jgi.p|Nanoce1779_2|673012, mRNA_7794 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|673012
Unique Name	mRNA_7794
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1622
Alignment location	scaffold_21:346349..348292 +

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Properties


Property Name	Value
TranscriptId	673098
Track	FilteredModels2
ProteinId	673012

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:346349..348292 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673012	gene_7794	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673012	mRNA_7794-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7794	CDS_7794	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:346349..348292+
coding sequence from alignment at scaffold_21:346349..348292+

mRNA sequence

>mRNA_7794 ID=mRNA_7794|Name=jgi.p|Nanoce1779_2|673012|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp
ATGTCAATGTCGACCACTCCTGAAAGTGGCAATAAAAATGGGTCCAAGCG
AAGAGGAGTGTTGTCCAGTAAGGTTTGGGGTTTGGAGTTTGATCTAGTCT
TGACGGCTTTGCAATCCTTCAGGCGGAAGAAAATCAGTAAGACCATGAAG
CTGAAGCGGAAAGAGGTGGATGATGTCCTCGGTGGGGAAGATGCTTGGGC
AGCCGCGAATCGTACCACCGCAGCTTGCCCGTATTGTGACAACATGGAGG
CATTCTTCGTCCAGATGCAAATTCGGTCGGCGGATGAGCCCATGACGACA
TTTTATAGATGCACGCTCTGTGCCAACAGGTGGTCGGGCGACTAATCAGA
GAGGGAAAGGTGGGTAGGTGTGCATACACGAGTGGAGGCCTTAACAACAA
TAGCAAACGAAGGAATAAAGTACAACGACATTCAGGTTTTTGTTTTGTTT
GATGCATCTTGCAAATCATTTTATCGATGGGCTTCGAGACAGCGCAACAG
GGGCGGGGGAGAGTTTTACGGGATGACCGGAAAGAGGAACACTTTCCGAA
GGCTATTGAGTCATTCCCGCGCACGATGGCAAGTACGCAGACAAGCAGAC
AGAACATACAATCAAATAGCAAGCAGGCAGAAAGAGTGATTAACGTGCAA
AAGAGCGTGAGCATCAAAAATTGCTTTGAATCTTCTCTCGTGAAACCATA
AAAAAATCGAGAAGTGGCATGTAATTTCGTAATCCTTCCTCGTTGGGTTG
CCGTGATTCGGGCTATCTCTGTTTCCCTCTTCCCCCCCCCCCCACTCACA
TCCTCGCTCCTATCTATCGAGAATTGTCTACACGAATATACTAACGTGAA
AGATAATTTGCGATGTATTCGCTTAATAAAAATCGGACCTACATTCATTA
CAAAGAAGAATATTTGCTAGTCCGCTGCTTTTCTCTCTTTTGTTGTTAGT
TCCGGCCAACTCGCCCCTTCTTCTTTCCCCTCTTCCTTGTCATTCCGACG
ATACTTTCCTTCACTCTCTCTTTTCCTCTTCGCCCTACCCCCGCCTTACT
TCCCGGCAGTGGGTTTAAATGGATCGTACCAGTTGATTCGAGTCCTATTT
CTTCTTCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCC
CCTTATTCTTCGCCTCCTTCTTCTTTTTCATCATCTAGTTTGTCTTCTAT
TCTGGATCCAGACGAGCGGGTCGGGGGTTGTAATTTATTCCCTTCTCGTT
CTCGCTCGTGGCATAGACCGATGGTATCACGTCCAATTCTCTCAGGAGCG
GCAGCAGTAAAAGCGACCACCACAGGAATAGCAGCCATTACAATCACCGC
TGGCGCGCAAAAGAAGATGAGTCAAACAGCTTCCTCACTCGCTCTCCCTC
TCACACCCACACGAATCGCTCTCTGCCCACTGCCTCAGCTTTGCCGGTCC
ACGTCTCCCTCCCTTCTTCCCTTCTCCATGTCCTTGGAGAAAAGAGCAGA
GATTCAAAAGAGCATATTTCATTCCTCTCCCTCTGCTCCATCAACTCCAA
GCAAGCAAAATTCATCCCTCAATTCTCACGCTGCCACAAAAACATCACGA
TCACCATCCCCTCCCCCGCCCC

protein sequence of jgi.p|Nanoce1779_2|673012

>mRNA_7794-protein ID=mRNA_7794-protein|Name=jgi.p|Nanoce1779_2|673012|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MVSRPILSGAAAVKATTTGIAAITITAGAQKKMSQTASSLALPLTPTRIA
LCPLPQLCRSTSPSLLPFSMSLEKRAEIQKSIFHSSPSAPSTPSKQNSSL
NSHAATKTSRSPSPPPP

mRNA from alignment at scaffold_21:346349..348292+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7794 ID=mRNA_7794|Name=jgi.p|Nanoce1779_2|673012|organism=Nannochloropsis oceanica|type=mRNA|length=1944bp|location=Sequence derived from alignment at scaffold_21:346349..348292+ (Nannochloropsis oceanica)
ATGTCAATGTCGACCACTCCTGAAAGTGGCAATAAAAATGGGTCCAAGCG
AAGAGGAGTGTTGTCCAGTAAGGTTTGGTAAGTCTCGGCCAACATGAAAT
CGAGGTCACCTCAATCAGCGATGGCCTGCGCGGCGTGCCGTACTCGCGAC
CCCTTTGTCTGTTAGTAGATATCCATTTAGAAAATCATACCACAAGCCCT
CACATCATTTCTATCCTTACAATTACAGGGGTTTGGAGTTTGATCTAGTC
TTGACGGCTTTGCAATCCTTCAGGCGGAAGGTAGTATCTCCTTACCATCG
GTTATCGCAACACTACACAACCTGTCTGTCCTGCATAACCTAGTTCATGA
AGTTCTGCCCCATCTGCTCCAATCTATTGCTTGTGGAGCTCGGGGAGATC
AGCTTTCGATTTTGCTGCCAGACCTGCCCCTACATTTCGTCTATCACCAA
GAAAATCAGTAAGACCATGAAGCTGAAGCGGAAAGAGGTGGATGATGTCC
TCGGTGGGGAAGATGCTTGGGCAGCCGCGAATCGTACCACCGCAGCTTGC
CCGTATTGTGACAACATGGAGGCATTCTTCGTCCAGATGCAAATTCGGTC
GGCGGATGAGCCCATGACGACATTTTATAGATGCACGCTCTGTGCCAACA
GGTGGTCGGGCGACTAATCAGAGAGGGAAAGGTGGGTAGGTGTGCATACA
CGAGTGGAGGCCTTAACAACAATAGCAAACGAAGGAATAAAGTACAACGA
CATTCAGGTTTTTGTTTTGTTTGATGCATCTTGCAAATCATTTTATCGAT
GGGCTTCGAGACAGCGCAACAGGGGCGGGGGAGAGTTTTACGGGATGACC
GGAAAGAGGAACACTTTCCGAAGGCTATTGAGTCATTCCCGCGCACGATG
GCAAGTACGCAGACAAGCAGACAGAACATACAATCAAATAGCAAGCAGGC
AGAAAGAGTGATTAACGTGCAAAAGAGCGTGAGCATCAAAAATTGCTTTG
AATCTTCTCTCGTGAAACCATAAAAAAATCGAGAAGTGGCATGTAATTTC
GTAATCCTTCCTCGTTGGGTTGCCGTGATTCGGGCTATCTCTGTTTCCCT
CTTCCCCCCCCCCCCACTCACATCCTCGCTCCTATCTATCGAGAATTGTC
TACACGAATATACTAACGTGAAAGATAATTTGCGATGTATTCGCTTAATA
AAAATCGGACCTACATTCATTACAAAGAAGAATATTTGCTAGTCCGCTGC
TTTTCTCTCTTTTGTTGTTAGTTCCGGCCAACTCGCCCCTTCTTCTTTCC
CCTCTTCCTTGTCATTCCGACGATACTTTCCTTCACTCTCTCTTTTCCTC
TTCGCCCTACCCCCGCCTTACTTCCCGGCAGTGGGTTTAAATGGATCGTA
CCAGTTGATTCGAGTCCTATTTCTTCTTCTCCTCCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTCCCCCTTATTCTTCGCCTCCTTCTTCTTTTT
CATCATCTAGTTTGTCTTCTATTCTGGATCCAGACGAGCGGGTCGGGGGT
TGTAATTTATTCCCTTCTCGTTCTCGCTCGTGGCATAGACCGATGGTATC
ACGTCCAATTCTCTCAGGAGCGGCAGCAGTAAAAGCGACCACCACAGGAA
TAGCAGCCATTACAATCACCGCTGGCGCGCAAAAGAAGATGAGTCAAACA
GCTTCCTCACTCGCTCTCCCTCTCACACCCACACGAATCGCTCTCTGCCC
ACTGCCTCAGCTTTGCCGGTCCACGTCTCCCTCCCTTCTTCCCTTCTCCA
TGTCCTTGGAGAAAAGAGCAGAGATTCAAAAGAGCATATTTCATTCCTCT
CCCTCTGCTCCATCAACTCCAAGCAAGCAAAATTCATCCCTCAATTCTCA
CGCTGCCACAAAAACATCACGATCACCATCCCCTCCCCCGCCCC

Coding sequence (CDS) from alignment at scaffold_21:346349..348292+

>mRNA_7794 ID=mRNA_7794|Name=jgi.p|Nanoce1779_2|673012|organism=Nannochloropsis oceanica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_21:346349..348292+ (Nannochloropsis oceanica)
ATGGTATCACGTCCAATTCTCTCAGGAGCGGCAGCAGTAAAAGCGACCAC
CACAGGAATAGCAGCCATTACAATCACCGCTGGCGCGCAAAAGAAGATGA
GTCAAACAGCTTCCTCACTCGCTCTCCCTCTCACACCCACACGAATCGCT
CTCTGCCCACTGCCTCAGCTTTGCCGGTCCACGTCTCCCTCCCTTCTTCC
CTTCTCCATGTCCTTGGAGAAAAGAGCAGAGATTCAAAAGAGCATATTTC
ATTCCTCTCCCTCTGCTCCATCAACTCCAAGCAAGCAAAATTCATCCCTC
AATTCTCACGCTGCCACAAAAACATCACGATCACCATCCCCTCCCCCGCC
C

Synonyms

Publications