jgi.p|Nanoce1779_2|579697, mRNA_2272 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579697
Unique Name	mRNA_2272
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1703
Alignment location	scaffold_4:1237313..1239015 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579783
Track	FilteredModels2
ProteinId	579697

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1237313..1239015 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579697	gene_2272	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579697	mRNA_2272-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2272	CDS_2272	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1237313..1239015+
coding sequence from alignment at scaffold_4:1237313..1239015+

mRNA sequence

>mRNA_2272 ID=mRNA_2272|Name=jgi.p|Nanoce1779_2|579697|organism=Nannochloropsis oceanica|type=mRNA|length=1703bp
TAACTTTTATTCATATTTGATAGATATTCATGATGCCATATTAATTTAAC
TTCCAAATTTATTGCTGGCCATCGGCTCTGGTAATGTCGCGCCAGAAGAC
TTTTTTCACGGAATGAACAAGTAGAAGAAGCAAGAGAACCGAGGACCGAG
GCAAGGAATGAACAGGGCAGGAGGGTGAGCCTACAGGATATCTTATTCTC
CCTTCATGCAAAGAAAACCCGAAGGAGAAGACAACGCCGCAGAGCCATGA
GTCCATTCGAAGGTTTTATATCTACGTCCAAAGAGCCTACATCAACGATC
ACTACACCCCCGTCCTTATCCTCCTCCATATAAAAAATCACGCCGTTTAA
ACAGATTGATTGCATATAACACATGTACATGTATTGTATATACAGATATA
TATACATGTAAATACATAATAGATGTATACAAAGCCGTCTGGAGAGCATA
TGTTTAATGTGTGTGTATCTCCTTTCCAGGCCAAGGCGACGCTGGCCCTC
CCCCTCCGTCTAATTATATCCCACAACCACCATTACCAGATATTGTCTTC
CTCACTCCCTTCACCGCTGACGACGCTAAGGCGGCCGCGCGATCATGACG
CCGTCCGTCGCTGCCGCTTGAAAATGAATGCCTTCGGGGTCACTTGTTTC
TTCCAATCTCGAAGCATTCGGCTGGCGGGGACGACCTTACCCTGAAGGTC
CGTCACGCGGCGGAGCATGCGCAGGCGGGAGAGGGACTCGAGAAGCGCCA
TATTCTCAGGTACATTGCAGCGCTGGAACCACCCAGGTTTCTTGGCGAGG
TATTCGGAGATATATGCTGGTGGGTTCAAAAAGAGGGAAGGAGAGAGAAA
AGGGGAGAGGAAGGGGAGGAAAAGAAGGGAGGAAGAAATGCCGCTTGAGT
TAGAGCGGATCGAAGAGGCATTAAGGCGGTGTAATACAAGAGCATTGCCG
GCATGCGGTCTGAGACAGGAAACGGGATACAAGTTGGGAGGCAATCCAAT
ATTTCGCCCTCGTGACTCTGTCCTTTTTACTCTTTGCATCCTCTCATCCA
GCACCTATGCACTTCCTCCCTCCTTCCTCATTGTACACATACACGCACTC
ACCTCGCCCTTCGACAGTACGTTTAAGTGCGCGCAAGCCGACTCCTTTAA
ATTTACCCGATGGAAAGTATATAGGAAGACCCTGCCGACGCAAATTCGCG
ATCGTTTCCGTCTCTTCAACGCCCCACATGCCAGTCTCCATCCACGCCTC
ATCCGGCTCAGTGGCACAGCTGTCCTCGTCACTACTGCCACCGTGCTGGT
CTATTTCGTTTTGCTCCTCGGTCTTCTCCTGCCCCTGCTCCTCTGGCTCC
GTCTCGGCTTCCTCCTCTTCCTCCTCTTCCTCCTCTTCCTCTTCCTCATC
CTCCTCCTCTCCCGAATCCTCCTCCTCCTCCAGAAGACGACGAGGAGACG
GCATACCCCGCCACCACCACCGACGCGAGTGAGAAATACAAAGCAGGCCC
TGCTCATTCTTATCTTCTTCCTCGTCACTCTCATGTGCACGTGTGGTCAG
ACCGCTGCCACGGGAGATTACATAAGAGAGGGACGGGGTTGAAGACATGG
CTCCGCCTCCTGAAAAAGAAGAAGAGTGTTTGTCGCTGGCGGAGGCCGCC
ATGGTAGCAGTGAGTGCAGCTTTAGCAGAGCTCCTGGAATCGATAATTGT
GCT

protein sequence of jgi.p|Nanoce1779_2|579697

>mRNA_2272-protein ID=mRNA_2272-protein|Name=jgi.p|Nanoce1779_2|579697|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MRRRERDSRSAIFSGTLQRWNHPGFLARYSEIYAGGFKKREGERKGERKG
RKRREEEMPLELERIEEALRRCNTRALPACGLRQETGYKLGGNPIFRPRD
SVLFTLCILSSSTYALPPSFLIVHIHALTSPFDSTFKCAQADSFKFTRWK
VYRKTLPTQIRDRFRLFNAPHASLHPRLIRLSGTAVLVTTATVLVYFVLL
LGLLLPLLLWLRLGFLLFLLFLLFLFLILLLSRILLLLQKTTRRRHTPPP
PPTRVRNTKQALLILIFFLVTLMCTCGQTAATGDYIREGRG*

mRNA from alignment at scaffold_4:1237313..1239015+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2272 ID=mRNA_2272|Name=jgi.p|Nanoce1779_2|579697|organism=Nannochloropsis oceanica|type=mRNA|length=1703bp|location=Sequence derived from alignment at scaffold_4:1237313..1239015+ (Nannochloropsis oceanica)
TAACTTTTATTCATATTTGATAGATATTCATGATGCCATATTAATTTAAC
TTCCAAATTTATTGCTGGCCATCGGCTCTGGTAATGTCGCGCCAGAAGAC
TTTTTTCACGGAATGAACAAGTAGAAGAAGCAAGAGAACCGAGGACCGAG
GCAAGGAATGAACAGGGCAGGAGGGTGAGCCTACAGGATATCTTATTCTC
CCTTCATGCAAAGAAAACCCGAAGGAGAAGACAACGCCGCAGAGCCATGA
GTCCATTCGAAGGTTTTATATCTACGTCCAAAGAGCCTACATCAACGATC
ACTACACCCCCGTCCTTATCCTCCTCCATATAAAAAATCACGCCGTTTAA
ACAGATTGATTGCATATAACACATGTACATGTATTGTATATACAGATATA
TATACATGTAAATACATAATAGATGTATACAAAGCCGTCTGGAGAGCATA
TGTTTAATGTGTGTGTATCTCCTTTCCAGGCCAAGGCGACGCTGGCCCTC
CCCCTCCGTCTAATTATATCCCACAACCACCATTACCAGATATTGTCTTC
CTCACTCCCTTCACCGCTGACGACGCTAAGGCGGCCGCGCGATCATGACG
CCGTCCGTCGCTGCCGCTTGAAAATGAATGCCTTCGGGGTCACTTGTTTC
TTCCAATCTCGAAGCATTCGGCTGGCGGGGACGACCTTACCCTGAAGGTC
CGTCACGCGGCGGAGCATGCGCAGGCGGGAGAGGGACTCGAGAAGCGCCA
TATTCTCAGGTACATTGCAGCGCTGGAACCACCCAGGTTTCTTGGCGAGG
TATTCGGAGATATATGCTGGTGGGTTCAAAAAGAGGGAAGGAGAGAGAAA
AGGGGAGAGGAAGGGGAGGAAAAGAAGGGAGGAAGAAATGCCGCTTGAGT
TAGAGCGGATCGAAGAGGCATTAAGGCGGTGTAATACAAGAGCATTGCCG
GCATGCGGTCTGAGACAGGAAACGGGATACAAGTTGGGAGGCAATCCAAT
ATTTCGCCCTCGTGACTCTGTCCTTTTTACTCTTTGCATCCTCTCATCCA
GCACCTATGCACTTCCTCCCTCCTTCCTCATTGTACACATACACGCACTC
ACCTCGCCCTTCGACAGTACGTTTAAGTGCGCGCAAGCCGACTCCTTTAA
ATTTACCCGATGGAAAGTATATAGGAAGACCCTGCCGACGCAAATTCGCG
ATCGTTTCCGTCTCTTCAACGCCCCACATGCCAGTCTCCATCCACGCCTC
ATCCGGCTCAGTGGCACAGCTGTCCTCGTCACTACTGCCACCGTGCTGGT
CTATTTCGTTTTGCTCCTCGGTCTTCTCCTGCCCCTGCTCCTCTGGCTCC
GTCTCGGCTTCCTCCTCTTCCTCCTCTTCCTCCTCTTCCTCTTCCTCATC
CTCCTCCTCTCCCGAATCCTCCTCCTCCTCCAGAAGACGACGAGGAGACG
GCATACCCCGCCACCACCACCGACGCGAGTGAGAAATACAAAGCAGGCCC
TGCTCATTCTTATCTTCTTCCTCGTCACTCTCATGTGCACGTGTGGTCAG
ACCGCTGCCACGGGAGATTACATAAGAGAGGGACGGGGTTGAAGACATGG
CTCCGCCTCCTGAAAAAGAAGAAGAGTGTTTGTCGCTGGCGGAGGCCGCC
ATGGTAGCAGTGAGTGCAGCTTTAGCAGAGCTCCTGGAATCGATAATTGT
GCT

Coding sequence (CDS) from alignment at scaffold_4:1237313..1239015+

>mRNA_2272 ID=mRNA_2272|Name=jgi.p|Nanoce1779_2|579697|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_4:1237313..1239015+ (Nannochloropsis oceanica)
ATGCGCAGGCGGGAGAGGGACTCGAGAAGCGCCATATTCTCAGGTACATT
GCAGCGCTGGAACCACCCAGGTTTCTTGGCGAGGTATTCGGAGATATATG
CTGGTGGGTTCAAAAAGAGGGAAGGAGAGAGAAAAGGGGAGAGGAAGGGG
AGGAAAAGAAGGGAGGAAGAAATGCCGCTTGAGTTAGAGCGGATCGAAGA
GGCATTAAGGCGGTGTAATACAAGAGCATTGCCGGCATGCGGTCTGAGAC
AGGAAACGGGATACAAGTTGGGAGGCAATCCAATATTTCGCCCTCGTGAC
TCTGTCCTTTTTACTCTTTGCATCCTCTCATCCAGCACCTATGCACTTCC
TCCCTCCTTCCTCATTGTACACATACACGCACTCACCTCGCCCTTCGACA
GTACGTTTAAGTGCGCGCAAGCCGACTCCTTTAAATTTACCCGATGGAAA
GTATATAGGAAGACCCTGCCGACGCAAATTCGCGATCGTTTCCGTCTCTT
CAACGCCCCACATGCCAGTCTCCATCCACGCCTCATCCGGCTCAGTGGCA
CAGCTGTCCTCGTCACTACTGCCACCGTGCTGGTCTATTTCGTTTTGCTC
CTCGGTCTTCTCCTGCCCCTGCTCCTCTGGCTCCGTCTCGGCTTCCTCCT
CTTCCTCCTCTTCCTCCTCTTCCTCTTCCTCATCCTCCTCCTCTCCCGAA
TCCTCCTCCTCCTCCAGAAGACGACGAGGAGACGGCATACCCCGCCACCA
CCACCGACGCGAGTGAGAAATACAAAGCAGGCCCTGCTCATTCTTATCTT
CTTCCTCGTCACTCTCATGTGCACGTGTGGTCAGACCGCTGCCACGGGAG
ATTACATAAGAGAGGGACGGGGTTGA

Synonyms

Publications