jgi.p|Nanoce1779_2|125878, mRNA_6724 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|125878
Unique NamemRNA_6724
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length718
Alignment locationscaffold_18:545172..546820 +

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Properties
Property NameValue
TranscriptId125964
TrackFilteredModels2
ProteinId125878
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:545172..546820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|125878gene_6724Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|125878mRNA_6724-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6724CDS_6724Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6724 ID=mRNA_6724|Name=jgi.p|Nanoce1779_2|125878|organism=Nannochloropsis oceanica|type=mRNA|length=718bp
GGTAATTCATGTGCAGGAAAGGAGGGTTTCTGATTCCTCCATTTCCCCCC
ACTTTACCCACTGCTGTCGATACCACAACAACGACACCCCTTCCACGTAC
CGCTTGTCATAGACGTAGGCCTGGAAGCTGCCTTGGAGATTGAAGCGCCA
GCTCATCCACAAGACCAATGTTGTGACCAGCAAAGCAACCCAAGCCCCTG
CCGACAGGGCCTGTACAGCCTCGGGGAAGAACATACGTCGACACTGGAAA
GTCGCCTTGTTGGGATGATGCACAGGCCGCACGCATCCTCGGCAGAACAA
GAGAAAAGGAAGCTTAATGCAATGGCGACAGCTACAGGGGCTATCCTGCA
TGTCCAGGCCAGAGCCGCGCGCGGCTTGCGGAATGTCGAGATTCTGGGCT
TGAAGCAAGACCCTTACTTGAGGCTGCGAGCGGGGAACCAGGTGTTTCAG
ACGTGTGTTGTCAAAGATGGAGGTGGTATGGCCAGCTGGAATGAGAGTTT
TCAGATTCCGATCCCAAATGTGACGGAAAGAGAATTTCTCTTCCTGACTG
TTTTGGACCACAACACCCTCACCGACGACACAGAGATTGGCAGCGCAAAA
CTTTCCCTGATCGACGTTTCCTCCCAATTTCAATAAAGCCTACGCCTTTG
GCCAAACCGGTGCCTATAGCCAATGGCAGTGACTCGCTTTACCCGCACCA
GCAGTATAAGCAGCAGCA
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protein sequence of jgi.p|Nanoce1779_2|125878

>mRNA_6724-protein ID=mRNA_6724-protein|Name=jgi.p|Nanoce1779_2|125878|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MMHRPHASSAEQEKRKLNAMATATGAILHVQARAARGLRNVEILGLKQDP
YLRLRAGNQVFQTCVVKDGGGMASWNESFQIPIPNVTEREFLFLTVLDHN
TLTDDTEIGSAKLSLIDVSSQFQ*
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mRNA from alignment at scaffold_18:545172..546820+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6724 ID=mRNA_6724|Name=jgi.p|Nanoce1779_2|125878|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp|location=Sequence derived from alignment at scaffold_18:545172..546820+ (Nannochloropsis oceanica)
GGTAATTCATGTGCAGGAAAGGAGGGTTTCTGATTCCTCCATTTCCCCCC
ACTTTACCCACTGCTGTCGATACCACAACAACGACACCCCTTCCACGTAC
CGCTTGTCATAGACGTAGGCCTGGAAGCTGCCTTGGAGATTGAAGCGCCA
GCTCATCCACAAGACCAATGTTGTGACCAGCAAAGCAACCCAAGCCCCTG
CCGACAGGGCCTGTACAGCCTCGGGGAAGAACATACGTCGACACTGGAAA
GTCGCCTTGTTGGGATGATGGTAAGGAGTGAATTGTGGCAGGAAGTGTTT
AGAAAGATATGACTTCGTAAAAAAAAGCACTTTCAGCAGCCTGTCGATGT
TTAAATACTCTTGTCGTGCCAGTTCTTCTTGCTTGTGCGGCGTGTAGGGC
ACGAAAAGTGGAAGGGCGATGCTGCTTGTTCTTTTTGCGGGGCTCGCCTA
TCGCTGTGTTGCTGTCTGGGGGCTTGGAGGTCCCTCGCCGTCTTGCTGCG
TCACTTCATATCATACCTTTCTCGATCTCGAGGGTGTACATTCCCCTTGC
TTCAAATGAGAAACGCATCAAATCAGTTCTTATCTACAGACTCATCTATG
GTCACCACCAACAAAAAAAAATGAAAGTTGAAGTGGGCCATTTTTGACCG
CTTCCCTGCCTGCTCACCACACCAGCACTCGTTCTCTCCCCCCCCCCCCA
AAGCACAGGCCGCACGCATCCTCGGCAGAACAAGAGAAAAGGAAGCTTAA
TGCAATGGCGACAGCTACAGGGGCTATCCTGCATGTCCAGGGTACGCCCA
AAGTGTTTTCTCTCTCTAGCCTACCGCGGCGCTGCTACATTCCTCTCCCT
TGCAATCCATTTCCCTACCCATGTCATTGGTGTGTTAACATACCTTTCCT
ACACAAATTTGGACATACTTCTACCCTATGACAGCCAGAGCCGCGCGCGG
CTTGCGGAATGTCGAGATTCTGGGCTTGAAGCAAGACCCTTACTTGAGGC
TGCGAGCGGGGAACCAGGTGTTTCAGACGTGTGTTGTCAAAGATGGAGGT
GGTATGGCCAGCTGGAATGAGAGTTTTCAGATTCCGATCCCAAATGTGAC
GGAAAGGTACGTGTCTGTATTCTTTTGTCGAGGAACGAGGCGATGAAGTC
CGACTGTGTGTAGAAAGAAAGCCCTACAGTAGGTATGACTTGTACGATGC
GGTAACTTTGATCCTGTACCATTCCCCCCATTGAGTGATTCAAGCTTGAC
TGGTTTTGTGCCCTGATTTCTCAATTGTGACATCGTGACATATTATATTT
CACGTAATCTCTACGCCTTCCCCACCCTTCTCTACAGAGAATTTCTCTTC
CTGACTGTTTTGGACCACAACACCCTCACCGACGACACAGAGATTGGCAG
CGCAAAACTTTCCCTGATCGACGTTTCCTCCCAATTTCAAGTGAGTTGCT
TTGATATCTTTGACAAGCACGCAAATAAAGTTGGTGTGGTGGACCTAGCC
CTGCGTCTAGAACGCGTTTGCTTACCCTTTGGTGCTTCAATCCCTACACC
TGCGGCACCTCCAGTAAAGCCTACGCCTTTGGCCAAACCGGTGCCTATAG
CCAATGGCAGTGACTCGCTTTACCCGCACCAGCAGTATAAGCAGCAGCA
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Coding sequence (CDS) from alignment at scaffold_18:545172..546820+

>mRNA_6724 ID=mRNA_6724|Name=jgi.p|Nanoce1779_2|125878|organism=Nannochloropsis oceanica|type=CDS|length=1860bp|location=Sequence derived from alignment at scaffold_18:545172..546820+ (Nannochloropsis oceanica)
ATGATGCACAGGCCGCACGCATCCTCGGCAGAACAAGAGAAAAGGAAGCT
TAATGCAATGGCGACAGCTACAGGGGCTATCCTGCATGTCCAGGCCAGAG
CCGCGCGCGGCTTGCGGAATGTCGAGATTCTGGGCTTGAAGCAAGACCCT
TACTTGAGGCTGCGAGCGGGGAACCAGGTGTTTCAGACGTGTGTTGTCAA
AGATGGAGGTGGTATGGCCAGCTGGAATGAGAGTTTTCAGATTCCGATCC
CAAATGTGACGGAAAGAGAATTTCTCTTCCTGACTGTTTTGGACCACAAC
ACCCTCACCGACGACACAGAGATTGGCAGCGCAAAACTTTCCCTGATCGA
CGTTTCCTCCCAATTTCAATAAATGATGCACAGGCCGCACGCATCCTCGG
CAGAACAAGAGAAAAGGAAGCTTAATGCAATGGCGACAGCTACAGGGGCT
ATCCTGCATGTCCAGGCCAGAGCCGCGCGCGGCTTGCGGAATGTCGAGAT
TCTGGGCTTGAAGCAAGACCCTTACTTGAGGCTGCGAGCGGGGAACCAGG
TGTTTCAGACGTGTGTTGTCAAAGATGGAGGTGGTATGGCCAGCTGGAAT
GAGAGTTTTCAGATTCCGATCCCAAATGTGACGGAAAGAGAATTTCTCTT
CCTGACTGTTTTGGACCACAACACCCTCACCGACGACACAGAGATTGGCA
GCGCAAAACTTTCCCTGATCGACGTTTCCTCCCAATTTCAATAAATGATG
CACAGGCCGCACGCATCCTCGGCAGAACAAGAGAAAAGGAAGCTTAATGC
AATGGCGACAGCTACAGGGGCTATCCTGCATGTCCAGGCCAGAGCCGCGC
GCGGCTTGCGGAATGTCGAGATTCTGGGCTTGAAGCAAGACCCTTACTTG
AGGCTGCGAGCGGGGAACCAGGTGTTTCAGACGTGTGTTGTCAAAGATGG
AGGTGGTATGGCCAGCTGGAATGAGAGTTTTCAGATTCCGATCCCAAATG
TGACGGAAAGAGAATTTCTCTTCCTGACTGTTTTGGACCACAACACCCTC
ACCGACGACACAGAGATTGGCAGCGCAAAACTTTCCCTGATCGACGTTTC
CTCCCAATTTCAATAAATGATGCACAGGCCGCACGCATCCTCGGCAGAAC
AAGAGAAAAGGAAGCTTAATGCAATGGCGACAGCTACAGGGGCTATCCTG
CATGTCCAGGCCAGAGCCGCGCGCGGCTTGCGGAATGTCGAGATTCTGGG
CTTGAAGCAAGACCCTTACTTGAGGCTGCGAGCGGGGAACCAGGTGTTTC
AGACGTGTGTTGTCAAAGATGGAGGTGGTATGGCCAGCTGGAATGAGAGT
TTTCAGATTCCGATCCCAAATGTGACGGAAAGAGAATTTCTCTTCCTGAC
TGTTTTGGACCACAACACCCTCACCGACGACACAGAGATTGGCAGCGCAA
AACTTTCCCTGATCGACGTTTCCTCCCAATTTCAATAAATGATGCACAGG
CCGCACGCATCCTCGGCAGAACAAGAGAAAAGGAAGCTTAATGCAATGGC
GACAGCTACAGGGGCTATCCTGCATGTCCAGGCCAGAGCCGCGCGCGGCT
TGCGGAATGTCGAGATTCTGGGCTTGAAGCAAGACCCTTACTTGAGGCTG
CGAGCGGGGAACCAGGTGTTTCAGACGTGTGTTGTCAAAGATGGAGGTGG
TATGGCCAGCTGGAATGAGAGTTTTCAGATTCCGATCCCAAATGTGACGG
AAAGAGAATTTCTCTTCCTGACTGTTTTGGACCACAACACCCTCACCGAC
GACACAGAGATTGGCAGCGCAAAACTTTCCCTGATCGACGTTTCCTCCCA
ATTTCAATAA
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Synonyms
Publications