jgi.p|Nanoce1779_2|201269, mRNA_8074 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|201269
Unique NamemRNA_8074
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1780
Alignment locationscaffold_25:90774..92655 -

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Properties
Property NameValue
TranscriptId201355
TrackFilteredModels2
ProteinId201269
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:90774..92655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|201269gene_8074Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|201269mRNA_8074-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8074CDS_8074Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8074 ID=mRNA_8074|Name=jgi.p|Nanoce1779_2|201269|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp
CCTGCCCTGGCCCTTGCTTATCCTCTTCCCTCCTTAACTTTTATATGAGC
AGGCTACAGGAGGACGACGACGCCGGCACGTGGGACTCAAGAAGCCGCCA
ACATTCCGTTCTAGAGCTTGCATGCGCGTCTTCTCCTACCTGTCCACGTC
CACCACCCGCGGTTCCTGGGCCCAGTGCCTTGAGCGAGTGGCTTTTTTGT
TATTGCTTCGGGACATCAGCGCCGGCTCTCTCCCCAACGGCGGCTGGGTG
CGTTCTAGCATGTCCACATGCAACGCTTCTGCCTCCTTTTCATCCTTGTC
CGCCGCCTCGTCCGCCACATCCACCCCAAATTCGACTTCTTACGCCCACC
ACACCTACCGCCCCCGCCGAGATCTCTACACTCCTCCACCCGCCCATCTG
AGCCTTAAGCAAGTCGTCATCATCGCACGCCACGGCGACCGCGCACCCAT
CGCTCGGAACGTCGGCCAAGCCGTCCAAGACTCGCCCTCCAGTCAGGAAT
TATGGCAATCCAAACTCCCCTCCCTCCAAGAATTGCAGCAGTGGTCAGCA
ACTTACCCCCTCTCCGACCCGTCGCTCAAACCCGTCGATCAGCACGAGCA
CCCTTACGCGCAACTCACCAGGAGGGGGGCCGAGGAGTTGAGGGCCTTAG
GGAAGCATCTCAGGGAGCGTTATGTATGTCACTTGAAGTGGTTGCCCGCC
CAACTTCACTCAGCCGCCACCGCTACTACCGGCGGTGAGAGCGAGAACCT
AGACGTTTTTACTTCCTCTGGCTCTTCCTCCTCTGACTTTGCAACCAAGC
CTCGTCTAATTTACGCTCGAGCCACCAACATCCGCCGCACGCAACAGTCC
TGTCAAAATCTCCTGTTGGGTCTCTACCCACCTCCTTCCTCGCCCAGCTC
CGTCCCCCCGTTGACAATTGACGTGCGTCCCACCCACCTAGAGACGTTGT
ACCCCAACGCCGACCGCTCCTGCTGCCGACAAGGAGAGATCATCGCCGAG
CTGCGGCAGCAACACTACCGCCTCCCTCCCTCCCTCGTCCGCAGCATCAC
CGAGGAAGCTCATGTTCGTCTCGGTCTGACTCCTTCCTTGACCTCCGCTA
CCCCTGCGCTGGTTCCATGGAATCAGGTGCGAGAAGTGTGGACATGCCAT
GCCGTGCATGGATTGCCATTTCCCTCTTCTGTGGAGGGAGGAGGGGTGGA
AGGGGGGGAAGAGGAATGGTTTGAAAGGGTCGAGCAATTTACCTGTCGGA
TGTGGGGGTCTTGGTTTCGGGAGGAGGAGATGACGAGACTGGCCATTGGC
CCCTTCCTGAAAGAGGTCCTGGAGGGGATAGAGGGGAAGGCGAGTGGGAG
GAAGGGTCAGAGGGAAGGTATGGGGGAGGGCGGGAAGGTGGAACATGTGG
TGGTGTACGCGGGGCATGACTCGTCCATCGTGCCTGTGTTGGCTGCACTT
GGGATCTGGGAGGATGTCTGGCCCCCCTATGCTGCAAACATTGTCTTGGA
GCTTGCAGAGAAGGAGGGAGGGGAGGTGTGGTATCCCTTAGAGGTGTTTT
CGGAGAAGATAAAGCGGTTTCTGCCGACGGATTATGAGAAGGAGTGTCGG
TGTCGAAATGACGAAGAGGGGAAGGATGGCGGGGAGGAGGACGAGGTCGC
GTCGTCGATCAAGTGAGCGAGGAGGGAGATTGAGATGTCTGGATCTAAAC
GTTTGAGGAAAAGGTGCCCAACGGATAAACCGAGAATGAACGCGGCTATA
AATAGCCAGTATTGTAAGCATCAGGAGGTC
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protein sequence of jgi.p|Nanoce1779_2|201269

>mRNA_8074-protein ID=mRNA_8074-protein|Name=jgi.p|Nanoce1779_2|201269|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MRVFSYLSTSTTRGSWAQCLERVAFLLLLRDISAGSLPNGGWVRSSMSTC
NASASFSSLSAASSATSTPNSTSYAHHTYRPRRDLYTPPPAHLSLKQVVI
IARHGDRAPIARNVGQAVQDSPSSQELWQSKLPSLQELQQWSATYPLSDP
SLKPVDQHEHPYAQLTRRGAEELRALGKHLRERYVCHLKWLPAQLHSAAT
ATTGGESENLDVFTSSGSSSSDFATKPRLIYARATNIRRTQQSCQNLLLG
LYPPPSSPSSVPPLTIDVRPTHLETLYPNADRSCCRQGEIIAELRQQHYR
LPPSLVRSITEEAHVRLGLTPSLTSATPALVPWNQVREVWTCHAVHGLPF
PSSVEGGGVEGGEEEWFERVEQFTCRMWGSWFREEEMTRLAIGPFLKEVL
EGIEGKASGRKGQREGMGEGGKVEHVVVYAGHDSSIVPVLAALGIWEDVW
PPYAANIVLELAEKEGGEVWYPLEVFSEKIKRFLPTDYEKECRCRNDEEG
KDGGEEDEVASSIK*
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mRNA from alignment at scaffold_25:90774..92655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8074 ID=mRNA_8074|Name=jgi.p|Nanoce1779_2|201269|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp|location=Sequence derived from alignment at scaffold_25:90774..92655- (Nannochloropsis oceanica)
CCTGCCCTGGCCCTTGCTTATCCTCTTCCCTCCTTAACTTTTATATGAGC
AGGCTACAGGAGGACGACGACGCCGGCACGTGGGACTCAAGAAGCCGCCA
ACATTCCGTTCTAGAGCTTGCATGCGCGTCTTCTCCTACCTGTCCACGTC
CACCACCCGCGGTTCCTGGGCCCAGTGCCTTGAGCGAGTGGCTTTTTTGT
TATTGCTTCGGGACATCAGCGCCGGCTCTCTCCCCAACGGCGGCTGGGTG
CGTTCTAGCATGTCCACATGCAACGCTTCTGCCTCCTTTTCATCCTTGTC
CGCCGCCTCGTCCGCCACATCCACCCCAAATTCGACTTCTTACGCCCACC
ACACCTACCGCCCCCGCCGAGATCTCTACACTCCTCCACCCGCCCATCTG
AGCCTTAAGCAAGTCGTCATCATCGCACGCCACGGCGACCGCGCACCCAT
CGCTCGGAACGTCGGCCAAGCCGTCCAAGACTCGCCCTCCAGTCAGGAAT
TATGGCAATCCAAACTCCCCTCCCTCCAAGAATTGCAGCAGTGGTCAGCA
ACTTACCCCCTCTCCGACCCGTCGCTCAAACCCGTCGATCAGCACGAGCA
CCCTTACGCGCAACTCACCAGGAGGGGGGCCGAGGAGTTGAGGGCCTTAG
GGAAGCATCTCAGGGAGCGTTATGTATGTCACTTGAAGTGGTTGCCCGCC
CAACTTCACTCAGCCGCCACCGCTACTACCGGCGGTGAGAGCGAGAACCT
AGACGTTTTTACTTCCTCTGGCTCTTCCTCCTCTGACTTTGCAACCAAGC
CTCGTCTAATTTACGCTCGAGCCACCAACATCCGCCGCACGCAACAGTCC
TGTCAAAATCTCCTGTTGGGTCTCTACCCACCTCCTTCCTCGCCCAGCTC
CGTCCCCCCGTTGACAATTGACGTGCGTCCCACCCACCTAGAGACGTTGT
ACCCCAACGCCGACCGCTCCTGCTGCCGACAAGGAGAGATCATCGCCGAG
CTGCGGCAGCAACACTACCGCCTCCCTCCCTCCCTCGTCCGCAGCATCAC
CGAGGAAGCTCATGTTCGTCTCGGTCTGACTCCTTCCTTGACCTCCGCTA
CCCCTGCGCTGGTTCCATGGAATCAGGTGCGAGAAGTGTGGACATGCCAT
GCCGTGCATGGATTGCCATTTCCCTCTTCTGTGGAGGGAGGAGGGGTGGA
AGGGGGGGAAGAGGAATGGTTTGAAAGGGTCGAGCAATTTACCTGTCGGA
TGTGGGGGTCTTGGTTTCGGGAGGAGGAGATGACGAGACTGGCCATTGGC
CCCTTCCTGAAAGAGGTCCTGGAGGGGATAGAGGGGAAGGCGAGTGGGAG
GAAGGGTCAGAGGGAAGGTATGGGGGAGGGCGGGAAGGTGGAACATGTGG
TGGTGTACGCGGGGCATGACTCGTCCATCGTGCCTGTGTTGGCTGCACTT
GGGATCTGGGAGGATGTCTGGCCCCCCTATGCTGCAAACATTGTCTTGGA
GCTTGCAGAGAAGGAGGGAGGGAGGGAAGGAGGAAGGGTGGGAGAGCATT
TTGTGCGGATATTGTATAATGATGAGGAGAGGGTGTTGTTTGGAGAAGAA
GGGGAGGGATGGAGGGAGGGAGGGGAGGTGTGGTATCCCTTAGAGGTGTT
TTCGGAGAAGATAAAGCGGTTTCTGCCGACGGATTATGAGAAGGAGTGTC
GGTGTCGAAATGACGAAGAGGGGAAGGATGGCGGGGAGGAGGACGAGGTC
GCGTCGTCGATCAAGTGAGCGAGGAGGGAGATTGAGATGTCTGGATCTAA
ACGTTTGAGGAAAAGGTGCCCAACGGATAAACCGAGAATGAACGCGGCTA
TAAATAGCCAGTATTGTAAGCATCAGGAGGTC
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Coding sequence (CDS) from alignment at scaffold_25:90774..92655-

>mRNA_8074 ID=mRNA_8074|Name=jgi.p|Nanoce1779_2|201269|organism=Nannochloropsis oceanica|type=CDS|length=3090bp|location=Sequence derived from alignment at scaffold_25:90774..92655- (Nannochloropsis oceanica)
GGAGGGAGGGGAGGTGTGGTATCCCTTAGAGGTGTTTTCGGAGAAGATAA
AGCGGTTTCTGCCGACGGATTATGAGAAGGAGTGTCGGTGTCGAAATGAC
GAAGAGGGGAAGGATGGCGGGGAGGAGGACGAGGTCGCGTCGTCGATCAA
GTGAATGCGCGTCTTCTCCTACCTGTCCACGTCCACCACCCGCGGTTCCT
GGGCCCAGTGCCTTGAGCGAGTGGCTTTTTTGTTATTGCTTCGGGACATC
AGCGCCGGCTCTCTCCCCAACGGCGGCTGGGTGCGTTCTAGCATGTCCAC
ATGCAACGCTTCTGCCTCCTTTTCATCCTTGTCCGCCGCCTCGTCCGCCA
CATCCACCCCAAATTCGACTTCTTACGCCCACCACACCTACCGCCCCCGC
CGAGATCTCTACACTCCTCCACCCGCCCATCTGAGCCTTAAGCAAGTCGT
CATCATCGCACGCCACGGCGACCGCGCACCCATCGCTCGGAACGTCGGCC
AAGCCGTCCAAGACTCGCCCTCCAGTCAGGAATTATGGCAATCCAAACTC
CCCTCCCTCCAAGAATTGCAGCAGTGGTCAGCAACTTACCCCCTCTCCGA
CCCGTCGCTCAAACCCGTCGATCAGCACGAGCACCCTTACGCGCAACTCA
CCAGGAGGGGGGCCGAGGAGTTGAGGGCCTTAGGGAAGCATCTCAGGGAG
CGTTATGTATGTCACTTGAAGTGGTTGCCCGCCCAACTTCACTCAGCCGC
CACCGCTACTACCGGCGGTGAGAGCGAGAACCTAGACGTTTTTACTTCCT
CTGGCTCTTCCTCCTCTGACTTTGCAACCAAGCCTCGTCTAATTTACGCT
CGAGCCACCAACATCCGCCGCACGCAACAGTCCTGTCAAAATCTCCTGTT
GGGTCTCTACCCACCTCCTTCCTCGCCCAGCTCCGTCCCCCCGTTGACAA
TTGACGTGCGTCCCACCCACCTAGAGACGTTGTACCCCAACGCCGACCGC
TCCTGCTGCCGACAAGGAGAGATCATCGCCGAGCTGCGGCAGCAACACTA
CCGCCTCCCTCCCTCCCTCGTCCGCAGCATCACCGAGGAAGCTCATGTTC
GTCTCGGTCTGACTCCTTCCTTGACCTCCGCTACCCCTGCGCTGGTTCCA
TGGAATCAGGTGCGAGAAGTGTGGACATGCCATGCCGTGCATGGATTGCC
ATTTCCCTCTTCTGTGGAGGGAGGAGGGGTGGAAGGGGGGGAAGAGGAAT
GGTTTGAAAGGGTCGAGCAATTTACCTGTCGGATGTGGGGGTCTTGGTTT
CGGGAGGAGGAGATGACGAGACTGGCCATTGGCCCCTTCCTGAAAGAGGT
CCTGGAGGGGATAGAGGGGAAGGCGAGTGGGAGGAAGGGTCAGAGGGAAG
GTATGGGGGAGGGCGGGAAGGTGGAACATGTGGTGGTGTACGCGGGGCAT
GACTCGTCCATCGTGCCTGTGTTGGCTGCACTTGGGATCTGGGAGGATGT
CTGGCCCCCCTATGCTGCAAACATTGTCTTGGAGCTTGCAGAGAAGGAGG
GAGGGGAGGTGTGGTATCCCTTAGAGGTGTTTTCGGAGAAGATAAAGCGG
TTTCTGCCGACGGATTATGAGAAGGAGTGTCGGTGTCGAAATGACGAAGA
GGGGAAGGATGGCGGGGAGGAGGACGAGGTCGCGTCGTCGATCAAGTGAA
TGCGCGTCTTCTCCTACCTGTCCACGTCCACCACCCGCGGTTCCTGGGCC
CAGTGCCTTGAGCGAGTGGCTTTTTTGTTATTGCTTCGGGACATCAGCGC
CGGCTCTCTCCCCAACGGCGGCTGGGTGCGTTCTAGCATGTCCACATGCA
ACGCTTCTGCCTCCTTTTCATCCTTGTCCGCCGCCTCGTCCGCCACATCC
ACCCCAAATTCGACTTCTTACGCCCACCACACCTACCGCCCCCGCCGAGA
TCTCTACACTCCTCCACCCGCCCATCTGAGCCTTAAGCAAGTCGTCATCA
TCGCACGCCACGGCGACCGCGCACCCATCGCTCGGAACGTCGGCCAAGCC
GTCCAAGACTCGCCCTCCAGTCAGGAATTATGGCAATCCAAACTCCCCTC
CCTCCAAGAATTGCAGCAGTGGTCAGCAACTTACCCCCTCTCCGACCCGT
CGCTCAAACCCGTCGATCAGCACGAGCACCCTTACGCGCAACTCACCAGG
AGGGGGGCCGAGGAGTTGAGGGCCTTAGGGAAGCATCTCAGGGAGCGTTA
TGTATGTCACTTGAAGTGGTTGCCCGCCCAACTTCACTCAGCCGCCACCG
CTACTACCGGCGGTGAGAGCGAGAACCTAGACGTTTTTACTTCCTCTGGC
TCTTCCTCCTCTGACTTTGCAACCAAGCCTCGTCTAATTTACGCTCGAGC
CACCAACATCCGCCGCACGCAACAGTCCTGTCAAAATCTCCTGTTGGGTC
TCTACCCACCTCCTTCCTCGCCCAGCTCCGTCCCCCCGTTGACAATTGAC
GTGCGTCCCACCCACCTAGAGACGTTGTACCCCAACGCCGACCGCTCCTG
CTGCCGACAAGGAGAGATCATCGCCGAGCTGCGGCAGCAACACTACCGCC
TCCCTCCCTCCCTCGTCCGCAGCATCACCGAGGAAGCTCATGTTCGTCTC
GGTCTGACTCCTTCCTTGACCTCCGCTACCCCTGCGCTGGTTCCATGGAA
TCAGGTGCGAGAAGTGTGGACATGCCATGCCGTGCATGGATTGCCATTTC
CCTCTTCTGTGGAGGGAGGAGGGGTGGAAGGGGGGGAAGAGGAATGGTTT
GAAAGGGTCGAGCAATTTACCTGTCGGATGTGGGGGTCTTGGTTTCGGGA
GGAGGAGATGACGAGACTGGCCATTGGCCCCTTCCTGAAAGAGGTCCTGG
AGGGGATAGAGGGGAAGGCGAGTGGGAGGAAGGGTCAGAGGGAAGGTATG
GGGGAGGGCGGGAAGGTGGAACATGTGGTGGTGTACGCGGGGCATGACTC
GTCCATCGTGCCTGTGTTGGCTGCACTTGGGATCTGGGAGGATGTCTGGC
CCCCCTATGCTGCAAACATTGTCTTGGAGCTTGCAGAGAA
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Synonyms
Publications