jgi.p|Nanoce1779_2|608771, mRNA_10112 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608771
Unique NamemRNA_10112
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length920
Alignment locationscaffold_43:2736..4213 +

Link to JBrowse

Properties
Property NameValue
TranscriptId608857
TrackFilteredModels2
ProteinId608771
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:2736..4213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608771gene_10112Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608771mRNA_10112-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10112CDS_10112Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10112 ID=mRNA_10112|Name=jgi.p|Nanoce1779_2|608771|organism=Nannochloropsis oceanica|type=mRNA|length=920bp
CGGGCGTTGAGCAAGGCCTTTCGTTTGCTGGAGGAGGAAGAGGAGGAGGA
GGAGGAGGAGGTGGGGGCGGAAGAGGAGGAGGAGAAGGGGGAGGAGGGGG
AGAAGAAGGAAAACGACGGGAGAAATAGGGCAAAATGCATGCAGACGACA
AGTGCGACGACGATAATGAGCAGGAAAAGGAGGAGGAGGAGCAAACGACA
GCTAATGCGGGAGGGACGGCTTGGGAGAGGAGGGGGGGGAGGAGGACATG
AAGTAGGAGGTGGGCAGTGGCTGGACTGTCCTCGACACGCCTTCTTCCGC
ATCTACACTGCCAGGGCCTCCAAGGAACGCTCGATGTGCGACGAAGCCCT
TTTCAAGCTCTACGGCCTCTTCCAGAGACAGCGGGGCCGTGACTCCGTCG
GACAGGTCAAGCGTGTGCTGGCTGGACTCAAGGCCAGCATCCGTCTCCGT
CCCCTTCCCTGCGGTATCGTGGAGCACCAGCACACGCTCCTGGAAGGAAA
CACCCTACTTAATTTTGCTGCCCGCTGTGGCTGCATCAAAGTCAGCAAGT
ACCTGATCCTCTCTCTCCAGGCCTCCCTCCTCACCCAGGACGTGGGCGGT
TTCACTCCCTTGCTCAACGCCGTCTGGCGGAACGACCGGCCCATGGTCTC
CTTCCTCCTTTCCCTGCCGGCCTGCGACTTGTCCTACTTGCACGTAGGGA
AACCCTAACCCTAACCCTAACCTTTTTTCTGCTCCCTCTTACTCGCTGTA
TTCCCTCTTGCTTCTGCCCTCTCCCGCTTCCGCCCCTCTCTCCCTCCCTC
CCTCCCTTCTCTTGTGTCCGTGCTGTTCTCCGGCCGAGTGCACCCTCATC
CTCCCCCCCTCCTCTCCTCCTTCCCTCCCACCCTCCCTCGTCCAGCACAA
AGGCATGTCACGTGCCGAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|608771

>mRNA_10112-protein ID=mRNA_10112-protein|Name=jgi.p|Nanoce1779_2|608771|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MQTTSATTIMSRKRRRRSKRQLMREGRLGRGGGGGGHEVGGGQWLDCPRH
AFFRIYTARASKERSMCDEALFKLYGLFQRQRGRDSVGQVKRVLAGLKAS
IRLRPLPCGIVEHQHTLLEGNTLLNFAARCGCIKVSKYLILSLQASLLTQ
DVGGFTPLLNAVWRNDRPMVSFLLSLPACDLSYLHVGKP*
back to top

mRNA from alignment at scaffold_43:2736..4213+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10112 ID=mRNA_10112|Name=jgi.p|Nanoce1779_2|608771|organism=Nannochloropsis oceanica|type=mRNA|length=1478bp|location=Sequence derived from alignment at scaffold_43:2736..4213+ (Nannochloropsis oceanica)
CGGGCGTTGAGCAAGGCCTTTCGTTTGCTGGAGGAGGAAGAGGAGGAGGA
GGAGGAGGAGGTGGGGGCGGAAGAGGAGGAGGAGAAGGGGGAGGAGGGGG
AGAAGAAGGAAAACGACGGGAGAAATAGGGCAAAATGCATGCAGACGACA
AGTGCGACGACGATAATGAGCAGGAAAAGGAGGAGGAGGAGCAAACGACA
GCTAATGCGGGAGGGACGGCTTGGGAGAGGAGGGGGGGGAGGAGGACATG
AAGTAGGAGGTGGGCAGTGGCTGGACTGTCCTCGACACGCCTTCTTCCGC
ATGTAAGTCTTATTAAGTCTTTCTCGAAATCCATCTGGTCTAGTTTAACC
TAGTCTAATCTCTAATCTAGCTAATCTAATCTCTGATCTAATCTCTAATC
TAATCTCTAATCTATAAATCTAACCCAGTCTAATTTAGCCTAATTTTGCG
GCGCCCTCAACACCCTCTCTTCTCCTTCGGTCCTCCCTCCCTCCCTCCCT
CCCTCCCTAGCTACACTGCCAGGGCCTCCAAGGAACGCTCGATGTGCGAC
GAAGCCCTTTTCAAGCTCTACGGCCTCTTCCAGAGACAGCGGGGCCGTGA
CTCCGTCGGACAGGTCAAGCGTGTGCTGGCTGGACTCAAGGTGGGTAGGT
TGGAGGAGCCCTCCCTCCCTCTCTATCTCCCTCTCTCCCTCCCCCTGCTC
CCCTCTCTCCCATTTTCCCCTCTGCCCTCCTCAGACTCCCCAATTGACCT
CTTCCCTCGGGACCCTCCCTCCTTCCCTCCCTCCCTCCCTTGCTCCCTCG
CTCTCTCGCTCTCTTCCTCCCCCTTTGCCCGCTCTCTGATTCTCCTAGGC
CAGCATCCGTCTCCGTCCCCTTCCCTGCGGTATCGTGGAGCACCAGCACA
CGCTCCTGGAAGGAAACACCCTACTTAATTTTGCTGCCCGCTGTGGCTGC
ATCAAAGTACGCTCCCTCCCTTTCTCCCTCCCTCCCTTTGTCTTTCCCTC
AATCCCTTCCTCCGGGTATACGGTTTTACCCATGCCGAAGATTTCTCCTT
TTCTATCGTCACCTCATCCCTCCACCCCTCCCTCTTTCCCTCCCACAGGT
CAGCAAGTACCTGATCCTCTCTCTCCAGGCCTCCCTCCTCACCCAGGACG
TGGGCGGTTTCACTCCCTTGCTCAACGCCGTCTGGCGGAACGACCGGCCC
ATGGTCTCCTTCCTCCTTTCCCTGCCGGCCTGCGACTTGTCCTACTTGCA
CGTAGGGAAACCCTAACCCTAACCCTAACCTTTTTTCTGCTCCCTCTTAC
TCGCTGTATTCCCTCTTGCTTCTGCCCTCTCCCGCTTCCGCCCCTCTCTC
CCTCCCTCCCTCCCTTCTCTTGTGTCCGTGCTGTTCTCCGGCCGAGTGCA
CCCTCATCCTCCCCCCCTCCTCTCCTCCTTCCCTCCCACCCTCCCTCGTC
CAGCACAAAGGCATGTCACGTGCCGAGG
back to top

Coding sequence (CDS) from alignment at scaffold_43:2736..4213+

>mRNA_10112 ID=mRNA_10112|Name=jgi.p|Nanoce1779_2|608771|organism=Nannochloropsis oceanica|type=CDS|length=2280bp|location=Sequence derived from alignment at scaffold_43:2736..4213+ (Nannochloropsis oceanica)
ATGCAGACGACAAGTGCGACGACGATAATGAGCAGGAAAAGGAGGAGGAG
GAGCAAACGACAGCTAATGCGGGAGGGACGGCTTGGGAGAGGAGGGGGGG
GAGGAGGACATGAAGTAGGAGGTGGGCAGTGGCTGGACTGTCCTCGACAC
GCCTTCTTCCGCATCTACACTGCCAGGGCCTCCAAGGAACGCTCGATGTG
CGACGAAGCCCTTTTCAAGCTCTACGGCCTCTTCCAGAGACAGCGGGGCC
GTGACTCCGTCGGACAGGTCAAGCGTGTGCTGGCTGGACTCAAGGCCAGC
ATCCGTCTCCGTCCCCTTCCCTGCGGTATCGTGGAGCACCAGCACACGCT
CCTGGAAGGAAACACCCTACTTAATTTTGCTGCCCGCTGTGGCTGCATCA
AAGTCAGCAAGTACCTGATCCTCTCTCTCCAGGCCTCCCTCCTCACCCAG
GACGTGGGCGGTTTCACTCCCTTGCTCAACGCCGTCTGGCGGAACGACCG
GCCCATGGTCTCCTTCCTCCTTTCCCTGCCGGCCTGCGACTTGTCCTACT
TGCACGTAGGGAAACCCTAAATGCAGACGACAAGTGCGACGACGATAATG
AGCAGGAAAAGGAGGAGGAGGAGCAAACGACAGCTAATGCGGGAGGGACG
GCTTGGGAGAGGAGGGGGGGGAGGAGGACATGAAGTAGGAGGTGGGCAGT
GGCTGGACTGTCCTCGACACGCCTTCTTCCGCATCTACACTGCCAGGGCC
TCCAAGGAACGCTCGATGTGCGACGAAGCCCTTTTCAAGCTCTACGGCCT
CTTCCAGAGACAGCGGGGCCGTGACTCCGTCGGACAGGTCAAGCGTGTGC
TGGCTGGACTCAAGGCCAGCATCCGTCTCCGTCCCCTTCCCTGCGGTATC
GTGGAGCACCAGCACACGCTCCTGGAAGGAAACACCCTACTTAATTTTGC
TGCCCGCTGTGGCTGCATCAAAGTCAGCAAGTACCTGATCCTCTCTCTCC
AGGCCTCCCTCCTCACCCAGGACGTGGGCGGTTTCACTCCCTTGCTCAAC
GCCGTCTGGCGGAACGACCGGCCCATGGTCTCCTTCCTCCTTTCCCTGCC
GGCCTGCGACTTGTCCTACTTGCACGTAGGGAAACCCTAAATGCAGACGA
CAAGTGCGACGACGATAATGAGCAGGAAAAGGAGGAGGAGGAGCAAACGA
CAGCTAATGCGGGAGGGACGGCTTGGGAGAGGAGGGGGGGGAGGAGGACA
TGAAGTAGGAGGTGGGCAGTGGCTGGACTGTCCTCGACACGCCTTCTTCC
GCATCTACACTGCCAGGGCCTCCAAGGAACGCTCGATGTGCGACGAAGCC
CTTTTCAAGCTCTACGGCCTCTTCCAGAGACAGCGGGGCCGTGACTCCGT
CGGACAGGTCAAGCGTGTGCTGGCTGGACTCAAGGCCAGCATCCGTCTCC
GTCCCCTTCCCTGCGGTATCGTGGAGCACCAGCACACGCTCCTGGAAGGA
AACACCCTACTTAATTTTGCTGCCCGCTGTGGCTGCATCAAAGTCAGCAA
GTACCTGATCCTCTCTCTCCAGGCCTCCCTCCTCACCCAGGACGTGGGCG
GTTTCACTCCCTTGCTCAACGCCGTCTGGCGGAACGACCGGCCCATGGTC
TCCTTCCTCCTTTCCCTGCCGGCCTGCGACTTGTCCTACTTGCACGTAGG
GAAACCCTAAATGCAGACGACAAGTGCGACGACGATAATGAGCAGGAAAA
GGAGGAGGAGGAGCAAACGACAGCTAATGCGGGAGGGACGGCTTGGGAGA
GGAGGGGGGGGAGGAGGACATGAAGTAGGAGGTGGGCAGTGGCTGGACTG
TCCTCGACACGCCTTCTTCCGCATCTACACTGCCAGGGCCTCCAAGGAAC
GCTCGATGTGCGACGAAGCCCTTTTCAAGCTCTACGGCCTCTTCCAGAGA
CAGCGGGGCCGTGACTCCGTCGGACAGGTCAAGCGTGTGCTGGCTGGACT
CAAGGCCAGCATCCGTCTCCGTCCCCTTCCCTGCGGTATCGTGGAGCACC
AGCACACGCTCCTGGAAGGAAACACCCTACTTAATTTTGCTGCCCGCTGT
GGCTGCATCAAAGTCAGCAAGTACCTGATCCTCTCTCTCCAGGCCTCCCT
CCTCACCCAGGACGTGGGCGGTTTCACTCCCTTGCTCAACGCCGTCTGGC
GGAACGACCGGCCCATGGTCTCCTTCCTCCTTTCCCTGCCGGCCTGCGAC
TTGTCCTACTTGCACGTAGGGAAACCCTAA
back to top
Synonyms
Publications