jgi.p|Nanoce1779_2|595895, mRNA_7178 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595895
Unique NamemRNA_7178
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length928
Alignment locationscaffold_16:470405..471332 -

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Properties
Property NameValue
TranscriptId595981
TrackFilteredModels2
ProteinId595895
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:470405..471332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595895gene_7178Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595895mRNA_7178-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7178CDS_7178Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7178 ID=mRNA_7178|Name=jgi.p|Nanoce1779_2|595895|organism=Nannochloropsis oceanica|type=mRNA|length=928bp
CAGCCACAGCAGCCCAGAAGATGGAGCCCAAATCAATGACATCACTCCGT
CCACTTTTTTTGTTACTGCTCCTGGTTCCAGCCTCCGCCTTTCTGTCATT
TCCAAGAACATCCTCACTCTCAACGATGATCCATGCCCGCTGTTCGGCCT
CATGTCCTTTGGAGCTCAGCTTTCGCCAAGGCCTCCCTACGGATGCACCA
CTCATCCGCCAAAGTATGCGAGATGCGCGTATGAATCCTACATTTCTCAA
CCCCCAAAATTTTATCGTGGCGGAGCAGGGCAGCCAAGGGAAAGAGAAAG
AGACGGGTAGTGCGACGGTAGTCGGGTTCGGACAAGTCCGTCCTGTTGCC
GGCGCAAACGAGCATGTGTGGGAGCTGGCGTCTGTGTATGTTCTCCCTGC
AGCACGAGAACAAGGCGTGGGCTCCCAGATTGTCTCAAAATTAGTGCAGA
ATTTCTGCAATACCGACAAGGAAGGAGCCTCACCCCGTCGGCTGGTCCTC
CTCACACTGGCTGACACCGCCTCTTTCTACATCCCCCATTCCTTTGGGGT
GGTACCTGACCCGGTGCAAGCACAACCACCATTACCACCCATCTTAGTCC
TTGAATTTCTGGCTGGCTCGGTGGTGGCTCGATTGTCAAGAGGGCTGGGC
ACGAAGTTGGTGGTCATGGAGCTGGTCGGGAAGTAGCAGTAGCTGAGGCA
TGAGCAGAAAAATATAATAAAAATGAATAGAAGAGAGGCCTGTACAAAGC
CTTGTGATGTGTTTTCTGTTCACGTAAGAACATGACCAGAGCACGGCGCT
ATGTAGGCACAGCATAACCGGAATGCGACAGGCAGGTGTTTATTTAAGTG
CCGTGCAACTCAGATTTAGAAACGGTGAGAGAAAAAATATTTCACAATGA
GGTGTAGATCGGACGTTGACTGCTTACT
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protein sequence of jgi.p|Nanoce1779_2|595895

>mRNA_7178-protein ID=mRNA_7178-protein|Name=jgi.p|Nanoce1779_2|595895|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MEPKSMTSLRPLFLLLLLVPASAFLSFPRTSSLSTMIHARCSASCPLELS
FRQGLPTDAPLIRQSMRDARMNPTFLNPQNFIVAEQGSQGKEKETGSATV
VGFGQVRPVAGANEHVWELASVYVLPAAREQGVGSQIVSKLVQNFCNTDK
EGASPRRLVLLTLADTASFYIPHSFGVVPDPVQAQPPLPPILVLEFLAGS
VVARLSRGLGTKLVVMELVGK*
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mRNA from alignment at scaffold_16:470405..471332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7178 ID=mRNA_7178|Name=jgi.p|Nanoce1779_2|595895|organism=Nannochloropsis oceanica|type=mRNA|length=928bp|location=Sequence derived from alignment at scaffold_16:470405..471332- (Nannochloropsis oceanica)
CAGCCACAGCAGCCCAGAAGATGGAGCCCAAATCAATGACATCACTCCGT
CCACTTTTTTTGTTACTGCTCCTGGTTCCAGCCTCCGCCTTTCTGTCATT
TCCAAGAACATCCTCACTCTCAACGATGATCCATGCCCGCTGTTCGGCCT
CATGTCCTTTGGAGCTCAGCTTTCGCCAAGGCCTCCCTACGGATGCACCA
CTCATCCGCCAAAGTATGCGAGATGCGCGTATGAATCCTACATTTCTCAA
CCCCCAAAATTTTATCGTGGCGGAGCAGGGCAGCCAAGGGAAAGAGAAAG
AGACGGGTAGTGCGACGGTAGTCGGGTTCGGACAAGTCCGTCCTGTTGCC
GGCGCAAACGAGCATGTGTGGGAGCTGGCGTCTGTGTATGTTCTCCCTGC
AGCACGAGAACAAGGCGTGGGCTCCCAGATTGTCTCAAAATTAGTGCAGA
ATTTCTGCAATACCGACAAGGAAGGAGCCTCACCCCGTCGGCTGGTCCTC
CTCACACTGGCTGACACCGCCTCTTTCTACATCCCCCATTCCTTTGGGGT
GGTACCTGACCCGGTGCAAGCACAACCACCATTACCACCCATCTTAGTCC
TTGAATTTCTGGCTGGCTCGGTGGTGGCTCGATTGTCAAGAGGGCTGGGC
ACGAAGTTGGTGGTCATGGAGCTGGTCGGGAAGTAGCAGTAGCTGAGGCA
TGAGCAGAAAAATATAATAAAAATGAATAGAAGAGAGGCCTGTACAAAGC
CTTGTGATGTGTTTTCTGTTCACGTAAGAACATGACCAGAGCACGGCGCT
ATGTAGGCACAGCATAACCGGAATGCGACAGGCAGGTGTTTATTTAAGTG
CCGTGCAACTCAGATTTAGAAACGGTGAGAGAAAAAATATTTCACAATGA
GGTGTAGATCGGACGTTGACTGCTTACT
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Coding sequence (CDS) from alignment at scaffold_16:470405..471332-

>mRNA_7178 ID=mRNA_7178|Name=jgi.p|Nanoce1779_2|595895|organism=Nannochloropsis oceanica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_16:470405..471332- (Nannochloropsis oceanica)
ATGGAGCCCAAATCAATGACATCACTCCGTCCACTTTTTTTGTTACTGCT
CCTGGTTCCAGCCTCCGCCTTTCTGTCATTTCCAAGAACATCCTCACTCT
CAACGATGATCCATGCCCGCTGTTCGGCCTCATGTCCTTTGGAGCTCAGC
TTTCGCCAAGGCCTCCCTACGGATGCACCACTCATCCGCCAAAGTATGCG
AGATGCGCGTATGAATCCTACATTTCTCAACCCCCAAAATTTTATCGTGG
CGGAGCAGGGCAGCCAAGGGAAAGAGAAAGAGACGGGTAGTGCGACGGTA
GTCGGGTTCGGACAAGTCCGTCCTGTTGCCGGCGCAAACGAGCATGTGTG
GGAGCTGGCGTCTGTGTATGTTCTCCCTGCAGCACGAGAACAAGGCGTGG
GCTCCCAGATTGTCTCAAAATTAGTGCAGAATTTCTGCAATACCGACAAG
GAAGGAGCCTCACCCCGTCGGCTGGTCCTCCTCACACTGGCTGACACCGC
CTCTTTCTACATCCCCCATTCCTTTGGGGTGGTACCTGACCCGGTGCAAG
CACAACCACCATTACCACCCATCTTAGTCCTTGAATTTCTGGCTGGCTCG
GTGGTGGCTCGATTGTCAAGAGGGCTGGGCACGAAGTTGGTGGTCATGGA
GCTGGTCGGGAAGTAG
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Synonyms
Publications