jgi.p|Nanoce1779_2|578483, mRNA_1943 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578483
Unique NamemRNA_1943
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1480
Alignment locationscaffold_4:407510..408989 +

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Properties
Property NameValue
TranscriptId578569
TrackFilteredModels2
ProteinId578483
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:407510..408989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578483gene_1943Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578483mRNA_1943-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1943CDS_1943Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1943 ID=mRNA_1943|Name=jgi.p|Nanoce1779_2|578483|organism=Nannochloropsis oceanica|type=mRNA|length=1480bp
ACAGGCAATCATGACACGACACATACTTATGTGCCTGGCCGGCAGCCTGC
TCCATGCTACCATCACGTCCCAGGCCACCCCCCTCCCCGCCGCGGGAGGC
GTTCCTGTGGAGACCTTGGCCCAGCTGGGACAATTGATAGAAGCCACCTT
GGCATCTCCGACCCCTGCTGGAGAAGATTCCAGAGGAGTCCTTCACACTC
TTGCAGTATCTGAATCCCAGGAATACTGCGATACGTACCTGACGCTGGCC
TTGGGAGGTTTGTTGACCGAGTGCGCGACTTTGGCAAGGGACTTACAGTC
ACTGACCGGCACTACATCCGAGTGCAAGCGTGTGTACGATTTTTCCAAGC
CTAAGTTGGACAGCTTATGCTCCAACAAGTGCTATTCAGTCATGGTAGAT
GCTTTGGACAATATGGCCAAGGCGGGATGTGCACCCGATGGGCTCATCAA
GACCATGTGCGACCAATGCCCTGAGGATACAGTCTGCGTCAAGGGTGTCT
GCCGTCCCAAATGCTCCTCCAATCATCCATGCGCCTGCGACGATGAGTGT
GTGGATGGCAGTTGTAGGCCTTCGGATCAGGTCGGCGTACAGCAGACGGA
GATGGGGACCTTCGGGTACAAGATTTCGCTGGAGGTCATGTGTCTCAAAC
CCCCTCCTGTGAAGCCTATTGCTGCCAAAGCTGTCCCGGCAGTCTCGAAG
GATGCCCAGGCATTGCAATTGGTTGACAATGCAGCGCCGGCGGTGGAGCA
AGATTATTGTTTTACGAGCATGTTTGGGGCTTTGGAGAAGTTGACCCCCG
ACGTGTGCGACAAGATCGAGGCCACAGGATGCTGCGCGGGCACAGTGCTG
CAATACGGACTGAAATGTGCTTTGGCCAACGACTCCATAAGTGTGAATGA
CAGTGCACCTATGCAGTTGACAAATTTAATCAAGTTTTGCCCGAACGTCG
ATTTTCAGGCTGAATGTGCGAATACTCCCGTGTATGCCGCGGGTCAATGC
AAATTGGGGTACACAGATGGACCAGGCGTGGAGCTACCTTTCCCCAGCCT
AGCCAGTTTTGCCCGTTCAAGCTTTGATTTGGTGGGGGTGTATGCATTGG
GCGGGGGGATTGCTTTCATGTGCATGCTTTTGCTGGTGGTGACCGTGGTA
ACGAGGCGCGGGAATCTTCGCAAGCAGGCCGAGGCGGACAAGGCCGCTGA
GGCGATGAAGTCAAATCTGTCGACGCCCCTGGGGTCGCCCGTGGCCTCAC
CCATCGACAGTATTTAATCGAACGGATGCTTTGTAGTATTAAAAGGTTGG
GAGACAGGTGTTGTACATACGGATGTGAGGTTGGGATAGGGAGAAGATAA
CTAGAAAAGTACTTCAGCACTAATTGCAACAATAGGAAGAAAGGAAACGA
ATTCTGGCTGCATGAGACCACCGACCTTCTGGAAGAGAAAAACAATGAAT
GGGAAAGATGACTCCCATAAATTTTCAGTA
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protein sequence of jgi.p|Nanoce1779_2|578483

>mRNA_1943-protein ID=mRNA_1943-protein|Name=jgi.p|Nanoce1779_2|578483|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MTRHILMCLAGSLLHATITSQATPLPAAGGVPVETLAQLGQLIEATLASP
TPAGEDSRGVLHTLAVSESQEYCDTYLTLALGGLLTECATLARDLQSLTG
TTSECKRVYDFSKPKLDSLCSNKCYSVMVDALDNMAKAGCAPDGLIKTMC
DQCPEDTVCVKGVCRPKCSSNHPCACDDECVDGSCRPSDQVGVQQTEMGT
FGYKISLEVMCLKPPPVKPIAAKAVPAVSKDAQALQLVDNAAPAVEQDYC
FTSMFGALEKLTPDVCDKIEATGCCAGTVLQYGLKCALANDSISVNDSAP
MQLTNLIKFCPNVDFQAECANTPVYAAGQCKLGYTDGPGVELPFPSLASF
ARSSFDLVGVYALGGGIAFMCMLLLVVTVVTRRGNLRKQAEADKAAEAMK
SNLSTPLGSPVASPIDSI*
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mRNA from alignment at scaffold_4:407510..408989+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1943 ID=mRNA_1943|Name=jgi.p|Nanoce1779_2|578483|organism=Nannochloropsis oceanica|type=mRNA|length=1480bp|location=Sequence derived from alignment at scaffold_4:407510..408989+ (Nannochloropsis oceanica)
ACAGGCAATCATGACACGACACATACTTATGTGCCTGGCCGGCAGCCTGC
TCCATGCTACCATCACGTCCCAGGCCACCCCCCTCCCCGCCGCGGGAGGC
GTTCCTGTGGAGACCTTGGCCCAGCTGGGACAATTGATAGAAGCCACCTT
GGCATCTCCGACCCCTGCTGGAGAAGATTCCAGAGGAGTCCTTCACACTC
TTGCAGTATCTGAATCCCAGGAATACTGCGATACGTACCTGACGCTGGCC
TTGGGAGGTTTGTTGACCGAGTGCGCGACTTTGGCAAGGGACTTACAGTC
ACTGACCGGCACTACATCCGAGTGCAAGCGTGTGTACGATTTTTCCAAGC
CTAAGTTGGACAGCTTATGCTCCAACAAGTGCTATTCAGTCATGGTAGAT
GCTTTGGACAATATGGCCAAGGCGGGATGTGCACCCGATGGGCTCATCAA
GACCATGTGCGACCAATGCCCTGAGGATACAGTCTGCGTCAAGGGTGTCT
GCCGTCCCAAATGCTCCTCCAATCATCCATGCGCCTGCGACGATGAGTGT
GTGGATGGCAGTTGTAGGCCTTCGGATCAGGTCGGCGTACAGCAGACGGA
GATGGGGACCTTCGGGTACAAGATTTCGCTGGAGGTCATGTGTCTCAAAC
CCCCTCCTGTGAAGCCTATTGCTGCCAAAGCTGTCCCGGCAGTCTCGAAG
GATGCCCAGGCATTGCAATTGGTTGACAATGCAGCGCCGGCGGTGGAGCA
AGATTATTGTTTTACGAGCATGTTTGGGGCTTTGGAGAAGTTGACCCCCG
ACGTGTGCGACAAGATCGAGGCCACAGGATGCTGCGCGGGCACAGTGCTG
CAATACGGACTGAAATGTGCTTTGGCCAACGACTCCATAAGTGTGAATGA
CAGTGCACCTATGCAGTTGACAAATTTAATCAAGTTTTGCCCGAACGTCG
ATTTTCAGGCTGAATGTGCGAATACTCCCGTGTATGCCGCGGGTCAATGC
AAATTGGGGTACACAGATGGACCAGGCGTGGAGCTACCTTTCCCCAGCCT
AGCCAGTTTTGCCCGTTCAAGCTTTGATTTGGTGGGGGTGTATGCATTGG
GCGGGGGGATTGCTTTCATGTGCATGCTTTTGCTGGTGGTGACCGTGGTA
ACGAGGCGCGGGAATCTTCGCAAGCAGGCCGAGGCGGACAAGGCCGCTGA
GGCGATGAAGTCAAATCTGTCGACGCCCCTGGGGTCGCCCGTGGCCTCAC
CCATCGACAGTATTTAATCGAACGGATGCTTTGTAGTATTAAAAGGTTGG
GAGACAGGTGTTGTACATACGGATGTGAGGTTGGGATAGGGAGAAGATAA
CTAGAAAAGTACTTCAGCACTAATTGCAACAATAGGAAGAAAGGAAACGA
ATTCTGGCTGCATGAGACCACCGACCTTCTGGAAGAGAAAAACAATGAAT
GGGAAAGATGACTCCCATAAATTTTCAGTA
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Coding sequence (CDS) from alignment at scaffold_4:407510..408989+

>mRNA_1943 ID=mRNA_1943|Name=jgi.p|Nanoce1779_2|578483|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at scaffold_4:407510..408989+ (Nannochloropsis oceanica)
ATGACACGACACATACTTATGTGCCTGGCCGGCAGCCTGCTCCATGCTAC
CATCACGTCCCAGGCCACCCCCCTCCCCGCCGCGGGAGGCGTTCCTGTGG
AGACCTTGGCCCAGCTGGGACAATTGATAGAAGCCACCTTGGCATCTCCG
ACCCCTGCTGGAGAAGATTCCAGAGGAGTCCTTCACACTCTTGCAGTATC
TGAATCCCAGGAATACTGCGATACGTACCTGACGCTGGCCTTGGGAGGTT
TGTTGACCGAGTGCGCGACTTTGGCAAGGGACTTACAGTCACTGACCGGC
ACTACATCCGAGTGCAAGCGTGTGTACGATTTTTCCAAGCCTAAGTTGGA
CAGCTTATGCTCCAACAAGTGCTATTCAGTCATGGTAGATGCTTTGGACA
ATATGGCCAAGGCGGGATGTGCACCCGATGGGCTCATCAAGACCATGTGC
GACCAATGCCCTGAGGATACAGTCTGCGTCAAGGGTGTCTGCCGTCCCAA
ATGCTCCTCCAATCATCCATGCGCCTGCGACGATGAGTGTGTGGATGGCA
GTTGTAGGCCTTCGGATCAGGTCGGCGTACAGCAGACGGAGATGGGGACC
TTCGGGTACAAGATTTCGCTGGAGGTCATGTGTCTCAAACCCCCTCCTGT
GAAGCCTATTGCTGCCAAAGCTGTCCCGGCAGTCTCGAAGGATGCCCAGG
CATTGCAATTGGTTGACAATGCAGCGCCGGCGGTGGAGCAAGATTATTGT
TTTACGAGCATGTTTGGGGCTTTGGAGAAGTTGACCCCCGACGTGTGCGA
CAAGATCGAGGCCACAGGATGCTGCGCGGGCACAGTGCTGCAATACGGAC
TGAAATGTGCTTTGGCCAACGACTCCATAAGTGTGAATGACAGTGCACCT
ATGCAGTTGACAAATTTAATCAAGTTTTGCCCGAACGTCGATTTTCAGGC
TGAATGTGCGAATACTCCCGTGTATGCCGCGGGTCAATGCAAATTGGGGT
ACACAGATGGACCAGGCGTGGAGCTACCTTTCCCCAGCCTAGCCAGTTTT
GCCCGTTCAAGCTTTGATTTGGTGGGGGTGTATGCATTGGGCGGGGGGAT
TGCTTTCATGTGCATGCTTTTGCTGGTGGTGACCGTGGTAACGAGGCGCG
GGAATCTTCGCAAGCAGGCCGAGGCGGACAAGGCCGCTGAGGCGATGAAG
TCAAATCTGTCGACGCCCCTGGGGTCGCCCGTGGCCTCACCCATCGACAG
TATTTAA
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Synonyms
Publications