jgi.p|Nanoce1779_2|269404, mRNA_9298 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|269404
Unique NamemRNA_9298
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1739
Alignment locationscaffold_35:20899..22845 -

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Properties
Property NameValue
TranscriptId269490
TrackFilteredModels2
ProteinId269404
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:20899..22845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|269404gene_9298Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|269404mRNA_9298-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9298CDS_9298Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9298 ID=mRNA_9298|Name=jgi.p|Nanoce1779_2|269404|organism=Nannochloropsis oceanica|type=mRNA|length=1739bp
AGCAGCAGCAGCAGCTTCAGCAGCAGCAGCTTCAGCACCAGCAGCACCAG
CAGCACCAGCAGCTTCAGCAATTACAGCAGCAGCAGCAGCAACAACAGCA
GCAACAAGAGCAGCTGCAGCAGCAACAGCAGCCACCACCCAACAAGAGCT
GGCAAAAACGCACCGAGACACGCCTGTGGGAAGCTGAAGAACAAGTCCGT
ATTCTTCAACAAGAGAATCAACTGCTGTGGCGACAGGTCCAGAGCAACCA
TTCCTACTCTCGAGGTCTCCAGAAGGCCCAAATTAAACTTCTTAATATTA
TATCCGAGCATCTGATGCCGCAGCCTACAGCTGATTCTGCTGCTGCTCCA
GTTTCCGCTGATACTACTACTGCAGCTGCTGCTGCTACTGCTGCAGGGCT
TCCGCCTCAGGTTGCGATTTCAGTCGGGGGCGTGGAAGGAGTAGGGGGAG
GAGTAAAGGGGGAAGAGAAGATGCATGGAAGTGCTGGTGGTGTAGAGGGA
AGGGAAACGGCTAGCCTTTCCTCCTCCTCTTCCTCTACCCTCCCTACCGC
TATCAACGGCAGCAGCAGCAGCAGCGTCGTTGTGCGACAAGCTCTGCAGC
ACTTGCGTGGTGAACTACTGAACCTCTCCACCTCCTTCCCCACCTCTTCT
CCATCCTCTCCTTCCTCCTCCCCTCTCTCCCATGTCGCCGGCAGCGATGG
TAGTAGTGGCGCCTCCCCCTCCTTCCCTTCCTCCTTCCCCTCTGCCGGCT
TGAACGCCTCCGGCGCGCGAGAAACGGAGGCGAGCGAGGGTGGAGGAGAA
GGAGAAGGAGGAATACCCCTAAGTCGTACTTTGAGTATGACAGATCCCTT
GTCGTTCTGGCGGGGTCTCTCCAGGACTCACTCCTTTGGGTCTATGCCCT
CCTTTGGCCCTGGCGCCGTCCACTCCCTTGTTGACCCCAGCACGGCCTCC
CTCCCTCCCTCCCTCCCTCCCCCTCTCCTTCCCTTCCAATCCACCGCATC
GTCTTGCGAGGGGGCACCTTTTGCGATGGGCACGGCTGGCGACACCTCCT
CCCCTTCCCTGGCACCGGGAAAGGAGGAGGGAGGGAAGGAGGACGGGCTC
GCCCCTGGAATAGGTGTGGGGATGGGGGTCCCTCCTGCTAGCTTCGGACG
ACTCAACAGCTTGACCCAGCAGCCGTCGTTGGAGATGCTTGCGGGCAAGG
AGGAGGGAGGGAAGGAGGGAGTGAGGGCGAGGAAGCGGGCGAGGGTGGAG
GCCCAGGCTATTGCCGACCAGTTGGGGGCGTTGCACCAGACGTCACAACA
GACCATCCACAAGATTGACTCTCTGGAGCAGCAGCTTTCCTCCCTCTTTG
ACATGACTGTCTTCCCTACATCTCTCGATGAAGGGAGGATGGAGAGTGCG
GAGCGAGCGGTGACCATCGCGGAAGAGATGGGAAGGAGGGAGGGAAGGAG
GGAGGGAGGAGGGGGCGCTTTGGAAGGGGCCCCGTTGACGAAGCAGAGGA
AGGTGATGTCTTTAATGGAGAAAGTGGGCGTGAAAAGCGGGTAGGAGGGA
AGGGAAAAGGGATGGAAGGAGGGAGTGAAGGAGGGAGGTGCAGACAGGGG
AGCTTGCCCGAAAAAAAAAATGGCTGAGAAGGAGGTCCAGAAAAAGAGGA
ACAGGAGGGGCCGACATGTACACACATGTTCACGTCTTTGGGAATCAGAA
CGATTGGGATAAATGGGAGAATGAAGCAGCCAAGCGCCA
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protein sequence of jgi.p|Nanoce1779_2|269404

>mRNA_9298-protein ID=mRNA_9298-protein|Name=jgi.p|Nanoce1779_2|269404|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MPQPTADSAAAPVSADTTTAAAAATAAGLPPQVAISVGGVEGVGGGVKGE
EKMHGSAGGVEGRETASLSSSSSSTLPTAINGSSSSSVVVRQALQHLRGE
LLNLSTSFPTSSPSSPSSSPLSHVAGSDGSSGASPSFPSSFPSAGLNASG
ARETEASEGGGEGEGGIPLSRTLSMTDPLSFWRGLSRTHSFGSMPSFGPG
AVHSLVDPSTASLPPSLPPPLLPFQSTASSCEGAPFAMGTAGDTSSPSLA
PGKEEGGKEDGLAPGIGVGMGVPPASFGRLNSLTQQPSLEMLAGKEEGGK
EGVRARKRARVEAQAIADQLGALHQTSQQTIHKIDSLEQQLSSLFDMTVF
PTSLDEGRMESAERAVTIAEEMGRREGRREGGGGALEGAPLTKQRKVMSL
MEKVGVKSG*
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mRNA from alignment at scaffold_35:20899..22845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9298 ID=mRNA_9298|Name=jgi.p|Nanoce1779_2|269404|organism=Nannochloropsis oceanica|type=mRNA|length=1947bp|location=Sequence derived from alignment at scaffold_35:20899..22845- (Nannochloropsis oceanica)
AGCAGCAGCAGCAGCTTCAGCAGCAGCAGCTTCAGCACCAGCAGCACCAG
CAGCACCAGCAGCTTCAGCAATTACAGCAGCAGCAGCAGCAACAACAGCA
GCAACAAGAGCAGCTGCAGCAGCAACAGCAGCCACCACCCAACAAGAGCT
GGCAAAAACGCACCGAGACACGCCTGTGGGAAGCTGAAGAACAAGTCCGT
ATTCTTCAACAAGAGAATCAACTGCTGTGGCGACAGGTCCAGAGCAACCA
TTCCTACTCTCGAGGTCTCCAGAAGGCCCAAATTAAACTTCTTAATATTA
TATCCGAGCATCTGATGCCGCAGCCTACAGCTGATTCTGCTGCTGCTCCA
GTTTCCGCTGATACTACTACTGCAGCTGCTGCTGCTACTGCTGCAGGGCT
TCCGCCTCAGGTTGCGATTTCAGTCGGGGGCGTGGAAGGAGTAGGGGGAG
GAGTAAAGGGGGAAGAGAAGATGCATGGAAGTGCTGGTGGTGTAGAGGGA
AGGGAAACGGCTAGCCTTTCCTCCTCCTCTTCCTCTACCCTCCCTACCGC
TATCAACGGCAGCAGCAGCAGCAGCGTCGTTGTGCGACAAGCTCTGCAGC
ACTTGCGTGGTGAACTACTGAACCTCTCCACCTCCTTCCCCACCTCTTCT
CCATCCTCTCCTTCCTCCTCCCCTCTCTCCCATGTCGCCGGCAGCGATGG
TAGTAGTGGCGCCTCCCCCTCCTTCCCTTCCTCCTTCCCCTCTGCCGGCT
TGAACGCCTCCGGCGCGCGAGAAACGGAGGCGAGCGAGGGTGGAGGAGAA
GGAGAAGGAGGAATACCCCTAAGTCGTACTTTGAGTATGACAGATCCCTT
GTCGTTCTGGCGGGGTCTCTCCAGGACTCACTCCTTTGGGTCTATGCCCT
CCTTTGGCCCTGGCGCCGTCCACTCCCTTGTTGACCCCAGCACGGCCTCC
CTCCCTCCCTCCCTCCCTCCCCCTCTCCTTCCCTTCCAATCCACCGCATC
GTCTTGCGAGGGGGCACCTTTTGCGATGGGCACGGCTGGCGACACCTCCT
CCCCTTCCCTGGCACCGGGAAAGGAGGAGGGAGGGAAGGAGGACGGGCTC
GCCCCTGGAATAGGTGTGGGGATGGGGGTCCCTCCTGCTAGCTTCGGACG
ACTCAACAGCTTGACCCAGCAGCCGTCGTTGGAGATGCTTGCGGGCAAGG
AGGAGGGAGGGAAGGAGGGAGTGAGGGCGAGGAAGCGGGCGAGGGTGGAG
GCCCAGGCTATTGCCGACCAGTTGGGGGCGTTGCACCAGACGTCACAACA
GGTGAGGGAGGATTGGCGGGGGAAGGGAAGAAGGAGAGGAAGGGGGGAAA
GAGGGAGAGATGGAGAAAAAGTGGTTTACGGATTTTTAAAAAAAATGTTT
TGTGCTATTTTCCCAAACTCATTGCACCAATTCGGATCCCTTCTTCTCCC
TCCCTCCCTTCCTCTCTCTCCCCCTCCCTCCCTCCCTCCCTCCATCCCTC
CCTCGCTAGACCATCCACAAGATTGACTCTCTGGAGCAGCAGCTTTCCTC
CCTCTTTGACATGACTGTCTTCCCTACATCTCTCGATGAAGGGAGGATGG
AGAGTGCGGAGCGAGCGGTGACCATCGCGGAAGAGATGGGAAGGAGGGAG
GGAAGGAGGGAGGGAGGAGGGGGCGCTTTGGAAGGGGCCCCGTTGACGAA
GCAGAGGAAGGTGATGTCTTTAATGGAGAAAGTGGGCGTGAAAAGCGGGT
AGGAGGGAAGGGAAAAGGGATGGAAGGAGGGAGTGAAGGAGGGAGGTGCA
GACAGGGGAGCTTGCCCGAAAAAAAAAATGGCTGAGAAGGAGGTCCAGAA
AAAGAGGAACAGGAGGGGCCGACATGTACACACATGTTCACGTCTTTGGG
AATCAGAACGATTGGGATAAATGGGAGAATGAAGCAGCCAAGCGCCA
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Coding sequence (CDS) from alignment at scaffold_35:20899..22845-

>mRNA_9298 ID=mRNA_9298|Name=jgi.p|Nanoce1779_2|269404|organism=Nannochloropsis oceanica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_35:20899..22845- (Nannochloropsis oceanica)
ACCATCCACAAGATTGACTCTCTGGAGCAGCAGCTTTCCTCCCTCTTTGA
CATGACTGTCTTCCCTACATCTCTCGATGAAGGGAGGATGGAGAGTGCGG
AGCGAGCGGTGACCATCGCGGAAGAGATGGGAAGGAGGGAGGGAAGGAGG
GAGGGAGGAGGGGGCGCTTTGGAAGGGGCCCCGTTGACGAAGCAGAGGAA
GGTGATGTCTTTAATGGAGAAAGTGGGCGTGAAAAGCGGGTAGATGCCGC
AGCCTACAGCTGATTCTGCTGCTGCTCCAGTTTCCGCTGATACTACTACT
GCAGCTGCTGCTGCTACTGCTGCAGGGCTTCCGCCTCAGGTTGCGATTTC
AGTCGGGGGCGTGGAAGGAGTAGGGGGAGGAGTAAAGGGGGAAGAGAAGA
TGCATGGAAGTGCTGGTGGTGTAGAGGGAAGGGAAACGGCTAGCCTTTCC
TCCTCCTCTTCCTCTACCCTCCCTACCGCTATCAACGGCAGCAGCAGCAG
CAGCGTCGTTGTGCGACAAGCTCTGCAGCACTTGCGTGGTGAACTACTGA
ACCTCTCCACCTCCTTCCCCACCTCTTCTCCATCCTCTCCTTCCTCCTCC
CCTCTCTCCCATGTCGCCGGCAGCGATGGTAGTAGTGGCGCCTCCCCCTC
CTTCCCTTCCTCCTTCCCCTCTGCCGGCTTGAACGCCTCCGGCGCGCGAG
AAACGGAGGCGAGCGAGGGTGGAGGAGAAGGAGAAGGAGGAATACCCCTA
AGTCGTACTTTGAGTATGACAGATCCCTTGTCGTTCTGGCGGGGTCTCTC
CAGGACTCACTCCTTTGGGTCTATGCCCTCCTTTGGCCCTGGCGCCGTCC
ACTCCCTTGTTGACCCCAGCACGGCCTCCCTCCCTCCCTCCCTCCCTCCC
CCTCTCCTTCCCTTCCAATCCACCGCATCGTCTTGCGAGGGGGCACCTTT
TGCGATGGGCACGGCTGGCGACACCTCCTCCCCTTCCCTGGCACCGGGAA
AGGAGGAGGGAGGGAAGGAGGACGGGCTCGCCCCTGGAATAGGTGTGGGG
ATGGGGGTCCCTCCTGCTAGCTTCGGACGACTCAACAGCTTGACCCAGCA
GCCGTCGTTGGAGATGCTTGCGGGCAAGGAGGAGGGAGGGAAGGAGGGAG
TGAGGGCGAGGAAGCGGGCGAGGGTGGAGGCCCAGGCTATTGCCGACCAG
TTGGGGGCGTTGCACCAGACGTCACAACAGACCATCCACAAGATTGACTC
TCTGGAGCAGCAGCTTTCCTCCCTCTTTGACATGACTGTCTTCCCTACAT
CTCTCGATGAAGGGAGGATGGAGAGTGCGGAGCGAGCGGTGACCATCGCG
GAAGAGATGGGAAGGAGGGAGGGAAGGAGGGAGGGAGGAGGGGGCGCTTT
GGAAGGGGCCCCGTTGACGAAGCAGAGGAAGGTGATGTCTTTAATGGAGA
AAGTGGGCGTGAAAAGCGGGTAGATGCCGCAGCCTACAGCTGATTCTGCT
GCTGCTCCAGTTTCCGCTGATACTACTACTGCAGCTGCTGCTGCTACTGC
TGCAGGGCTTCCGCCTCAGGTTGCGATTTCAGTCGGGGGCGTGGAAGGAG
TAGGGGGAGGAGTAAAGGGGGAAGAGAAGATGCATGGAAGTGCTGGTGGT
GTAGAGGGAAGGGAAACGGCTAGCCTTTCCTCCTCCTCTTCCTCTACCCT
CCCTACCGCTATCAACGGCAGCAGCAGCAGCAGCGTCGTTGTGCGACAAG
CTCTGCAGCACTTGCGTGGTGAACTACTGAACCTCTCCACCTCCTTCCCC
ACCTCTTCTCCATCCTCTCCTTCCTCCTCCCCTCTCTCCCATGTCGCCGG
CAGCGATGGTAGTAGTGGCGCCTCCCCCTCCTTCCCTTCCTCCTTCCCCT
CTGCCGGCTTGAACGCCTCCGGCGCGCGAGAAACGGAGGCGAGCGAGGGT
GGAGGAGAAGGAGAAGGAGGAATACCCCTAAGTCGTACTTTGAGTATGAC
AGATCCCTTGTCGTTCTGGCGGGGTCTCTCCAGGACTCACTCCTTTGGGT
CTATGCCCTCCTTTGGCCCTGGCGCCGTCCACTCCCTTGTTGACCCCAGC
ACGGCCTCCCTCCCTCCCTCCCTCCCTCCCCCTCTCCTTCCCTTCCAATC
CACCGCATCGTCTTGCGAGGGGGCACCTTTTGCGATGGGCACGGCTGGCG
ACACCTCCTCCCCTTCCCTGGCACCGGGAAAGGAGGAGGGAGGGAAGGAG
GACGGGCTCGCCCCTGGAATAGGTGTGGGGATGGGGGTCCCTCCTGCTAG
CTTCGGACGACTCAACAGCTTGACCCAGCAGCCGTCGTTGGAGATGCTTG
CGGGCAAGGAGGAGGGAGGGAAGGAGGGAGTGAGGGCGAGGAAGCGGGCG
AGGGTGGAGGCCCAGGCTATTGCCGACCAGTTGGGGGCGTTGCACCAGAC
GTCACAACAG
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Synonyms
Publications