jgi.p|Nanoce1779_2|605550, mRNA_9805 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605550
Unique NamemRNA_9805
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1291
Alignment locationscaffold_32:132544..133855 -

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Properties
Property NameValue
TranscriptId605636
TrackFilteredModels2
ProteinId605550
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:132544..133855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605550gene_9805Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605550mRNA_9805-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9805CDS_9805Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9805 ID=mRNA_9805|Name=jgi.p|Nanoce1779_2|605550|organism=Nannochloropsis oceanica|type=mRNA|length=1291bp
CAGCACAAAAAGGATAAACGAGGATTTAATCGGTTTCTCCTCTGCCTTGA
ATGCGGTCTCCATTTTAGAAGAATCTTTTTCCAACGAGTGAAGATGCATC
CTGAAATCTCAACTCACAAAGGAAAATTGGAGGTGATTAAGATAGACAGG
CTCTTCGAAAGCTGCACTTTTTTGTACACTAGAGTTAAAAAACAATGGGC
CACACTTTGCCTTATGTCTTTCTGCATTATCGCTGCGGAGTGGATTTCAA
GTTCTGGCGGCAGTAAGCCATTCATGAGAAAGCCTAGTTTTGCTATGAGC
GATGTGGCTCTCGATCCGGCCGATAAATCATCCAATGCGAATTCGACCTA
CAACAAGAGTCAAGGGTCCCAAGATTATTACCTGGAAACTATTTTTGCAC
ACATTGGGGAGACGAATAGGTATTTTGTCGAATTCGGTTTCAATGAGAAG
TCATACACAAGCGGCGGCTCGGGTGCTAATACCTGGGACCTCCACGATAA
AGGGTGGCGAGGACTGCTGTTGGATGCCGATCATGAAAATCCGGCAATTA
ACCTTCGGAAGCACTTCCTATACAGCAACAACATCGCCAGTATATTTGAA
ACCTACCTCGTACCAAAAGAGCCGGACTACTTATCGTGTGACATGGACAG
CCATGATCTCTTTGTTTGGAAAGCAATCCTAGAAGCGGGTTATCGACCCC
GGCTTATGTCCACGGAATTCAATTCAAATTACCCACTCAACCTGACGATT
ACAGAAATTGATCCCTCTTTGAAGGAACACGATGCCGTATCTGAATTTCG
CTTCAAACAATGCGCCTGGGGTGCCTCTGCAGGCGCGTTAAAACTCATTG
CTGATCAGTACGGATATGTTCTTGTGGGACACGTTCGCAATCTGGACCTT
TTCTGGTTACGAAAGGATCTACTTCCCAACTCCTGGATAATTCCAGAATT
TTCGTGGTTTTTTGACAACGAATTGGGAATACTCCATCACAATGCGCAGC
AGTCCGCGGATATTTTCAACTACCTCATCGACTACGCTGAGTATGCCCGA
AGCGGAAATTTGCAGGCCGCTATGGCCTCAGCTACGAGTGCTATTAAGAA
CGCCCGCTTGGACTGCTTTAGTGGCATCGTCGGATCGTAAGTCGGCCGTC
TCCATGTATAAATGAGCCCCTACTACTACTGTCTGGCACTACTCTGTCAA
GTTCCTCCGTCTTTATCTTTCTGAGTATTTGACATGAACAAATGTTGGCT
TTCTATGCCCCCTTTCTGGGATGTATTCGATCCGATGGCGA
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protein sequence of jgi.p|Nanoce1779_2|605550

>mRNA_9805-protein ID=mRNA_9805-protein|Name=jgi.p|Nanoce1779_2|605550|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MHPEISTHKGKLEVIKIDRLFESCTFLYTRVKKQWATLCLMSFCIIAAEW
ISSSGGSKPFMRKPSFAMSDVALDPADKSSNANSTYNKSQGSQDYYLETI
FAHIGETNRYFVEFGFNEKSYTSGGSGANTWDLHDKGWRGLLLDADHENP
AINLRKHFLYSNNIASIFETYLVPKEPDYLSCDMDSHDLFVWKAILEAGY
RPRLMSTEFNSNYPLNLTITEIDPSLKEHDAVSEFRFKQCAWGASAGALK
LIADQYGYVLVGHVRNLDLFWLRKDLLPNSWIIPEFSWFFDNELGILHHN
AQQSADIFNYLIDYAEYARSGNLQAAMASATSAIKNARLDCFSGIVGS*
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mRNA from alignment at scaffold_32:132544..133855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9805 ID=mRNA_9805|Name=jgi.p|Nanoce1779_2|605550|organism=Nannochloropsis oceanica|type=mRNA|length=1312bp|location=Sequence derived from alignment at scaffold_32:132544..133855- (Nannochloropsis oceanica)
CAGCACAAAAAGGATAAACGAGGATTTAATCGGTTTCTCCTCTGCCTTGA
ATGCGGTCTCCATTTTAGAAGAATCTTTTTCCAACGAGTGAAGATGCATC
CTGAAATCTCAACTCACAAAGGAAAATTGGAGGTGATTAAGATAGACAGG
CTCTTCGAAAGCTGCACTTTTTTGTACACTAGAGTTAAAAAACAATGGGC
CACACTTTGCCTTATGTCTTTCTGCATTATCGCTGCGGAGTGGATTTCAA
GTTCTGGCGGCAGTAAGCCATTCATGAGAAAGCCTAGTTTTGCTATGAGC
GATGTGGCTCTCGATCCGGCCGATAAGTGAATTATGAATCTCCACAGATC
ATCCAATGCGAATTCGACCTACAACAAGAGTCAAGGGTCCCAAGATTATT
ACCTGGAAACTATTTTTGCACACATTGGGGAGACGAATAGGTATTTTGTC
GAATTCGGTTTCAATGAGAAGTCATACACAAGCGGCGGCTCGGGTGCTAA
TACCTGGGACCTCCACGATAAAGGGTGGCGAGGACTGCTGTTGGATGCCG
ATCATGAAAATCCGGCAATTAACCTTCGGAAGCACTTCCTATACAGCAAC
AACATCGCCAGTATATTTGAAACCTACCTCGTACCAAAAGAGCCGGACTA
CTTATCGTGTGACATGGACAGCCATGATCTCTTTGTTTGGAAAGCAATCC
TAGAAGCGGGTTATCGACCCCGGCTTATGTCCACGGAATTCAATTCAAAT
TACCCACTCAACCTGACGATTACAGAAATTGATCCCTCTTTGAAGGAACA
CGATGCCGTATCTGAATTTCGCTTCAAACAATGCGCCTGGGGTGCCTCTG
CAGGCGCGTTAAAACTCATTGCTGATCAGTACGGATATGTTCTTGTGGGA
CACGTTCGCAATCTGGACCTTTTCTGGTTACGAAAGGATCTACTTCCCAA
CTCCTGGATAATTCCAGAATTTTCGTGGTTTTTTGACAACGAATTGGGAA
TACTCCATCACAATGCGCAGCAGTCCGCGGATATTTTCAACTACCTCATC
GACTACGCTGAGTATGCCCGAAGCGGAAATTTGCAGGCCGCTATGGCCTC
AGCTACGAGTGCTATTAAGAACGCCCGCTTGGACTGCTTTAGTGGCATCG
TCGGATCGTAAGTCGGCCGTCTCCATGTATAAATGAGCCCCTACTACTAC
TGTCTGGCACTACTCTGTCAAGTTCCTCCGTCTTTATCTTTCTGAGTATT
TGACATGAACAAATGTTGGCTTTCTATGCCCCCTTTCTGGGATGTATTCG
ATCCGATGGCGA
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Coding sequence (CDS) from alignment at scaffold_32:132544..133855-

>mRNA_9805 ID=mRNA_9805|Name=jgi.p|Nanoce1779_2|605550|organism=Nannochloropsis oceanica|type=CDS|length=2094bp|location=Sequence derived from alignment at scaffold_32:132544..133855- (Nannochloropsis oceanica)
ATCATCCAATGCGAATTCGACCTACAACAAGAGTCAAGGGTCCCAAGATT
ATTACCTGGAAACTATTTTTGCACACATTGGGGAGACGAATAGGTATTTT
GTCGAATTCGGTTTCAATGAGAAGTCATACACAAGCGGCGGCTCGGGTGC
TAATACCTGGGACCTCCACGATAAAGGGTGGCGAGGACTGCTGTTGGATG
CCGATCATGAAAATCCGGCAATTAACCTTCGGAAGCACTTCCTATACAGC
AACAACATCGCCAGTATATTTGAAACCTACCTCGTACCAAAAGAGCCGGA
CTACTTATCGTGTGACATGGACAGCCATGATCTCTTTGTTTGGAAAGCAA
TCCTAGAAGCGGGTTATCGACCCCGGCTTATGTCCACGGAATTCAATTCA
AATTACCCACTCAACCTGACGATTACAGAAATTGATCCCTCTTTGAAGGA
ACACGATGCCGTATCTGAATTTCGCTTCAAACAATGCGCCTGGGGTGCCT
CTGCAGGCGCGTTAAAACTCATTGCTGATCAGTACGGATATGTTCTTGTG
GGACACGTTCGCAATCTGGACCTTTTCTGGTTACGAAAGGATCTACTTCC
CAACTCCTGGATAATTCCAGAATTTTCGTGGTTTTTTGACAACGAATTGG
GAATACTCCATCACAATGCGCAGCAGTCCGCGGATATTTTCAACTACCTC
ATCGACTACGCTGAGTATGCCCGAAGCGGAAATTTGCAGGCCGCTATGGC
CTCAGCTACGAGTGCTATTAAGAACGCCCGCTTGGACTGCTTTAGTGGCA
TCGTCGGATCGTAAATGCATCCTGAAATCTCAACTCACAAAGGAAAATTG
GAGGTGATTAAGATAGACAGGCTCTTCGAAAGCTGCACTTTTTTGTACAC
TAGAGTTAAAAAACAATGGGCCACACTTTGCCTTATGTCTTTCTGCATTA
TCGCTGCGGAGTGGATTTCAAGTTCTGGCGGCAGTAAGCCATTCATGAGA
AAGCCTAGTTTTGCTATGAGCGATGTGGCTCTCGATCCGGCCGATAAATC
ATCCAATGCGAATTCGACCTACAACAAGAGTCAAGGGTCCCAAGATTATT
ACCTGGAAACTATTTTTGCACACATTGGGGAGACGAATAGGTATTTTGTC
GAATTCGGTTTCAATGAGAAGTCATACACAAGCGGCGGCTCGGGTGCTAA
TACCTGGGACCTCCACGATAAAGGGTGGCGAGGACTGCTGTTGGATGCCG
ATCATGAAAATCCGGCAATTAACCTTCGGAAGCACTTCCTATACAGCAAC
AACATCGCCAGTATATTTGAAACCTACCTCGTACCAAAAGAGCCGGACTA
CTTATCGTGTGACATGGACAGCCATGATCTCTTTGTTTGGAAAGCAATCC
TAGAAGCGGGTTATCGACCCCGGCTTATGTCCACGGAATTCAATTCAAAT
TACCCACTCAACCTGACGATTACAGAAATTGATCCCTCTTTGAAGGAACA
CGATGCCGTATCTGAATTTCGCTTCAAACAATGCGCCTGGGGTGCCTCTG
CAGGCGCGTTAAAACTCATTGCTGATCAGTACGGATATGTTCTTGTGGGA
CACGTTCGCAATCTGGACCTTTTCTGGTTACGAAAGGATCTACTTCCCAA
CTCCTGGATAATTCCAGAATTTTCGTGGTTTTTTGACAACGAATTGGGAA
TACTCCATCACAATGCGCAGCAGTCCGCGGATATTTTCAACTACCTCATC
GACTACGCTGAGTATGCCCGAAGCGGAAATTTGCAGGCCGCTATGGCCTC
AGCTACGAGTGCTATTAAGAACGCCCGCTTGGACTGCTTTAGTGGCATCG
TCGGATCGTAAATGCATCCTGAAATCTCAACTCACAAAGGAAAATTGGAG
GTGATTAAGATAGACAGGCTCTTCGAAAGCTGCACTTTTTTGTACACTAG
AGTTAAAAAACAATGGGCCACACTTTGCCTTATGTCTTTCTGCATTATCG
CTGCGGAGTGGATTTCAAGTTCTGGCGGCAGTAAGCCATTCATGAGAAAG
CCTAGTTTTGCTATGAGCGATGTGGCTCTCGATCCGGCCGATAA
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Synonyms
Publications