jgi.p|Nanoce1779_2|599979, mRNA_7775 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599979
Unique Name	mRNA_7775
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2383
Alignment location	scaffold_21:293732..296276 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600065
Track	FilteredModels2
ProteinId	599979

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:293732..296276 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599979	gene_7775	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599979	mRNA_7775-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7775	CDS_7775	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:293732..296276+
coding sequence from alignment at scaffold_21:293732..296276+

mRNA sequence

>mRNA_7775 ID=mRNA_7775|Name=jgi.p|Nanoce1779_2|599979|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp
GGACGAGAAGGAGGACGAGAGGGGGGGAGAGGAGGCGGAGGAGGAGGAGG
CGCAGAAGGGGGAGGTGGAGGAGGAGCAGGAGCAGGAGCAGGAGCAGGAG
ATAATTGAGCGTTGGGCGAGGAGGGAAATGAAAGAAGAGAGGGAAATGCG
TAGTCCTTGTACAAAACACAACCCAGTTGCATAGAGACATTGTGTTATAC
GGAAATGGTGGTATTAAAGCAAGAACGGACCAAAAACAATAAAAAGAATT
CTCGAAGATTTTGTGCTTGTCTTATTTGTATCGATAGGCCCAGGGGACTC
CTCGTTTTAGGGCCGCGGACCTACTACCATCAAGGTTTAGGGGGTCTGTC
GGAGAGATTTCCTCTTTAAGGGACTCTCCTTGCTTGCACACGCGGTACGA
GCGACCTTGGCGAGTGGGGAATCGATTAAGTTGAGTTAATCCAGGGAGAT
GGTTGGCGAGAGCGAGCGCCTCGGCCGGGGCCGGTCTGCCACTACACTGA
CCACTGACCAAGCTACTAGCAAGTAGCCAAAGAAACAACGACCGAACGCT
GACCTCCTCCCCCTTTTCCCAACCCGACCATGGTTCCCCTACCTGCTAGC
CCCATCCCTGCCCTGCAGGTGGCCCGAGCTCGGTGCCTTGGATTAGAGGA
CAAGCCACCAACGGGTTTGAGGAACACCGAAGGAGTCGTTACTCGGCTTT
GTTGGCTTGACGCTGGCGTCACCCATACCCACCCGTGCACTCCTCTATCT
TAACCATAATCACCACATCGACAGGAGTTATGGCTCACGACGACAGGGAC
AACTACAACGATGATAATGGGGACAATCAGCCTCTCCAAACACTCCCCAC
CGCATCAACAGCCTCGTCGTCATCACCACCACCTTATCCCCACGACACGC
AGCAGCGGCAGACCGCGGCCAAGCACGCCATCAACGTGCTCAAGTCCTTC
ATTGGCTCCAACTTCCTGTCCGTGCCCTTTGCTTTTGCCGCGGCCGGCTC
GCTGCTAGGCCCACTGGCTGTCGCCTTAATTGCCAGCGTCAGTGGCCTTG
GGTGTCTCCTTCTCGTTCAAATCCGCATAGACCTGCAACAACGGCTGCAG
CACCAACAACAGCACCGGCCGGCGGTCGAGACGTACGCGCAGGTGGCTGG
AGCGCTATTGGGGAGACCCGGCTACTACCTCGTCGAGGTGTTTTTGATAT
TAACCCAGGTGGGGTACTGCATTGGCTATGTCATTTATATGAGCACGGCC
ATTCATCAATTCGCAGGAGAGTCTTTATCCCTAGTTTATATTTTCTTCGG
CCTGGTCACTCTTCCACTGATCTGCTTGTGCCTTATTCCAGATTTAAAGC
ATTTTTTGCCGTTCGCTTTCTTGAGTAATGTGGCGTTGCTGGTGGGTTTT
CTCGCTGTACTTATCGCGAGCGTGTCCCGGGCGCGGGATCAGGGGATATT
TTACGTTACTTGGGGTGTGGTGGATGCACGTAAGCTACCGTTGGCATTTG
GAAATATTGTGGCGTCATTTGAGGGGATTGGGACGATTTTGAGCGTGGAG
GGGAGTATGGCCCGTGATCAAGTGAGGGGATATTACCCTCTGTTGTTGAA
ACAAACCCTGCTGCTTGTAACAATTTTGTTTTCTGCTTTTGGGATAGTGG
GCTTCGGGGCGTTTGGAAAAGAATTGTGCAGTGTGGTTCTGACAAATTTG
CCCATGGGGGTATGTGCGGACGTGGCGCGGGTCGCTCTGATCGTAGGATT
GTTTTGTACGTATGGCTTTCAAATGTATCCGGTATATCAAATGATCGACT
TGCGGCTGCTTGGAGAAGATGTAGACACCTCATCGCCCTATTTTTTCCCA
GGAGGTTCGTCCCTCCTAGCTCATGACGGATATGGTGCCTTGCACTTCTC
ACCATCACTTGCTGATGCTGCTCCTGCAGCTGCTGTTGGCACCGCCCTCG
GACGAAGAAATATAAGAGCTGCGACCTACTTAGGGGTGCGTGTGGGCGTA
GTGCTTTTTACGTCCATAGTTGCTTACCTTCTGCCTGAATTTGAGCTGCT
GGTGGCATTAGTGGGATCCATAGGCGCGGGCATGCTTGCATTTATAATGC
CGGGAATTTTGGGGTGGGCCATGTATAAGGAGACGGCCACGAGGAAAGAG
AAGGGGAGGTATGGCTGTCTGATTGCGTTTGGGGTTGTTGGGGGGGTAAT
TGGAGCGGGCCACGCGCTGCATGACTTGATTTATGGGCAATCGCAGTGCT
AGACTATCTATGAAACAATGGACTGTCTTATTAGTAAGCATGTGTTTTAA
AAGAGGCATGTCATAAAGAAATGCGTGTGTGCACTCAGCAAATAAAGTAC
ACTGGGAAGGAACACCTCTTTTTATGAGCGTCC

protein sequence of jgi.p|Nanoce1779_2|599979

>mRNA_7775-protein ID=mRNA_7775-protein|Name=jgi.p|Nanoce1779_2|599979|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MAHDDRDNYNDDNGDNQPLQTLPTASTASSSSPPPYPHDTQQRQTAAKHA
INVLKSFIGSNFLSVPFAFAAAGSLLGPLAVALIASVSGLGCLLLVQIRI
DLQQRLQHQQQHRPAVETYAQVAGALLGRPGYYLVEVFLILTQVGYCIGY
VIYMSTAIHQFAGESLSLVYIFFGLVTLPLICLCLIPDLKHFLPFAFLSN
VALLVGFLAVLIASVSRARDQGIFYVTWGVVDARKLPLAFGNIVASFEGI
GTILSVEGSMARDQVRGYYPLLLKQTLLLVTILFSAFGIVGFGAFGKELC
SVVLTNLPMGVCADVARVALIVGLFCTYGFQMYPVYQMIDLRLLGEDVDT
SSPYFFPGGSSLLAHDGYGALHFSPSLADAAPAAAVGTALGRRNIRAATY
LGVRVGVVLFTSIVAYLLPEFELLVALVGSIGAGMLAFIMPGILGWAMYK
ETATRKEKGRYGCLIAFGVVGGVIGAGHALHDLIYGQSQC*

mRNA from alignment at scaffold_21:293732..296276+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7775 ID=mRNA_7775|Name=jgi.p|Nanoce1779_2|599979|organism=Nannochloropsis oceanica|type=mRNA|length=2545bp|location=Sequence derived from alignment at scaffold_21:293732..296276+ (Nannochloropsis oceanica)
GGACGAGAAGGAGGACGAGAGGGGGGGAGAGGAGGCGGAGGAGGAGGAGG
CGCAGAAGGGGGAGGTGGAGGAGGAGCAGGAGCAGGAGCAGGAGCAGGAG
ATAATTGAGCGTTGGGCGAGGAGGGAAATGAAAGAAGAGAGGGAAATGCG
TAGTCCTTGTACAAAACACAACCCAGTTGCATAGAGACATTGTGTTATAC
GGAAATGGTGGTATTAAAGCAAGAACGGACCAAAAACAATAAAAAGAATT
CTCGAAGATTTTGTGCTTGTCTTATTTGTATCGATAGGCCCAGGGGACTC
CTCGTTTTAGGGCCGCGGACCTACTACCATCAAGGTTTAGGGGGTCTGTC
GGAGAGATTTCCTCTTTAAGGGACTCTCCTTGCTTGCACACGCGGTACGA
GCGACCTTGGCGAGTGGGGAATCGATTAAGTTGAGTTAATCCAGGGAGAT
GGTTGGCGAGAGCGAGCGCCTCGGCCGGGGCCGGTCTGCCACTACACTGA
CCACTGACCAAGCTACTAGCAAGTAGCCAAAGAAACAACGACCGAACGCT
GACCTCCTCCCCCTTTTCCCAACCCGACCATGGTTCCCCTACCTGCTAGC
CCCATCCCTGCCCTGCAGGTGGCCCGAGCTCGGTGCCTTGGATTAGAGGA
CAAGCCACCAACGGGTTTGAGGAACACCGAAGGAGTCGTTACTCGGCTTT
GTTGGCTTGACGCTGGCGTCACCCATACCCACCCGTGCACTCCTCTATCT
TAACCATAATCACCACATCGACAGGAGTTATGGCTCACGACGACAGGGAC
AACTACAACGATGATAATGGGGACAATCAGCCTCTCCAAACACTCCCCAC
CGCATCAACAGCCTCGTCGTCATCACCACCACCTTATCCCCACGACACGC
AGCAGCGGCAGACCGCGGCCAAGCACGCCATCAACGTGCTCAAGTCCTTC
ATTGGCTCCAACTTCCTGTCCGTGCCCTTTGCTTTTGCCGCGGCCGGCTC
GCTGCTAGGCCCACTGGCTGTCGCCTTAATTGCCAGCGTCAGTGGCCTTG
GGTGTCTCCTTCTCGTTCAAATCCGCATAGACCTGCAACAACGGCTGCAG
CACCAACAACAGCACCGGCCGGCGGTCGAGACGTACGCGCAGGTGGCTGG
AGCGCTATTGGGGAGACCCGGCTACTACCTCGTCGAGGTGTTTTTGATAT
TAACCCAGGTGGGGTACTGCATTGGCTATGTCATTTATATGAGCACGGCC
ATTCATCAATTCGCAGGAGAGTCTTTATCCCTAGTTTATATTTTCTTCGG
CCTGGTCACTCTTCCACTGATCTGCTTGTGCCTTATTCCAGATTTAAAGC
ATTTTTTGCCGTTCGCTTTCTTGAGTAATGTGGCGTTGCTGGTGGGTTTT
CTCGCTGTACTTATCGCGAGCGTGTCCCGGGCGCGGGATCAGGGGATATT
TTACGTTACTTGGGGTGTGGTGGATGCACGTAAGCTACCGTTGGCATTTG
GAAATATTGTGGCGTCATTTGAGGGGATTGGGACGATTTTGAGCGTGGAG
GGGAGTATGGCCCGTGATCAAGTGAGGGGATATTACCCTCTGTTGTTGAA
ACAAACCCTGCTGCTTGTAACAATTTTGTTTTCTGCTTTTGGGATAGTGG
GCTTCGGGGCGTTTGGAAAAGAATTGTGCAGTGTGGTTCTGACAAATTTG
CCCATGGGGGTATGTGCGGACGTGGCGCGGGTCGCTCTGATCGTAGGATT
GTTTTGTACGTGTAAGTGATGGTGGTTGTGTGGGCTTGTGTGCTCGGGGA
CGGTGAGAGGGGCGGAGAGGACGTGAGCGGAAGAGATGGGCAACAAAGAA
TAGGCATGACCTCACCGCCCACCCTCATCCCTCACTCTTCTCCCTGCACC
TTATTCTCTACACTCCTGGATAGATGGCTTTCAAATGTATCCGGTATATC
AAATGATCGACTTGCGGCTGCTTGGAGAAGATGTAGACACCTCATCGCCC
TATTTTTTCCCAGGAGGTTCGTCCCTCCTAGCTCATGACGGATATGGTGC
CTTGCACTTCTCACCATCACTTGCTGATGCTGCTCCTGCAGCTGCTGTTG
GCACCGCCCTCGGACGAAGAAATATAAGAGCTGCGACCTACTTAGGGGTG
CGTGTGGGCGTAGTGCTTTTTACGTCCATAGTTGCTTACCTTCTGCCTGA
ATTTGAGCTGCTGGTGGCATTAGTGGGATCCATAGGCGCGGGCATGCTTG
CATTTATAATGCCGGGAATTTTGGGGTGGGCCATGTATAAGGAGACGGCC
ACGAGGAAAGAGAAGGGGAGGTATGGCTGTCTGATTGCGTTTGGGGTTGT
TGGGGGGGTAATTGGAGCGGGCCACGCGCTGCATGACTTGATTTATGGGC
AATCGCAGTGCTAGACTATCTATGAAACAATGGACTGTCTTATTAGTAAG
CATGTGTTTTAAAAGAGGCATGTCATAAAGAAATGCGTGTGTGCACTCAG
CAAATAAAGTACACTGGGAAGGAACACCTCTTTTTATGAGCGTCC

Coding sequence (CDS) from alignment at scaffold_21:293732..296276+

>mRNA_7775 ID=mRNA_7775|Name=jgi.p|Nanoce1779_2|599979|organism=Nannochloropsis oceanica|type=CDS|length=2946bp|location=Sequence derived from alignment at scaffold_21:293732..296276+ (Nannochloropsis oceanica)
ATGGCTCACGACGACAGGGACAACTACAACGATGATAATGGGGACAATCA
GCCTCTCCAAACACTCCCCACCGCATCAACAGCCTCGTCGTCATCACCAC
CACCTTATCCCCACGACACGCAGCAGCGGCAGACCGCGGCCAAGCACGCC
ATCAACGTGCTCAAGTCCTTCATTGGCTCCAACTTCCTGTCCGTGCCCTT
TGCTTTTGCCGCGGCCGGCTCGCTGCTAGGCCCACTGGCTGTCGCCTTAA
TTGCCAGCGTCAGTGGCCTTGGGTGTCTCCTTCTCGTTCAAATCCGCATA
GACCTGCAACAACGGCTGCAGCACCAACAACAGCACCGGCCGGCGGTCGA
GACGTACGCGCAGGTGGCTGGAGCGCTATTGGGGAGACCCGGCTACTACC
TCGTCGAGGTGTTTTTGATATTAACCCAGGTGGGGTACTGCATTGGCTAT
GTCATTTATATGAGCACGGCCATTCATCAATTCGCAGGAGAGTCTTTATC
CCTAGTTTATATTTTCTTCGGCCTGGTCACTCTTCCACTGATCTGCTTGT
GCCTTATTCCAGATTTAAAGCATTTTTTGCCGTTCGCTTTCTTGAGTAAT
GTGGCGTTGCTGGTGGGTTTTCTCGCTGTACTTATCGCGAGCGTGTCCCG
GGCGCGGGATCAGGGGATATTTTACGTTACTTGGGGTGTGGTGGATGCAC
GTAAGCTACCGTTGGCATTTGGAAATATTGTGGCGTCATTTGAGGGGATT
GGGACGATTTTGAGCGTGGAGGGGAGTATGGCCCGTGATCAAGTGAGGGG
ATATTACCCTCTGTTGTTGAAACAAACCCTGCTGCTTGTAACAATTTTGT
TTTCTGCTTTTGGGATAGTGGGCTTCGGGGCGTTTGGAAAAGAATTGTGC
AGTGTGGTTCTGACAAATTTGCCCATGGGGGTATGTGCGGACGTGGCGCG
GGTCGCTCTGATCGTAGGATTGTTTTGTACGTATGGCTTTCAAATGTATC
CGGTATATCAAATGATCGACTTGCGGCTGCTTGGAGAAGATGTAGACACC
TCATCGCCCTATTTTTTCCCAGGAGGTTCGTCCCTCCTAGCTCATGACGG
ATATGGTGCCTTGCACTTCTCACCATCACTTGCTGATGCTGCTCCTGCAG
CTGCTGTTGGCACCGCCCTCGGACGAAGAAATATAAGAGCTGCGACCTAC
TTAGGGGTGCGTGTGGGCGTAGTGCTTTTTACGTCCATAGTTGCTTACCT
TCTGCCTGAATTTGAGCTGCTGGTGGCATTAGTGGGATCCATAGGCGCGG
GCATGCTTGCATTTATAATGCCGGGAATTTTGGGGTGGGCCATGTATAAG
GAGACGGCCACGAGGAAAGAGAAGGGGAGGTATGGCTGTCTGATTGCGTT
TGGGGTTGTTGGGGGGGTAATTGGAGCGGGCCACGCGCTGCATGACTTGA
TTTATGGGCAATCGCAGTGCTAGATGGCTCACGACGACAGGGACAACTAC
AACGATGATAATGGGGACAATCAGCCTCTCCAAACACTCCCCACCGCATC
AACAGCCTCGTCGTCATCACCACCACCTTATCCCCACGACACGCAGCAGC
GGCAGACCGCGGCCAAGCACGCCATCAACGTGCTCAAGTCCTTCATTGGC
TCCAACTTCCTGTCCGTGCCCTTTGCTTTTGCCGCGGCCGGCTCGCTGCT
AGGCCCACTGGCTGTCGCCTTAATTGCCAGCGTCAGTGGCCTTGGGTGTC
TCCTTCTCGTTCAAATCCGCATAGACCTGCAACAACGGCTGCAGCACCAA
CAACAGCACCGGCCGGCGGTCGAGACGTACGCGCAGGTGGCTGGAGCGCT
ATTGGGGAGACCCGGCTACTACCTCGTCGAGGTGTTTTTGATATTAACCC
AGGTGGGGTACTGCATTGGCTATGTCATTTATATGAGCACGGCCATTCAT
CAATTCGCAGGAGAGTCTTTATCCCTAGTTTATATTTTCTTCGGCCTGGT
CACTCTTCCACTGATCTGCTTGTGCCTTATTCCAGATTTAAAGCATTTTT
TGCCGTTCGCTTTCTTGAGTAATGTGGCGTTGCTGGTGGGTTTTCTCGCT
GTACTTATCGCGAGCGTGTCCCGGGCGCGGGATCAGGGGATATTTTACGT
TACTTGGGGTGTGGTGGATGCACGTAAGCTACCGTTGGCATTTGGAAATA
TTGTGGCGTCATTTGAGGGGATTGGGACGATTTTGAGCGTGGAGGGGAGT
ATGGCCCGTGATCAAGTGAGGGGATATTACCCTCTGTTGTTGAAACAAAC
CCTGCTGCTTGTAACAATTTTGTTTTCTGCTTTTGGGATAGTGGGCTTCG
GGGCGTTTGGAAAAGAATTGTGCAGTGTGGTTCTGACAAATTTGCCCATG
GGGGTATGTGCGGACGTGGCGCGGGTCGCTCTGATCGTAGGATTGTTTTG
TACGTATGGCTTTCAAATGTATCCGGTATATCAAATGATCGACTTGCGGC
TGCTTGGAGAAGATGTAGACACCTCATCGCCCTATTTTTTCCCAGGAGGT
TCGTCCCTCCTAGCTCATGACGGATATGGTGCCTTGCACTTCTCACCATC
ACTTGCTGATGCTGCTCCTGCAGCTGCTGTTGGCACCGCCCTCGGACGAA
GAAATATAAGAGCTGCGACCTACTTAGGGGTGCGTGTGGGCGTAGTGCTT
TTTACGTCCATAGTTGCTTACCTTCTGCCTGAATTTGAGCTGCTGGTGGC
ATTAGTGGGATCCATAGGCGCGGGCATGCTTGCATTTATAATGCCGGGAA
TTTTGGGGTGGGCCATGTATAAGGAGACGGCCACGAGGAAAGAGAAGGGG
AGGTATGGCTGTCTGATTGCGTTTGGGGTTGTTGGGGGGGTAATTGGAGC
GGGCCACGCGCTGCATGACTTGATTTATGGGCAATCGCAGTGCTAG

Synonyms

Publications