jgi.p|Nanoce1779_2|608897, mRNA_10132 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|608897
Unique Name	mRNA_10132
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1002
Alignment location	scaffold_43:100699..102385 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	608983
Track	FilteredModels2
ProteinId	608897

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_43	supercontig	scaffold_43:100699..102385 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608897	gene_10132	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608897	mRNA_10132-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10132	CDS_10132	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_43:100699..102385+
coding sequence from alignment at scaffold_43:100699..102385+

mRNA sequence

>mRNA_10132 ID=mRNA_10132|Name=jgi.p|Nanoce1779_2|608897|organism=Nannochloropsis oceanica|type=mRNA|length=1002bp
GGGCGGTATTGCATCCTCTTTGTACCGGTTTAGCGTCTCTTTGCTCGGCA
TGGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGAGAACGAGGAAGGG
AGAGAGGAAAGGGGGAAGCAGCATTCTTCCCCTCCCTTGAACAAGAGGGT
GACGGATCCGCTGCTGCTGCCGGCGTCAAACCCCTATTTTGGGAGCACCG
AGTCTCTCCTTCCATCCTACCCGGATTTACGCAAGCAAGCTGGCCTGGCC
TGCGTCTACACCACGCCTCCTCTCGTCTTGACACGGGCTCGGACCCCTTT
CGCGCCTTGCCAGCAGCTGACGTACCGCTTTCGATTGGCCCTACCTGCGC
ACCTCCTTCCCTCCTACAATCGAGGCACAGGCGCCCGTTTCTTCTACATG
TGTACGGTGGCCGTCGGCGGGCAAGGGCAAGAACGGCCCATGCGCTACAT
CCACATTCCCTTTACTGTCCTCTCCTCGGGCTTCATGGACCTCCCCATGC
CCCCTTCAAATTACGTGGCTGTGGGTTTCCTCGAGGGGGAAGAAGTTCAC
TCCCGGCTAATCGGAGAAGAAGAAAGGAGAGAGATTTACGGGGAAGGTAG
AGAAGGAAGGAGGGAGAGAGGGGGGGAGGGAGGACCGATAGATTCCGTCC
TGTGTCAACTGTAATTTTAAATACCCCCCTGATTTCTACCTCCAACGACA
ATCCGTTAATAAACAGGCGGTAACGACCAGGACGAAGGCGAGCGTGGATT
TTGCTGGAGGCGCTTCTCAGCCAAGTATCTACGGAATGCCAACGAGGAGG
TCATCCCTCACAACTACCACGATGACTCTGACAATGAGGAGGAGGAGGAA
TGGAAGGATGATCGCAACGACGTCTACATGGCGGGGCTGACCTTCCGCCC
TTCCTCCCTCCCACCCTCGTCCTCCCTCCCGTCCTCGCCGGCCAGAAGAG
GAGGCCCTGCATGCACGATTTATGCTATCCGAAACGGGACCGCTAATTTA
GG

protein sequence of jgi.p|Nanoce1779_2|608897

>mRNA_10132-protein ID=mRNA_10132-protein|Name=jgi.p|Nanoce1779_2|608897|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MGGGGGGGEGGGENEEGREERGKQHSSPPLNKRVTDPLLLPASNPYFGST
ESLLPSYPDLRKQAGLACVYTTPPLVLTRARTPFAPCQQLTYRFRLALPA
HLLPSYNRGTGARFFYMCTVAVGGQGQERPMRYIHIPFTVLSSGFMDLPM
PPSNYVAVGFLEGEEVHSRLIGEEERREIYGEGREGRRERGGEGGPIDSV
LCQL*

mRNA from alignment at scaffold_43:100699..102385+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10132 ID=mRNA_10132|Name=jgi.p|Nanoce1779_2|608897|organism=Nannochloropsis oceanica|type=mRNA|length=1687bp|location=Sequence derived from alignment at scaffold_43:100699..102385+ (Nannochloropsis oceanica)
GGGCGGTATTGCATCCTCTTTGTACCGGTTTAGCGTCTCTTTGCTCGGCA
TGGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGAGAACGAGGAAGGG
AGAGAGGAAAGGGGGAAGCAGCATTCTTCCCCTCCCTTGAACAAGAGGGT
GACGGATCCGCTGCTGCTGCCGGCGTCAAACCCCTATTTTGGGAGCACCG
AGGTAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGCGGGATGGAGGGAG
GGAGGGACGGGTATGAACGGTCCTGGCCTTATTACTTCCTTCCTTCCTCC
TCTCGTCCCTCCTTCCCTCCCTCAGTCTCTCCTTCCATCCTACCCGGATT
TACGCAAGCAAGCTGGCCTGGCCTGCGTCTACACCACGCCTCCTCTCGTC
TTGACACGGGCTCGGACCCCTTTCGCGCCTTGCCAGCAGCTGACGTACCG
CTTTCGATTGGCCCTACCTGCGCACCTCCTTCCCTCCTACAATCGAGGTA
GGCGTTGGGTTTGTTATCTGTTTCCAGCTTCTTTTTTCCTTTTTCTCTTT
CTTTTTCTTGTCCTGTTCGTCGTCTCGACGCAGTTTGGCACTAACTTCCT
CCCTCCCTCCCTCCCTTCCCAGGCACAGGCGCCCGTTTCTTCTACATGTG
TACGGTGGCCGTCGGCGGGCAAGGGCAAGAACGGCCCATGCGCTACATCC
ACATTCCCTTTACTGTCCTCTCCTCGGGCTTCATGGGTACGTCCTCCCGC
CCTCCCGCCCTCCCGTCCTCCCTCCCTCCTTCCTTCCACCCCGTCTCCGC
CTCACCGATATCCATTCCCTCCCTCCCGCCCTCCTTCCCTCTTTCCCCCC
CTCCCTCCCCTCCTCCCTCCAGACCTCCCCATGCCCCCTTCAAATTACGT
GGCTGTGGGTTTCCTCGAGGGGGAAGAAGTTCACTCCCGGCTAATCGGAG
AAGAAGAAAGGAGAGAGATTTACGGGGAAGGTAGAGAAGGAAGGAGGGAG
AGAGGGGGGGAGGGAGGACCGATAGATTCCGTCCTGTGTCAACTGTAATT
TTAAATACCCCCCTGATTTCTACCTCCAACGACAATCCGTTAATAAACAG
GCGGTAACGACCAGGACGAAGGCGAGCGTGGATTTTGCTGGAGGCGCTTC
TCAGCCAAGGTACGAAAAATATCCCTACCCTCCTTCCCTCCCTTCCTCCT
TCCTTCCTTGCCATTTTTCCCTCCCTCCATTCCTCCCGGCTTTGCACCGA
CTGATCCTCTCTCCCCCCCGCAGTATCTACGGAATGCCAACGAGGAGGTC
ATCCCTCACAACTACCACGATGACTCTGACAATGAGGAGGAGGAGGAATG
GAAGGATGATCGGTAAGAAAAGAGGAAGGGAGGGAGGAAGGGAAGAAGAG
AGGGAGGAAAGCCGTGATATCGATAGGAGGGGAGACAGAAGAGGAGAAGC
AGATAGGATAATTCTAATATTTTTTCTTTCTTTTCCTCCCTCCCTCCCTC
CCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCCACTTCTCCAGC
AACGACGTCTACATGGCGGGGCTGACCTTCCGCCCTTCCTCCCTCCCACC
CTCGTCCTCCCTCCCGTCCTCGCCGGCCAGAAGAGGAGGCCCTGCATGCA
CGATTTATGCTATCCGAAACGGGACCGCTAATTTAGG

Coding sequence (CDS) from alignment at scaffold_43:100699..102385+

>mRNA_10132 ID=mRNA_10132|Name=jgi.p|Nanoce1779_2|608897|organism=Nannochloropsis oceanica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_43:100699..102385+ (Nannochloropsis oceanica)
ATGGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGAGAACGAGGAAGG
GAGAGAGGAAAGGGGGAAGCAGCATTCTTCCCCTCCCTTGAACAAGAGGG
TGACGGATCCGCTGCTGCTGCCGGCGTCAAACCCCTATTTTGGGAGCACC
GAGTCTCTCCTTCCATCCTACCCGGATTTACGCAAGCAAGCTGGCCTGGC
CTGCGTCTACACCACGCCTCCTCTCGTCTTGACACGGGCTCGGACCCCTT
TCGCGCCTTGCCAGCAGCTGACGTACCGCTTTCGATTGGCCCTACCTGCG
CACCTCCTTCCCTCCTACAATCGAGGCACAGGCGCCCGTTTCTTCTACAT
GTGTACGGTGGCCGTCGGCGGGCAAGGGCAAGAACGGCCCATGCGCTACA
TCCACATTCCCTTTACTGTCCTCTCCTCGGGCTTCATGGACCTCCCCATG
CCCCCTTCAAATTACGTGGCTGTGGGTTTCCTCGAGGGGGAAGAAGTTCA
CTCCCGGCTAATCGGAGAAGAAGAAAGGAGAGAGATTTACGGGGAAGGTA
GAGAAGGAAGGAGGGAGAGAGGGGGGGAGGGAGGACCGATAGATTCCGTC
CTGTGTCAACTGTAAATGGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGG
AGAGAACGAGGAAGGGAGAGAGGAAAGGGGGAAGCAGCATTCTTCCCCTC
CCTTGAACAAGAGGGTGACGGATCCGCTGCTGCTGCCGGCGTCAAACCCC
TATTTTGGGAGCACCGAGTCTCTCCTTCCATCCTACCCGGATTTACGCAA
GCAAGCTGGCCTGGCCTGCGTCTACACCACGCCTCCTCTCGTCTTGACAC
GGGCTCGGACCCCTTTCGCGCCTTGCCAGCAGCTGACGTACCGCTTTCGA
TTGGCCCTACCTGCGCACCTCCTTCCCTCCTACAATCGAGGCACAGGCGC
CCGTTTCTTCTACATGTGTACGGTGGCCGTCGGCGGGCAAGGGCAAGAAC
GGCCCATGCGCTACATCCACATTCCCTTTACTGTCCTCTCCTCGGGCTTC
ATGGACCTCCCCATGCCCCCTTCAAATTACGTGGCTGTGGGTTTCCTCGA
GGGGGAAGAAGTTCACTCCCGGCTAATCGGAGAAGAAGAAAGGAGAGAGA
TTTACGGGGAAGGTAGAGAAGGAAGGAGGGAGAGAGGGGGGGAGGGAGGA
CCGATAGATTCCGTCCTGTGTCAACTGTAAATGGGAGGAGGAGGAGGAGG
AGGAGAAGGAGGAGGAGAGAACGAGGAAGGGAGAGAGGAAAGGGGGAAGC
AGCATTCTTCCCCTCCCTTGAACAAGAGGGTGACGGATCCGCTGCTGCTG
CCGGCGTCAAACCCCTATTTTGGGAGCACCGAGTCTCTCCTTCCATCCTA
CCCGGATTTACGCAAGCAAGCTGGCCTGGCCTGCGTCTACACCACGCCTC
CTCTCGTCTTGACACGGGCTCGGACCCCTTTCGCGCCTTGCCAGCAGCTG
ACGTACCGCTTTCGATTGGCCCTACCTGCGCACCTCCTTCCCTCCTACAA
TCGAGGCACAGGCGCCCGTTTCTTCTACATGTGTACGGTGGCCGTCGGCG
GGCAAGGGCAAGAACGGCCCATGCGCTACATCCACATTCCCTTTACTGTC
CTCTCCTCGGGCTTCATGGACCTCCCCATGCCCCCTTCAAATTACGTGGC
TGTGGGTTTCCTCGAGGGGGAAGAAGTTCACTCCCGGCTAATCGGAGAAG
AAGAAAGGAGAGAGATTTACGGGGAAGGTAGAGAAGGAAGGAGGGAGAGA
GGGGGGGAGGGAGGACCGATAGATTCCGTCCTGTGTCAACTGTAAATGGG
AGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGAGAACGAGGAAGGGAGAG
AGGAAAGGGGGAAGCAGCATTCTTCCCCTCCCTTGAACAAGAGGGTGACG
GATCCGCTGCTGCTGCCGGCGTCAAACCCCTATTTTGGGAGCACCGAGTC
TCTCCTTCCATCCTACCCGGATTTACGCAAGCAAGCTGGCCTGGCCTGCG
TCTACACCACGCCTCCTCTCGTCTTGACACGGGCTCGGACCCCTTTCGCG
CCTTGCCAGCAGCTGACGTACCGCTTTCGATTGGCCCTACCTGCGCACCT
CCTTCCCTCCTACAATCGAGGCACAGGCGCCCGTTTCTTCTACATGTGTA
CGGTGGCCGTCGGCGGGCAAGGGCAAGAACGGCCCATGCGCTACATCCAC
ATTCCCTTTACTGTCCTCTCCTCGGGCTTCATGGACCTCCCCATGCCCCC
TTCAAATTACGTGGCTGTGGGTTTCCTCGAGGGGGAAGAAGTTCACTCCC
GGCTAATCGGAGAAGAAGAAAGGAGAGAGATTTACGGGGAAGGTAGAGAA
GGAAGGAGGGAGAGAGGGGGGGAGGGAGGACCGATAGATTCCGTCCTGTG
TCAACTGTAA

Synonyms

Publications