jgi.p|Nanoce1779_2|533459, mRNA_9699 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533459
Unique NamemRNA_9699
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1062
Alignment locationscaffold_38:162965..164026 +

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Properties
Property NameValue
TranscriptId533545
TrackFilteredModels2
ProteinId533459
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:162965..164026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533459gene_9699Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533459mRNA_9699-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9699CDS_9699Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9699 ID=mRNA_9699|Name=jgi.p|Nanoce1779_2|533459|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp
ATGCCAGCCGCTAGTGCCATCACTACTACTACCACCAAGACAAGCACCGT
CGTATGTTTCAAGTGTGCTGGGACGGGCCGCGTACAGGTCAAGCGCAAGC
TCAAGCGTCCCCGTCCGCCTTCTACCGCCTCTGACTACTCTGTCGAGCCA
GAGCCGGAGCTAGCGCTAGCCGCAAACGAAGCTCTCATCAAGCAAGGCAG
CCGCAACCTCCAAGTCATACAGTCATGTCATGTGTGCCAGGGGAATGGTG
TGCTCGTCTCAAGCAAGAAAGAACGGGGACTGGCCACAGCCGGCATTATC
ACAACGGCCCGGCGCCCACCCGGGTTTCGAGTGTGGGGTCCATTGCCCCC
ATCTGGGACAGCAATACCAAATCCGGTCGCAGGAGAAGCTCTCTGTTGTC
TCACGGGAGCCTGGCGAATTTTTCAGCCGCTCGGAGGGCATCGTTATTCG
ACGGATGATGTGGTGACGGCTTGGGTGGCGGGGCAAGAAGCACAACGAGG
GTGGGGAGCGTGGCTTTCCAAGTGGAGGGAAGGACAAGAAGGAATCGAAA
AGACGACACAAGATGCCTTTCTTCTAACAACGGACAGGACAACTGGCGAG
GAGGAGGAAATGGAAGCTGGAGAAAATATGCTGGGGCTTGACTTGGGCTG
CGGCTTGGGGAGCGTTCTAATGATGGTATGCTGGCAGCTACCACGCCTGC
GCTCGGTGGGTGTCGAGGCACAAGCAGCGTCAGTGGAACGGGCACGACGG
TCCTTGCTTGTGAATGGATGTTCTGATCGCGTTCAAGTCCAGCACGCGGA
CTTCCGGACCCTCTTTTCTTCCTCGTGCCCTTCCTTGCCCTCCTCGTGCC
CTTCCTTGCCCACCTTCTTCTCCCCATCCTCGCCTTCGTTCACGGATCCA
CCGCGTACAATTCCTCCCCCTCCCTCTGTGCGGCCCTCCCAGCCCCTCAT
AATAGAAGCACACTCGATTGACCTCATCACTGGCACTCCCCCGTACTTCG
ACGGTCACGGCGCCCCTCCTCCCTCTTACGCTTCGGATCCTCCCATCAAC
GTCTCCTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|533459

>mRNA_9699-protein ID=mRNA_9699-protein|Name=jgi.p|Nanoce1779_2|533459|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MPAASAITTTTTKTSTVVCFKCAGTGRVQVKRKLKRPRPPSTASDYSVEP
EPELALAANEALIKQGSRNLQVIQSCHVCQGNGVLVSSKKERGLATAGII
TTARRPPGFRVWGPLPPSGTAIPNPVAGEALCCLTGAWRIFQPLGGHRYS
TDDVVTAWVAGQEAQRGWGAWLSKWREGQEGIEKTTQDAFLLTTDRTTGE
EEEMEAGENMLGLDLGCGLGSVLMMVCWQLPRLRSVGVEAQAASVERARR
SLLVNGCSDRVQVQHADFRTLFSSSCPSLPSSCPSLPTFFSPSSPSFTDP
PRTIPPPPSVRPSQPLIIEAHSIDLITGTPPYFDGHGAPPPSYASDPPIN
VSSL
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mRNA from alignment at scaffold_38:162965..164026+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9699 ID=mRNA_9699|Name=jgi.p|Nanoce1779_2|533459|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp|location=Sequence derived from alignment at scaffold_38:162965..164026+ (Nannochloropsis oceanica)
ATGCCAGCCGCTAGTGCCATCACTACTACTACCACCAAGACAAGCACCGT
CGTATGTTTCAAGTGTGCTGGGACGGGCCGCGTACAGGTCAAGCGCAAGC
TCAAGCGTCCCCGTCCGCCTTCTACCGCCTCTGACTACTCTGTCGAGCCA
GAGCCGGAGCTAGCGCTAGCCGCAAACGAAGCTCTCATCAAGCAAGGCAG
CCGCAACCTCCAAGTCATACAGTCATGTCATGTGTGCCAGGGGAATGGTG
TGCTCGTCTCAAGCAAGAAAGAACGGGGACTGGCCACAGCCGGCATTATC
ACAACGGCCCGGCGCCCACCCGGGTTTCGAGTGTGGGGTCCATTGCCCCC
ATCTGGGACAGCAATACCAAATCCGGTCGCAGGAGAAGCTCTCTGTTGTC
TCACGGGAGCCTGGCGAATTTTTCAGCCGCTCGGAGGGCATCGTTATTCG
ACGGATGATGTGGTGACGGCTTGGGTGGCGGGGCAAGAAGCACAACGAGG
GTGGGGAGCGTGGCTTTCCAAGTGGAGGGAAGGACAAGAAGGAATCGAAA
AGACGACACAAGATGCCTTTCTTCTAACAACGGACAGGACAACTGGCGAG
GAGGAGGAAATGGAAGCTGGAGAAAATATGCTGGGGCTTGACTTGGGCTG
CGGCTTGGGGAGCGTTCTAATGATGGTATGCTGGCAGCTACCACGCCTGC
GCTCGGTGGGTGTCGAGGCACAAGCAGCGTCAGTGGAACGGGCACGACGG
TCCTTGCTTGTGAATGGATGTTCTGATCGCGTTCAAGTCCAGCACGCGGA
CTTCCGGACCCTCTTTTCTTCCTCGTGCCCTTCCTTGCCCTCCTCGTGCC
CTTCCTTGCCCACCTTCTTCTCCCCATCCTCGCCTTCGTTCACGGATCCA
CCGCGTACAATTCCTCCCCCTCCCTCTGTGCGGCCCTCCCAGCCCCTCAT
AATAGAAGCACACTCGATTGACCTCATCACTGGCACTCCCCCGTACTTCG
ACGGTCACGGCGCCCCTCCTCCCTCTTACGCTTCGGATCCTCCCATCAAC
GTCTCCTCCCTC
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Coding sequence (CDS) from alignment at scaffold_38:162965..164026+

>mRNA_9699 ID=mRNA_9699|Name=jgi.p|Nanoce1779_2|533459|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_38:162965..164026+ (Nannochloropsis oceanica)
ATGCCAGCCGCTAGTGCCATCACTACTACTACCACCAAGACAAGCACCGT
CGTATGTTTCAAGTGTGCTGGGACGGGCCGCGTACAGGTCAAGCGCAAGC
TCAAGCGTCCCCGTCCGCCTTCTACCGCCTCTGACTACTCTGTCGAGCCA
GAGCCGGAGCTAGCGCTAGCCGCAAACGAAGCTCTCATCAAGCAAGGCAG
CCGCAACCTCCAAGTCATACAGTCATGTCATGTGTGCCAGGGGAATGGTG
TGCTCGTCTCAAGCAAGAAAGAACGGGGACTGGCCACAGCCGGCATTATC
ACAACGGCCCGGCGCCCACCCGGGTTTCGAGTGTGGGGTCCATTGCCCCC
ATCTGGGACAGCAATACCAAATCCGGTCGCAGGAGAAGCTCTCTGTTGTC
TCACGGGAGCCTGGCGAATTTTTCAGCCGCTCGGAGGGCATCGTTATTCG
ACGGATGATGTGGTGACGGCTTGGGTGGCGGGGCAAGAAGCACAACGAGG
GTGGGGAGCGTGGCTTTCCAAGTGGAGGGAAGGACAAGAAGGAATCGAAA
AGACGACACAAGATGCCTTTCTTCTAACAACGGACAGGACAACTGGCGAG
GAGGAGGAAATGGAAGCTGGAGAAAATATGCTGGGGCTTGACTTGGGCTG
CGGCTTGGGGAGCGTTCTAATGATGGTATGCTGGCAGCTACCACGCCTGC
GCTCGGTGGGTGTCGAGGCACAAGCAGCGTCAGTGGAACGGGCACGACGG
TCCTTGCTTGTGAATGGATGTTCTGATCGCGTTCAAGTCCAGCACGCGGA
CTTCCGGACCCTCTTTTCTTCCTCGTGCCCTTCCTTGCCCTCCTCGTGCC
CTTCCTTGCCCACCTTCTTCTCCCCATCCTCGCCTTCGTTCACGGATCCA
CCGCGTACAATTCCTCCCCCTCCCTCTGTGCGGCCCTCCCAGCCCCTCAT
AATAGAAGCACACTCGATTGACCTCATCACTGGCACTCCCCCGTACTTCG
ACGGTCACGGCGCCCCTCCTCCCTCTTACGCTTCGGATCCTCCCATCAAC
GTCTCCTCCCTC
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Synonyms
Publications