jgi.p|Nanoce1779_2|598902, mRNA_7478 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598902
Unique NamemRNA_7478
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length557
Alignment locationscaffold_20:63512..64068 +

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Properties
Property NameValue
TranscriptId598988
TrackFilteredModels2
ProteinId598902
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:63512..64068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598902gene_7478Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598902mRNA_7478-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7478CDS_7478Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7478 ID=mRNA_7478|Name=jgi.p|Nanoce1779_2|598902|organism=Nannochloropsis oceanica|type=mRNA|length=557bp
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGGAGAGGGGTGG
GAGTGAAACATTCCATGTCTTACACACGCACTTTAATGACCGAGGCTCGT
GTCCCCTCTGGTGCTGCTGCCTTGGGCCATAGAAGCAGAGGGAATAGCAT
TGAGATCGACCATGTAAGGGAGGGTGGTAGAGAGGAAGGGATGGAGAAGA
AGTGTGCCTTGTGCATGAGTTCGCGGAAAAACCCGGCAGTGACCCCATGT
GGCCACGTCTTTTGTTGGAAGTGTGTGTTGGCATGGTGCAGCGAGCAACC
CGAGTGTCCTTTGTGTCGGAGCAAGTGCGCACCGCAATCGATACTGCACA
TTGTGAACATGAGTGTGTGAGGTGGGTGGAGGGTCTCCCTCCCTCCTTTT
CTTTTACCGGGGGCATAAAGAGGAGAAGTGTAGATATATGAAAGGTGAAT
CGGATGAAGGAAAGGGAAGAGAAAACTTGAGAAAAAGTACAGAAGCAAAA
GGAAGCCAGTCATTTGTATTGAACCACAAGGCTTCGAACATGTATGATCT
TACTTTG
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protein sequence of jgi.p|Nanoce1779_2|598902

>mRNA_7478-protein ID=mRNA_7478-protein|Name=jgi.p|Nanoce1779_2|598902|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSYTRTLMTEARVPSGAAALGHRSRGNSIEIDHVREGGREEGMEKKCALC
MSSRKNPAVTPCGHVFCWKCVLAWCSEQPECPLCRSKCAPQSILHIVNMS
V*
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mRNA from alignment at scaffold_20:63512..64068+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7478 ID=mRNA_7478|Name=jgi.p|Nanoce1779_2|598902|organism=Nannochloropsis oceanica|type=mRNA|length=557bp|location=Sequence derived from alignment at scaffold_20:63512..64068+ (Nannochloropsis oceanica)
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGGAGAGGGGTGG
GAGTGAAACATTCCATGTCTTACACACGCACTTTAATGACCGAGGCTCGT
GTCCCCTCTGGTGCTGCTGCCTTGGGCCATAGAAGCAGAGGGAATAGCAT
TGAGATCGACCATGTAAGGGAGGGTGGTAGAGAGGAAGGGATGGAGAAGA
AGTGTGCCTTGTGCATGAGTTCGCGGAAAAACCCGGCAGTGACCCCATGT
GGCCACGTCTTTTGTTGGAAGTGTGTGTTGGCATGGTGCAGCGAGCAACC
CGAGTGTCCTTTGTGTCGGAGCAAGTGCGCACCGCAATCGATACTGCACA
TTGTGAACATGAGTGTGTGAGGTGGGTGGAGGGTCTCCCTCCCTCCTTTT
CTTTTACCGGGGGCATAAAGAGGAGAAGTGTAGATATATGAAAGGTGAAT
CGGATGAAGGAAAGGGAAGAGAAAACTTGAGAAAAAGTACAGAAGCAAAA
GGAAGCCAGTCATTTGTATTGAACCACAAGGCTTCGAACATGTATGATCT
TACTTTG
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Coding sequence (CDS) from alignment at scaffold_20:63512..64068+

>mRNA_7478 ID=mRNA_7478|Name=jgi.p|Nanoce1779_2|598902|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_20:63512..64068+ (Nannochloropsis oceanica)
ATGTCTTACACACGCACTTTAATGACCGAGGCTCGTGTCCCCTCTGGTGC
TGCTGCCTTGGGCCATAGAAGCAGAGGGAATAGCATTGAGATCGACCATG
TAAGGGAGGGTGGTAGAGAGGAAGGGATGGAGAAGAAGTGTGCCTTGTGC
ATGAGTTCGCGGAAAAACCCGGCAGTGACCCCATGTGGCCACGTCTTTTG
TTGGAAGTGTGTGTTGGCATGGTGCAGCGAGCAACCCGAGTGTCCTTTGT
GTCGGAGCAAGTGCGCACCGCAATCGATACTGCACATTGTGAACATGAGT
GTGTGA
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Synonyms
Publications