCGCTTTGAGTTTACGCCCGAGGTGGTGGAGGACATGG
GCTTGTAA
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protein sequence of jgi.p|Nanoce1779_2|567235

>mRNA_7091-protein ID=mRNA_7091-protein|Name=jgi.p|Nanoce1779_2|567235|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MGWEGGLSSTPLPCLINILKEGGGVGGEKTALLPLCWKHIRGCGYAKQSG
IALETFSSGAAAPSESAAIDQQQALSRTKIEMILVHVVRWGMLPDTDADK
GGFRRSLVRLVEASAGRVSVWQLGIWLIMACGQGEEVLPLLPSLYRHGLR
EKFKGEKKCEENEGEKEEDYALADRTVETLHREMPEVGGAMIRCGLSARA
LVLSWYQHSFWGVLSVTELAINETLRFLYGRKGQVALVLALFRHVREELL
RAAARQDDMLRLFHLFSHGVRRFEFTPEVVEDMGL*
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mRNA from alignment at scaffold_16:276861..277718+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7091 ID=mRNA_7091|Name=jgi.p|Nanoce1779_2|567235|organism=Nannochloropsis oceanica|type=mRNA|length=858bp|location=Sequence derived from alignment at scaffold_16:276861..277718+ (Nannochloropsis oceanica)
ATGGGATGGGAGGGAGGATTATCCTCCACACCTCTTCCTTGCCTGATAAA
TATATTGAAGGAAGGTGGTGGGGTAGGCGGGGAGAAGACGGCATTGCTTC
CTCTTTGTTGGAAGCATATACGTGGTTGTGGCTACGCCAAGCAAAGCGGA
ATTGCGCTAGAAACCTTTTCGTCTGGAGCAGCAGCACCATCAGAATCAGC
AGCTATCGATCAGCAGCAGGCCCTATCGCGGACCAAAATCGAAATGATAT
TGGTCCACGTCGTGCGGTGGGGGATGTTACCCGACACTGACGCAGATAAG
GGGGGCTTTCGACGCTCCCTCGTCCGCCTAGTCGAGGCAAGTGCTGGTCG
CGTAAGTGTGTGGCAGTTGGGTATATGGTTGATCATGGCTTGTGGGCAGG
GGGAAGAGGTGCTGCCGCTGTTGCCTTCGTTGTATCGCCACGGCCTTCGG
GAGAAGTTCAAGGGGGAGAAGAAGTGTGAGGAGAATGAGGGGGAGAAAGA
GGAGGACTACGCGCTTGCTGATAGAACAGTGGAGACTTTACACAGAGAGA
TGCCGGAGGTAGGCGGGGCGATGATCAGGTGTGGGCTCTCGGCCCGGGCG
CTGGTATTAAGTTGGTACCAGCACTCATTTTGGGGTGTCTTGTCCGTGAC
TGAGCTTGCCATCAATGAGACCTTGAGGTTCCTTTACGGGCGCAAAGGGC
AGGTGGCCCTGGTCCTAGCCCTTTTTCGGCATGTGAGGGAGGAGTTATTG
AGGGCGGCGGCGCGGCAGGATGATATGCTCCGTCTCTTTCATCTCTTTTC
ACACGGGGTACGGCGCTTTGAGTTTACGCCCGAGGTGGTGGAGGACATGG
GCTTGTAA
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Coding sequence (CDS) from alignment at scaffold_16:276861..277718+

>mRNA_7091 ID=mRNA_7091|Name=jgi.p|Nanoce1779_2|567235|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_16:276861..277718+ (Nannochloropsis oceanica)
ATGGGATGGGAGGGAGGATTATCCTCCACACCTCTTCCTTGCCTGATAAA
TATATTGAAGGAAGGTGGTGGGGTAGGCGGGGAGAAGACGGCATTGCTTC
CTCTTTGTTGGAAGCATATACGTGGTTGTGGCTACGCCAAGCAAAGCGGA
ATTGCGCTAGAAACCTTTTCGTCTGGAGCAGCAGCACCATCAGAATCAGC
AGCTATCGATCAGCAGCAGGCCCTATCGCGGACCAAAATCGAAATGATAT
TGGTCCACGTCGTGCGGTGGGGGATGTTACCCGACACTGACGCAGATAAG
GGGGGCTTTCGACGCTCCCTCGTCCGCCTAGTCGAGGCAAGTGCTGGTCG
CGTAAGTGTGTGGCAGTTGGGTATATGGTTGATCATGGCTTGTGGGCAGG
GGGAAGAGGTGCTGCCGCTGTTGCCTTCGTTGTATCGCCACGGCCTTCGG
GAGAAGTTCAAGGGGGAGAAGAAGTGTGAGGAGAATGAGGGGGAGAAAGA
GGAGGACTACGCGCTTGCTGATAGAACAGTGGAGACTTTACACAGAGAGA
TGCCGGAGGTAGGCGGGGCGATGATCAGGTGTGGGCTCTCGGCCCGGGCG
CTGGTATTAAGTTGGTACCAGCACTCATTTTGGGGTGTCTTGTCCGTGAC
TGAGCTTGCCATCAATGAGACCTTGAGGTTCCTTTACGGGCGCAAAGGGC
AGGTGGCCCTGGTCCTAGCCCTTTTTCGGCATGTGAGGGAGGAGTTATTG
AGGGCGGCGGCGCGGCAGGATGATATGCTCCGTCTCTTTCATCTCTTTTC
ACACGGGGTACGGCGCTTTGAGTTTACGCCCGAGGTGGTGGAGGACATGG
GCTTGTAA
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Synonyms
Publications