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Properties
Property Name | Value |
TranscriptId | 600405 |
Track | FilteredModels2 |
ProteinId | 600319 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_22 | supercontig | scaffold_22:31983..34628 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7870 ID=mRNA_7870|Name=jgi.p|Nanoce1779_2|600319|organism=Nannochloropsis oceanica|type=mRNA|length=2646bp TCCAAAGATCAAAAGCGGGTCTAATATAATGTTGACCGCCGCGACGAGGA AAGTTACCGGAAGAGGGGTCAAGGTGTCGCCAAACCCTCTGTAAGCCCCT TCACAAACCATGAGCGTCAGCACTGCAGGTGCGGCAAGGGCCCGCGCCCT GAGGTACGGGAGGCCGGTACGGGCGAGGAGGGAGGACGGCGGGGCGCCCA TCAAGGAGAGGGCGAATGCCGCCTGGGTGGAGAGGAAGAAGGCCACCAGG GAGCCCAGAGCAGAGGCAAGGACAAGGGCCTGGAGCACGACACTACGCAC CCGTTTCTTGTCCCCCACGGCCAGGGAGGAGGAGACGAGGGAGGTTGTAC TCTGGCTGAAGGCCCGAAAAGCGTTGAAGGACAGGTGGAAGATCGAGGTG CACGGACCGAGGGACGCCAAGGCAATGGTGCCCACTCTGGCGACATAGGC CGTGTCGCACAAAGATAGAAAAGGATCGACGAGGAGGGTGAGGAGGGCGG GGAGGGAAATGCGCAAAATTTCCCCGTCGTGTTCGGACATGCCGGTTTGA AGGCGCGCGAGAAAGGATGGCGAGGAGGAGGAAGAGTTGCTGCCATGGAG GCGAGCTAGGAGGCGACGGAAGAGGAGGAGACGATGGCGGGAGAAAGAAG AAGAGGTAGAGTTAAGGGGATTGGACCCCGGCTGGTGCTCAACGCCTCCG GCACGTGTGAGGAGGCGGAAAAGTAATAATGACGTCAGTACCCTCTTTTT ACGGCCCTCTTTCTCCTCCGGCGTAGGATAGGACGGGGGTGATGATGGAC CGTTGTGATCGTCGTCGTTGTCGTAATTGATCATCAGGTTGTCGCTGCCG CTGTGCCAATGGAGCAGAGAGGGCAGTGACGTGTGGAATGGCCTAACTGA TCGGGGTTTGGGTGACAGGTAGGGGAGGCAGCGGAAATGGTAATGGGGCA ACGATTGGGGTAGAAAGGGGGAGGTGGGACACGGCAGTCGAAATGCATCA CTGCCAGAATTCAGGAGGAGGAGGAGCAGCTGCAGCATGACGAAGGCAGG CACGCCTGAGGTAAGTGGGGAGGGGAGGGTGAGGGAGGCGAGCGGTTAAG GAACGGCACATTTCCTCCTTTTCTCTCTGGTAAGACTTCGAAATTTGTCG GCTCTACAGGGATCATACCTTGTCGAAAGCGACCGCGACGCCGGTGGTGG TAATACAGCAGTATGGTGAGAAGACTGGAAGCACAGGGGAAGCGGCCGGA ATATGGGATATATTGTTGGTGGGCTGAAGGGATGGGCTTTTATGCTGGCC TGGCCGAGAAGGGTGGGAAAGCAGATAGGAAAGATAGAGACAAGAGCGAC GTGAGCAAGGGTGGCAAGCAAACTATAAAAGCGGCATATTTGCGTTAGGA GAATTGGGAAGAGATAGGGAAGAAGCAGCCAGTGACTGACACATGAGAAA CCTCCCCTGTACCCACCACCGCAAGCACAAACCTCCCCTGTACCCACCAA TTTACGCATGCAACAAATCAACAAAACAAGAAACACTTCCACGTAGATAA GGTCAGGGACTGTACATGTTGATTTGCTGTCATTTCGGCTGTTCTACAGA CTTTTGTACTTTTTCTTTATCCTACAAGCCAGTGTCACATTGCTCGAGCC GCCGGCTTCCTGTCCTCCCTCTCTTTTTACCCTCCCTGCTATACGAGCCA GTTCTTTGACCACATGTACCTTAAGCTTCTCGTCCACTCTCCTCTTTTCC CCCCTCCTTCGCGCTTTCCATTTTCATTTCGTCCATTGGTCAAGCCGCAC GCTCAACGTAATCTCTTGCCCTCCTCCCTTCCATTTCTCCTCCTCCTCCT CCTTCTGATCCATCGCCACCACTTCCGTCCATCCCTCCACCCATCCTCCC ATTGCTTGCCCTCCTCCTCCCATATCTTCCACCCCTTCCCCGACGGATGC TGTGTGTGAGAGTAAAAGCTGGCGCACCAACTCCTGTGCGCTCCTCCTCC TTTTCCCTCCCTCCTCCTCATTCCACCACGCAGACTCCGGCAACAACAAT ACGGCATTCGCATGAGGTCCCAAGAAAATCGCTCGCCGACTTAGAGAGAG CGACCACAACCTTTTCTCCCCCGTTTCCTCCGTCCCTCCCTCCTCCTCCT CCTCCTCTTTATCCTCCACCTCTATCACGTCCATCATCGCCCCTGCTTCC TCTATTTCCCCTCCCCTTCCTCTCCCCCTCCCTTGCCCTAAGCGAGGCGT ATATGCAAGCACATCACACGGCAAAGAATGCAATAATCGGCGTTCCTCCT CTCTCGACAAACCTCCCCACACACCTCCCCTCTCTTTCTCCCCATCCTCC TCCTGCGCCAACCCCCTCAGAACTCTCTCAAGCTCCGAACTTCTTCCTTC TTGTCCTCGTTGTCTTCCCTCTCGTCCCACAGCAGGGTCAGAGGGAACAA AGGGGAGATACGAGACAAAAGGAGAACGGCCGGAAGCACCAGCAGCAGTA GTAAGAAGGCGATTTGCCTCTGTCCGAGCGAGAAGGCGATGAATCGAAGG GTAGGGAGGGGGGGAAGGAGGGAGGGAAGACGTGCTGGTTGAAGAAGAAG ATATGAGAAGAAAGTGCTGCCAAAGCTGGGAGAGGGATCTGTCTAC back to topprotein sequence of jgi.p|Nanoce1779_2|600319 >mRNA_7870-protein ID=mRNA_7870-protein|Name=jgi.p|Nanoce1779_2|600319|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp MLCVRVKAGAPTPVRSSSFSLPPPHSTTQTPATTIRHSHEVPRKSLADLE RATTTFSPPFPPSLPPPPPPLYPPPLSRPSSPLLPLFPLPFLSPSLALSE AYMQAHHTAKNAIIGVPPLSTNLPTHLPSLSPHPPPAPTPSELSQAPNFF LLVLVVFPLVPQQGQREQRGDTRQKENGRKHQQQ* back to topmRNA from alignment at scaffold_22:31983..34628+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7870 ID=mRNA_7870|Name=jgi.p|Nanoce1779_2|600319|organism=Nannochloropsis oceanica|type=mRNA|length=2646bp|location=Sequence derived from alignment at scaffold_22:31983..34628+ (Nannochloropsis oceanica) TCCAAAGATCAAAAGCGGGTCTAATATAATGTTGACCGCCGCGACGAGGA
AAGTTACCGGAAGAGGGGTCAAGGTGTCGCCAAACCCTCTGTAAGCCCCT
TCACAAACCATGAGCGTCAGCACTGCAGGTGCGGCAAGGGCCCGCGCCCT
GAGGTACGGGAGGCCGGTACGGGCGAGGAGGGAGGACGGCGGGGCGCCCA
TCAAGGAGAGGGCGAATGCCGCCTGGGTGGAGAGGAAGAAGGCCACCAGG
GAGCCCAGAGCAGAGGCAAGGACAAGGGCCTGGAGCACGACACTACGCAC
CCGTTTCTTGTCCCCCACGGCCAGGGAGGAGGAGACGAGGGAGGTTGTAC
TCTGGCTGAAGGCCCGAAAAGCGTTGAAGGACAGGTGGAAGATCGAGGTG
CACGGACCGAGGGACGCCAAGGCAATGGTGCCCACTCTGGCGACATAGGC
CGTGTCGCACAAAGATAGAAAAGGATCGACGAGGAGGGTGAGGAGGGCGG
GGAGGGAAATGCGCAAAATTTCCCCGTCGTGTTCGGACATGCCGGTTTGA
AGGCGCGCGAGAAAGGATGGCGAGGAGGAGGAAGAGTTGCTGCCATGGAG
GCGAGCTAGGAGGCGACGGAAGAGGAGGAGACGATGGCGGGAGAAAGAAG
AAGAGGTAGAGTTAAGGGGATTGGACCCCGGCTGGTGCTCAACGCCTCCG
GCACGTGTGAGGAGGCGGAAAAGTAATAATGACGTCAGTACCCTCTTTTT
ACGGCCCTCTTTCTCCTCCGGCGTAGGATAGGACGGGGGTGATGATGGAC
CGTTGTGATCGTCGTCGTTGTCGTAATTGATCATCAGGTTGTCGCTGCCG
CTGTGCCAATGGAGCAGAGAGGGCAGTGACGTGTGGAATGGCCTAACTGA
TCGGGGTTTGGGTGACAGGTAGGGGAGGCAGCGGAAATGGTAATGGGGCA
ACGATTGGGGTAGAAAGGGGGAGGTGGGACACGGCAGTCGAAATGCATCA
CTGCCAGAATTCAGGAGGAGGAGGAGCAGCTGCAGCATGACGAAGGCAGG
CACGCCTGAGGTAAGTGGGGAGGGGAGGGTGAGGGAGGCGAGCGGTTAAG
GAACGGCACATTTCCTCCTTTTCTCTCTGGTAAGACTTCGAAATTTGTCG
GCTCTACAGGGATCATACCTTGTCGAAAGCGACCGCGACGCCGGTGGTGG
TAATACAGCAGTATGGTGAGAAGACTGGAAGCACAGGGGAAGCGGCCGGA
ATATGGGATATATTGTTGGTGGGCTGAAGGGATGGGCTTTTATGCTGGCC
TGGCCGAGAAGGGTGGGAAAGCAGATAGGAAAGATAGAGACAAGAGCGAC
GTGAGCAAGGGTGGCAAGCAAACTATAAAAGCGGCATATTTGCGTTAGGA
GAATTGGGAAGAGATAGGGAAGAAGCAGCCAGTGACTGACACATGAGAAA
CCTCCCCTGTACCCACCACCGCAAGCACAAACCTCCCCTGTACCCACCAA
TTTACGCATGCAACAAATCAACAAAACAAGAAACACTTCCACGTAGATAA
GGTCAGGGACTGTACATGTTGATTTGCTGTCATTTCGGCTGTTCTACAGA
CTTTTGTACTTTTTCTTTATCCTACAAGCCAGTGTCACATTGCTCGAGCC
GCCGGCTTCCTGTCCTCCCTCTCTTTTTACCCTCCCTGCTATACGAGCCA
GTTCTTTGACCACATGTACCTTAAGCTTCTCGTCCACTCTCCTCTTTTCC
CCCCTCCTTCGCGCTTTCCATTTTCATTTCGTCCATTGGTCAAGCCGCAC
GCTCAACGTAATCTCTTGCCCTCCTCCCTTCCATTTCTCCTCCTCCTCCT
CCTTCTGATCCATCGCCACCACTTCCGTCCATCCCTCCACCCATCCTCCC
ATTGCTTGCCCTCCTCCTCCCATATCTTCCACCCCTTCCCCGACGGATGC
TGTGTGTGAGAGTAAAAGCTGGCGCACCAACTCCTGTGCGCTCCTCCTCC
TTTTCCCTCCCTCCTCCTCATTCCACCACGCAGACTCCGGCAACAACAAT
ACGGCATTCGCATGAGGTCCCAAGAAAATCGCTCGCCGACTTAGAGAGAG
CGACCACAACCTTTTCTCCCCCGTTTCCTCCGTCCCTCCCTCCTCCTCCT
CCTCCTCTTTATCCTCCACCTCTATCACGTCCATCATCGCCCCTGCTTCC
TCTATTTCCCCTCCCCTTCCTCTCCCCCTCCCTTGCCCTAAGCGAGGCGT
ATATGCAAGCACATCACACGGCAAAGAATGCAATAATCGGCGTTCCTCCT
CTCTCGACAAACCTCCCCACACACCTCCCCTCTCTTTCTCCCCATCCTCC
TCCTGCGCCAACCCCCTCAGAACTCTCTCAAGCTCCGAACTTCTTCCTTC
TTGTCCTCGTTGTCTTCCCTCTCGTCCCACAGCAGGGTCAGAGGGAACAA
AGGGGAGATACGAGACAAAAGGAGAACGGCCGGAAGCACCAGCAGCAGTA
GTAAGAAGGCGATTTGCCTCTGTCCGAGCGAGAAGGCGATGAATCGAAGG
GTAGGGAGGGGGGGAAGGAGGGAGGGAAGACGTGCTGGTTGAAGAAGAAG
ATATGAGAAGAAAGTGCTGCCAAAGCTGGGAGAGGGATCTGTCTAC back to topCoding sequence (CDS) from alignment at scaffold_22:31983..34628+ >mRNA_7870 ID=mRNA_7870|Name=jgi.p|Nanoce1779_2|600319|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_22:31983..34628+ (Nannochloropsis oceanica) ATGCTGTGTGTGAGAGTAAAAGCTGGCGCACCAACTCCTGTGCGCTCCTC CTCCTTTTCCCTCCCTCCTCCTCATTCCACCACGCAGACTCCGGCAACAA CAATACGGCATTCGCATGAGGTCCCAAGAAAATCGCTCGCCGACTTAGAG AGAGCGACCACAACCTTTTCTCCCCCGTTTCCTCCGTCCCTCCCTCCTCC TCCTCCTCCTCTTTATCCTCCACCTCTATCACGTCCATCATCGCCCCTGC TTCCTCTATTTCCCCTCCCCTTCCTCTCCCCCTCCCTTGCCCTAAGCGAG GCGTATATGCAAGCACATCACACGGCAAAGAATGCAATAATCGGCGTTCC TCCTCTCTCGACAAACCTCCCCACACACCTCCCCTCTCTTTCTCCCCATC CTCCTCCTGCGCCAACCCCCTCAGAACTCTCTCAAGCTCCGAACTTCTTC CTTCTTGTCCTCGTTGTCTTCCCTCTCGTCCCACAGCAGGGTCAGAGGGA ACAAAGGGGAGATACGAGACAAAAGGAGAACGGCCGGAAGCACCAGCAGC AGTAG back to top
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