jgi.p|Nanoce1779_2|274046, mRNA_9160 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|274046
Unique Name	mRNA_9160
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	742
Alignment location	scaffold_36:99729..100470 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	274132
Track	FilteredModels2
ProteinId	274046

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_36	supercontig	scaffold_36:99729..100470 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|274046	gene_9160	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|274046	mRNA_9160-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9160	CDS_9160	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_36:99729..100470+
coding sequence from alignment at scaffold_36:99729..100470+

mRNA sequence

>mRNA_9160 ID=mRNA_9160|Name=jgi.p|Nanoce1779_2|274046|organism=Nannochloropsis oceanica|type=mRNA|length=742bp
CTGATTTCTTAAAGCTCTACCCTCCCTCCTATTCTTTATGACCACAGACC
CATATGCTTTACTGAATACCATCCGACTCCTTTCCTTCTTCTCTCCCTCG
TCTTCCCCCTTGCATTCGCTTTCGAATGTACCTCTGATGCGGTACATGCA
CATAATTCCATTGCTTCTATCCATGTCTCTATCGCTTCCCTCCTGCCTTC
CTCTCTCCTTTTACCCACCTCCTTCGTCTTTGCCTACTGAAAGCCACGGC
CTACCTCATCCTTCTTATCGTCATACAAATGAAGGCCCCTTTCCCTTGCT
CCCTCCCTCTCTCCCTCATCACCAGCCCCAGCTCCTCCAAACGCTTGCCC
ACTACTCTGGCCACACGCAAACCACACACTCCTTCCCTCCCCCTCTCCCT
TCTTCCCTCCCTCCCTTAAATCCTACTTTGTCAACCCCTCCAAGCACTTA
TATAGCTCCTGAGCTTCCAATGGCGGGCCCACCTTACCCCCCAAAATGTC
GGCCAACCGCATCCCTCCCTCGTTCCCTCCCTCTCTCCCTCCCTCCCTCT
TTTTCCCGTACATCTGCTCGTTCATCCATCCTAACCCACACAGAAGCTGC
AGGGTCAGAGCACCGCCGGCGTACCACCCTTTACTCCCGGAAAATGCCCA
GACACACCTAGAAGGGAGCGAGGGAAGGGCGGAGGGAGGAGGGGAGGGAA
TGGAACACTGATCTCCTGTTGTTTCAATCATCGACCACCCCA

protein sequence of jgi.p|Nanoce1779_2|274046

>mRNA_9160-protein ID=mRNA_9160-protein|Name=jgi.p|Nanoce1779_2|274046|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MTTDPYALLNTIRLLSFFSPSSSPLHSLSNVPLMRYMHIIPLLLSMSLSL
PSCLPLSFYPPPSSLPTESHGLPHPSYRHTNEGPFPLLPPSLPHHQPQLL
QTLAHYSGHTQTTHSFPPPLPSSLPPLNPTLSTPPSTYIAPELPMAGPPY
PPKCRPTASLPRSLPLSLPPSFSRTSARSSILTHTEAAGSEHRRRTTLYS
RKMPRHT*

mRNA from alignment at scaffold_36:99729..100470+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9160 ID=mRNA_9160|Name=jgi.p|Nanoce1779_2|274046|organism=Nannochloropsis oceanica|type=mRNA|length=742bp|location=Sequence derived from alignment at scaffold_36:99729..100470+ (Nannochloropsis oceanica)
CTGATTTCTTAAAGCTCTACCCTCCCTCCTATTCTTTATGACCACAGACC
CATATGCTTTACTGAATACCATCCGACTCCTTTCCTTCTTCTCTCCCTCG
TCTTCCCCCTTGCATTCGCTTTCGAATGTACCTCTGATGCGGTACATGCA
CATAATTCCATTGCTTCTATCCATGTCTCTATCGCTTCCCTCCTGCCTTC
CTCTCTCCTTTTACCCACCTCCTTCGTCTTTGCCTACTGAAAGCCACGGC
CTACCTCATCCTTCTTATCGTCATACAAATGAAGGCCCCTTTCCCTTGCT
CCCTCCCTCTCTCCCTCATCACCAGCCCCAGCTCCTCCAAACGCTTGCCC
ACTACTCTGGCCACACGCAAACCACACACTCCTTCCCTCCCCCTCTCCCT
TCTTCCCTCCCTCCCTTAAATCCTACTTTGTCAACCCCTCCAAGCACTTA
TATAGCTCCTGAGCTTCCAATGGCGGGCCCACCTTACCCCCCAAAATGTC
GGCCAACCGCATCCCTCCCTCGTTCCCTCCCTCTCTCCCTCCCTCCCTCT
TTTTCCCGTACATCTGCTCGTTCATCCATCCTAACCCACACAGAAGCTGC
AGGGTCAGAGCACCGCCGGCGTACCACCCTTTACTCCCGGAAAATGCCCA
GACACACCTAGAAGGGAGCGAGGGAAGGGCGGAGGGAGGAGGGGAGGGAA
TGGAACACTGATCTCCTGTTGTTTCAATCATCGACCACCCCA

Coding sequence (CDS) from alignment at scaffold_36:99729..100470+

>mRNA_9160 ID=mRNA_9160|Name=jgi.p|Nanoce1779_2|274046|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_36:99729..100470+ (Nannochloropsis oceanica)
ATGACCACAGACCCATATGCTTTACTGAATACCATCCGACTCCTTTCCTT
CTTCTCTCCCTCGTCTTCCCCCTTGCATTCGCTTTCGAATGTACCTCTGA
TGCGGTACATGCACATAATTCCATTGCTTCTATCCATGTCTCTATCGCTT
CCCTCCTGCCTTCCTCTCTCCTTTTACCCACCTCCTTCGTCTTTGCCTAC
TGAAAGCCACGGCCTACCTCATCCTTCTTATCGTCATACAAATGAAGGCC
CCTTTCCCTTGCTCCCTCCCTCTCTCCCTCATCACCAGCCCCAGCTCCTC
CAAACGCTTGCCCACTACTCTGGCCACACGCAAACCACACACTCCTTCCC
TCCCCCTCTCCCTTCTTCCCTCCCTCCCTTAAATCCTACTTTGTCAACCC
CTCCAAGCACTTATATAGCTCCTGAGCTTCCAATGGCGGGCCCACCTTAC
CCCCCAAAATGTCGGCCAACCGCATCCCTCCCTCGTTCCCTCCCTCTCTC
CCTCCCTCCCTCTTTTTCCCGTACATCTGCTCGTTCATCCATCCTAACCC
ACACAGAAGCTGCAGGGTCAGAGCACCGCCGGCGTACCACCCTTTACTCC
CGGAAAATGCCCAGACACACCTAG

Synonyms

Publications