jgi.p|Nanoce1779_2|597320, mRNA_6549 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597320
Unique NamemRNA_6549
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1705
Alignment locationscaffold_18:136205..137909 -

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Properties
Property NameValue
TranscriptId597406
TrackFilteredModels2
ProteinId597320
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:136205..137909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597320gene_6549Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597320mRNA_6549-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6549CDS_6549Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6549 ID=mRNA_6549|Name=jgi.p|Nanoce1779_2|597320|organism=Nannochloropsis oceanica|type=mRNA|length=1705bp
GGGAGGGTGATGCAGAAGGAGTACATGCTGGTGGAGTGGTGGAAGGTTGC
TGTATTCGTGGGTCGAGGGTGAGAGGGGATAGGAGGGGAGGGATGAGAAT
GCTATTGCGTCGAAGCTTCGCTGGCCACCGAGCATGGCCCCAAAATAAGT
ATGAAGAAATCATGTTGGCCACGTAGATAGGCGCAACACGCTTTTGCCGC
GAACGGGGGGTTTTGGTCGTAGTGGTTGTTTTGGAGTGTCAGCCTTAAAA
GGCAAACATAAGGAGGAGCGGGCTTGGAGGCAGGGCAAACGACTGGCATT
TGAACACACCATCGACGCCCCCCCGGCAGACTCGCATTTTCCCTCTTCTC
TATCGTCATCGTTGCTGCCACGTGGTGTGTCGGGGGGGTTCTGTGTGCGC
TGGAAAGAGGCCAATTGTGTGAATTCTGGGCGATGGTGGCGATGGGCCGT
TAAAGCGCGCTCACTTGCGATTGGGGCAAGCCTTCCCCACGCCCCAGTAA
CGCATCGTTGCGACTGCGGCCGAGCTTTCCCTCCACCATCGTTCCATCCA
CCTGTCTGTCCCTGATCCCTAATTATACCAGCCTTGGTCATGACGTTCAC
CGTCTGAGTGGCTTGCTGGGATATCATCATTATCCCATCGCCAATTTCTA
TTCCCTTGCTTCCGCCGACGGCGTCATGCTAGCATCCCTTCCGCCATAAC
GCACGCTGCACCCCAACCACCACCATTACAAGCGCAGGTGAAAGATGATA
CGAAAACCACCAGTCGCCGCCTTCGCCCTCCGTCTCCTCCTCCTTCTCCT
GCTGATCCTACCCTCCACCCACGCCGTCAGCCTCGATGTCCCTCCCCGCG
ACAAAATCTGTCTTTACCAGTACTACGAGGCAGGAGACACGGGCACGGCC
GAGGTCTTTATAGTGAACGGAGGTAATTTGGACATCGGCGTGAGCGTGGA
AGGGCCTTTCGCGGACGACAAGGATGGTGCACCCAGTATGACGACACAGG
AAACCAAAGTGTTATACAACGCAGTAGTGGCGTCCTCCAGCGCCTTTCTC
AACCAAGAACATCCTACGGGCGTGACCGCCTCGGCGGACGGCCTCGAAAT
CACATGGCCCGCCAAGCCTGGTGCGTATGCTTTGTGCCTGGACAACACCA
TGAGTCAACTGCAAACCAAGCTGGTGGAATTCTCCTTCCCCGCCCCGGAA
GGAAAGGGTGATGGGCACGAGGATGATTTTGACTTGGACGCGGCGTTGGC
CGGGACGGATAATGCTGATAATGGCACGATTCCTGACAACATCAGGCAGT
CGTACAAGGCGGATTTGGCCTTGTTGAAACACAGTGCGGACCGCATCGCG
CGGACCTTGGGGGATGTCCAGCAGAAGCAACAGAAGGAGAGGCATCGGCT
AGCGTTACAGACGGCGGCGAACCAGAATAACCACCACAAGATGGTGGTGT
CGAGTATGTTTGAGACGGTAGTATTTATTGGCGTGTCATTGTTTCAATTA
TTTTGGGTGCGGAGGTGGTTTGAAGGGAGGGGGTTGAGGGTCTCATCAAG
GTCGAGGGAGTGGGCATGAGGCGGCGAGGGAGGGAGTCCACGGTAGCAGA
GGTGGAAAGAAATACTACTAGAAAGAAACGACTGATGTAAAACGGAGGCA
AAGGAATGATAGAAAAAAAAAATGAGGGGAAAAGAAGGAGAAAATTGAAA
AGTAG
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protein sequence of jgi.p|Nanoce1779_2|597320

>mRNA_6549-protein ID=mRNA_6549-protein|Name=jgi.p|Nanoce1779_2|597320|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MIRKPPVAAFALRLLLLLLLILPSTHAVSLDVPPRDKICLYQYYEAGDTG
TAEVFIVNGGNLDIGVSVEGPFADDKDGAPSMTTQETKVLYNAVVASSSA
FLNQEHPTGVTASADGLEITWPAKPGAYALCLDNTMSQLQTKLVEFSFPA
PEGKGDGHEDDFDLDAALAGTDNADNGTIPDNIRQSYKADLALLKHSADR
IARTLGDVQQKQQKERHRLALQTAANQNNHHKMVVSSMFETVVFIGVSLF
QLFWVRRWFEGRGLRVSSRSREWA*
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mRNA from alignment at scaffold_18:136205..137909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6549 ID=mRNA_6549|Name=jgi.p|Nanoce1779_2|597320|organism=Nannochloropsis oceanica|type=mRNA|length=1705bp|location=Sequence derived from alignment at scaffold_18:136205..137909- (Nannochloropsis oceanica)
GGGAGGGTGATGCAGAAGGAGTACATGCTGGTGGAGTGGTGGAAGGTTGC
TGTATTCGTGGGTCGAGGGTGAGAGGGGATAGGAGGGGAGGGATGAGAAT
GCTATTGCGTCGAAGCTTCGCTGGCCACCGAGCATGGCCCCAAAATAAGT
ATGAAGAAATCATGTTGGCCACGTAGATAGGCGCAACACGCTTTTGCCGC
GAACGGGGGGTTTTGGTCGTAGTGGTTGTTTTGGAGTGTCAGCCTTAAAA
GGCAAACATAAGGAGGAGCGGGCTTGGAGGCAGGGCAAACGACTGGCATT
TGAACACACCATCGACGCCCCCCCGGCAGACTCGCATTTTCCCTCTTCTC
TATCGTCATCGTTGCTGCCACGTGGTGTGTCGGGGGGGTTCTGTGTGCGC
TGGAAAGAGGCCAATTGTGTGAATTCTGGGCGATGGTGGCGATGGGCCGT
TAAAGCGCGCTCACTTGCGATTGGGGCAAGCCTTCCCCACGCCCCAGTAA
CGCATCGTTGCGACTGCGGCCGAGCTTTCCCTCCACCATCGTTCCATCCA
CCTGTCTGTCCCTGATCCCTAATTATACCAGCCTTGGTCATGACGTTCAC
CGTCTGAGTGGCTTGCTGGGATATCATCATTATCCCATCGCCAATTTCTA
TTCCCTTGCTTCCGCCGACGGCGTCATGCTAGCATCCCTTCCGCCATAAC
GCACGCTGCACCCCAACCACCACCATTACAAGCGCAGGTGAAAGATGATA
CGAAAACCACCAGTCGCCGCCTTCGCCCTCCGTCTCCTCCTCCTTCTCCT
GCTGATCCTACCCTCCACCCACGCCGTCAGCCTCGATGTCCCTCCCCGCG
ACAAAATCTGTCTTTACCAGTACTACGAGGCAGGAGACACGGGCACGGCC
GAGGTCTTTATAGTGAACGGAGGTAATTTGGACATCGGCGTGAGCGTGGA
AGGGCCTTTCGCGGACGACAAGGATGGTGCACCCAGTATGACGACACAGG
AAACCAAAGTGTTATACAACGCAGTAGTGGCGTCCTCCAGCGCCTTTCTC
AACCAAGAACATCCTACGGGCGTGACCGCCTCGGCGGACGGCCTCGAAAT
CACATGGCCCGCCAAGCCTGGTGCGTATGCTTTGTGCCTGGACAACACCA
TGAGTCAACTGCAAACCAAGCTGGTGGAATTCTCCTTCCCCGCCCCGGAA
GGAAAGGGTGATGGGCACGAGGATGATTTTGACTTGGACGCGGCGTTGGC
CGGGACGGATAATGCTGATAATGGCACGATTCCTGACAACATCAGGCAGT
CGTACAAGGCGGATTTGGCCTTGTTGAAACACAGTGCGGACCGCATCGCG
CGGACCTTGGGGGATGTCCAGCAGAAGCAACAGAAGGAGAGGCATCGGCT
AGCGTTACAGACGGCGGCGAACCAGAATAACCACCACAAGATGGTGGTGT
CGAGTATGTTTGAGACGGTAGTATTTATTGGCGTGTCATTGTTTCAATTA
TTTTGGGTGCGGAGGTGGTTTGAAGGGAGGGGGTTGAGGGTCTCATCAAG
GTCGAGGGAGTGGGCATGAGGCGGCGAGGGAGGGAGTCCACGGTAGCAGA
GGTGGAAAGAAATACTACTAGAAAGAAACGACTGATGTAAAACGGAGGCA
AAGGAATGATAGAAAAAAAAAATGAGGGGAAAAGAAGGAGAAAATTGAAA
AGTAG
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Coding sequence (CDS) from alignment at scaffold_18:136205..137909-

>mRNA_6549 ID=mRNA_6549|Name=jgi.p|Nanoce1779_2|597320|organism=Nannochloropsis oceanica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_18:136205..137909- (Nannochloropsis oceanica)
ATGATACGAAAACCACCAGTCGCCGCCTTCGCCCTCCGTCTCCTCCTCCT
TCTCCTGCTGATCCTACCCTCCACCCACGCCGTCAGCCTCGATGTCCCTC
CCCGCGACAAAATCTGTCTTTACCAGTACTACGAGGCAGGAGACACGGGC
ACGGCCGAGGTCTTTATAGTGAACGGAGGTAATTTGGACATCGGCGTGAG
CGTGGAAGGGCCTTTCGCGGACGACAAGGATGGTGCACCCAGTATGACGA
CACAGGAAACCAAAGTGTTATACAACGCAGTAGTGGCGTCCTCCAGCGCC
TTTCTCAACCAAGAACATCCTACGGGCGTGACCGCCTCGGCGGACGGCCT
CGAAATCACATGGCCCGCCAAGCCTGGTGCGTATGCTTTGTGCCTGGACA
ACACCATGAGTCAACTGCAAACCAAGCTGGTGGAATTCTCCTTCCCCGCC
CCGGAAGGAAAGGGTGATGGGCACGAGGATGATTTTGACTTGGACGCGGC
GTTGGCCGGGACGGATAATGCTGATAATGGCACGATTCCTGACAACATCA
GGCAGTCGTACAAGGCGGATTTGGCCTTGTTGAAACACAGTGCGGACCGC
ATCGCGCGGACCTTGGGGGATGTCCAGCAGAAGCAACAGAAGGAGAGGCA
TCGGCTAGCGTTACAGACGGCGGCGAACCAGAATAACCACCACAAGATGG
TGGTGTCGAGTATGTTTGAGACGGTAGTATTTATTGGCGTGTCATTGTTT
CAATTATTTTGGGTGCGGAGGTGGTTTGAAGGGAGGGGGTTGAGGGTCTC
ATCAAGGTCGAGGGAGTGGGCATGA
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Synonyms
Publications