jgi.p|Nanoce1779_2|600112, mRNA_7808 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600112
Unique NamemRNA_7808
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length901
Alignment locationscaffold_21:379574..380697 +

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Properties
Property NameValue
TranscriptId600198
TrackFilteredModels2
ProteinId600112
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:379574..380697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600112gene_7808Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600112mRNA_7808-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7808CDS_7808Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7808 ID=mRNA_7808|Name=jgi.p|Nanoce1779_2|600112|organism=Nannochloropsis oceanica|type=mRNA|length=901bp
ACAGGTGATCATTCTCTCTCGAGCAGGTCACGATGGTTTCGCGGTTCATT
CGCCCCATATTCTCCTGGAGCCAGGATGCTTTCCGAGTCGCCCCGCTAGC
CCTCGCTGCTAGTGCCCGTGGGAGTCTCATGGCCGCGTTGGGTGGGGCCT
TTCAACGACAACACCCGCAGCAGCAGCACTCGTTACAGTCAGCGCACATG
CACCAACAGCAGCGGCACCGGTGGGCTGGCACCGCGGAATTCAATGGGAG
CGAGCAGGCGGCCATGGAGTTTTTGAACGATGGGGCACAGTTCGAGGGCT
TGGCTAAACGGTGGAGCGCCCGCAAGGTATGTTGGATAGCAAGTAAATTT
CAAAGTCTCGTCTTAGGCAGTCCTGCCCGCTTTTCCCTCTGTGGAGTACT
TTCTATAGAAAATGGCGCATTAAAAATGACACGCGTGGGTGGGGGGGCAT
CATTTCGCATATCTTTCCCCTGCGTCGATCGGCCAGTTCCACCCGTCCTT
TCCTCTTCCCTCCCTCCTCTCCTCCCTTTCCCTCATTCTCCTCCCCGTGA
TCGCAGTATTACATCAAGCCCTTCGTGCAACGCAAGCAACGCTACAACCG
TTGGGTCCGTCGTCGCTCCCTAGAGAAGATAAATCACATTCTGAATAAAG
TGCGCTACGAGAAAGGAATTGCCAAGTCGGCCAACCCGCAGCTGGCCGCC
ATCTTCAGCGGCAAGGCAGCAGCACAAGCAGCGGTGGCGGCTGAGGTGGA
AGCAAGTATGATCAGGAAGTAACACCTACGACGGAGAGGAGGGAACGTGT
TGGTTGCAGGAGGACAAATGTGATGACTTTGAGCAAGGGCGAAATGTGCA
TATAAACTTCGCTTGGGCGACTTGAAAAAGAAAGACACACTGAACGAGGA
G
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protein sequence of jgi.p|Nanoce1779_2|600112

>mRNA_7808-protein ID=mRNA_7808-protein|Name=jgi.p|Nanoce1779_2|600112|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MVSRFIRPIFSWSQDAFRVAPLALAASARGSLMAALGGAFQRQHPQQQHS
LQSAHMHQQQRHRWAGTAEFNGSEQAAMEFLNDGAQFEGLAKRWSARKVC
WIASKFQSLVLGSPARFSLCGVLSIENGALKMTRVGGGASFRISFPCVDR
PVPPVLSSSLPPLLPFPHSPPRDRSITSSPSCNASNATTVGSVVAP*
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mRNA from alignment at scaffold_21:379574..380697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7808 ID=mRNA_7808|Name=jgi.p|Nanoce1779_2|600112|organism=Nannochloropsis oceanica|type=mRNA|length=1124bp|location=Sequence derived from alignment at scaffold_21:379574..380697+ (Nannochloropsis oceanica)
ACAGGTGATCATTCTCTCTCGAGCAGGTCACGATGGTTTCGCGGTTCATT
CGCCCCATATTCTCCTGGAGCCAGGATGCTTTCCGAGTCGCCCCGCTAGC
CCTCGCTGCTAGTGCCCGTGGGAGTCTCATGGCCGCGTTGGGTGGGGCCT
TTCAACGACAACACCCGCAGCAGCAGCACTCGTTACAGTCAGCGCACATG
CACCAACAGCAGCGGCACCGGTGGGCTGGCACCGCGGAATTCAATGGGAG
CGAGCAGGCGGTGAGCGCTGGAGATTTGATGGGTTGGCAAGGGGGAAGGT
TAGATGTGATGCTAAGCTAAAGTAAAACAGCTTCTTGATATGCACGCGTT
CATATTCATGCACCAATAACTACAGGCCATGGAGTTTTTGAACGATGGGG
CACAGTTCGAGGGCTTGGCTAAACGGTGGAGCGCCCGCAAGGTATGTTGG
ATAGCAAGTAAATTTCAAAGTCTCGTCTTAGGCAGTCCTGCCCGCTTTTC
CCTCTGTGGAGTACTTTCTATAGAAAATGGCGCATTAAAAATGACACGCG
TGGGTGGGGGGGCATCATTTCGCATATCTTTCCCCTGCGTCGATCGGCCA
GTTCCACCCGTCCTTTCCTCTTCCCTCCCTCCTCTCCTCCCTTTCCCTCA
TTCTCCTCCCCGTGATCGCAGTATTACATCAAGCCCTTCGTGCAACGCAA
GCAACGCTACAACCGTTGGGTCCGTCGTCGCTCCCTAGAGAAGATAAATC
ACATTCTGAATAAAGTGCGCTACGAGAAAGGAATGTACGTGCAACAATGG
AGGGAGGGATGGAGGTAGGGATGAAGGGCAAGTTGGATGAATATTCACAC
GTCACGCCAACTTTGCTCCTTTCCTTTCCTCGCTTTGAACAGTGCCAAGT
CGGCCAACCCGCAGCTGGCCGCCATCTTCAGCGGCAAGGCAGCAGCACAA
GCAGCGGTGGCGGCTGAGGTGGAAGCAAGTATGATCAGGAAGTAACACCT
ACGACGGAGAGGAGGGAACGTGTTGGTTGCAGGAGGACAAATGTGATGAC
TTTGAGCAAGGGCGAAATGTGCATATAAACTTCGCTTGGGCGACTTGAAA
AAGAAAGACACACTGAACGAGGAG
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Coding sequence (CDS) from alignment at scaffold_21:379574..380697+

>mRNA_7808 ID=mRNA_7808|Name=jgi.p|Nanoce1779_2|600112|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_21:379574..380697+ (Nannochloropsis oceanica)
ATGGTTTCGCGGTTCATTCGCCCCATATTCTCCTGGAGCCAGGATGCTTT
CCGAGTCGCCCCGCTAGCCCTCGCTGCTAGTGCCCGTGGGAGTCTCATGG
CCGCGTTGGGTGGGGCCTTTCAACGACAACACCCGCAGCAGCAGCACTCG
TTACAGTCAGCGCACATGCACCAACAGCAGCGGCACCGGTGGGCTGGCAC
CGCGGAATTCAATGGGAGCGAGCAGGCGGCCATGGAGTTTTTGAACGATG
GGGCACAGTTCGAGGGCTTGGCTAAACGGTGGAGCGCCCGCAAGGTATGT
TGGATAGCAAGTAAATTTCAAAGTCTCGTCTTAGGCAGTCCTGCCCGCTT
TTCCCTCTGTGGAGTACTTTCTATAGAAAATGGCGCATTAAAAATGACAC
GCGTGGGTGGGGGGGCATCATTTCGCATATCTTTCCCCTGCGTCGATCGG
CCAGTTCCACCCGTCCTTTCCTCTTCCCTCCCTCCTCTCCTCCCTTTCCC
TCATTCTCCTCCCCGTGATCGCAGTATTACATCAAGCCCTTCGTGCAACG
CAAGCAACGCTACAACCGTTGGGTCCGTCGTCGCTCCCTAGATGGTTTCG
CGGTTCATTCGCCCCATATTCTCCTGGAGCCAGGATGCTTTCCGAGTCGC
CCCGCTAGCCCTCGCTGCTAGTGCCCGTGGGAGTCTCATGGCCGCGTTGG
GTGGGGCCTTTCAACGACAACACCCGCAGCAGCAGCACTCGTTACAGTCA
GCGCACATGCACCAACAGCAGCGGCACCGGTGGGCTGGCACCGCGGAATT
CAATGGGAGCGAGCAGGCGGCCATGGAGTTTTTGAACGATGGGGCACAGT
TCGAGGGCTTGGCTAAACGGTGGAGCGCCCGCAAGGTATGTTGGATAGCA
AGTAAATTTCAAAGTCTCGTCTTAGGCAGTCCTGCCCGCTTTTCCCTCTG
TGGAGTACTTTCTATAGAAAATGGCGCATTAAAAATGACACGCGTGGGTG
GGGGGGCATCATTTCGCATATCTTTCCCCTGCGTCGATCGGCCAGTTCCA
CCCGTCCTTTCCTCTTCCCTCCCTCCTCTCCTCCCTTTCCCTCATTCTCC
TCCCCGTGATCGCAGTATTACATCAAGCCCTTCGTGCAACGCAAGCAACG
CTACAACCGTTGGGTCCGTCGTCGCTCCCTAG
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Synonyms
Publications