jgi.p|Nanoce1779_2|580510, mRNA_2480 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580510
Unique NamemRNA_2480
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length662
Alignment locationscaffold_5:445964..447431 -

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Properties
Property NameValue
TranscriptId580596
TrackFilteredModels2
ProteinId580510
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:445964..447431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580510gene_2480Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580510mRNA_2480-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2480CDS_2480Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2480 ID=mRNA_2480|Name=jgi.p|Nanoce1779_2|580510|organism=Nannochloropsis oceanica|type=mRNA|length=662bp
ACAGGCTCCGCTGGTTGTTTGGATTGCGTAGCTTTGACAGCCGCCGCGTC
GTCTTGCCACCCGTCATAGTCATCGCAGAGAGCGACAGGAACACTTGCGT
CTCCAAATCGAATAGCACTCTTAGTCATGAGGGGCACCTACATAGACCCC
AATACAAACATCCGCTACGACACCAATAATGCGGACTTTGAAGGGTGGTT
GACAAAGCAGAGCAGCTGGCTGAAGGATTGGAGGAGACGATACTTCATCC
TCAAGGGTAGCAAACTGTTCTTCGCCAAGAACGAGGCGGGATCCCCCCAC
GGGATGATCGACCTTTCGTCGTGCATGACCGTCAAATCCGCGGAGCTCAA
AGCCCAAAAGCGAAACGCTCTAGAAGTCTCCACCCCTGAGACCACCTTCT
TAATGTACGCGGACACGGAGAAAGAAAAAGATGACTGGATCGGTGCAGTC
GGTCGTGCCATTGTGCGGAGCTCGACCACGTACACGCAGGAGGTGGGGGA
GGGGGGAGATGACGACGACGGGAGTGATAGTGAAGAGGACTAGGGCGGGG
TTGGAACGGAAGGCGGGATGTGTTTTTTGTATAGCTTACACAACAGCTCT
AGCCAATGAGGATGATAAGAAAGAGGAGACAGACAGAAAGAAAGGAAGCC
GATGAAATGTCA
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protein sequence of jgi.p|Nanoce1779_2|580510

>mRNA_2480-protein ID=mRNA_2480-protein|Name=jgi.p|Nanoce1779_2|580510|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MRGTYIDPNTNIRYDTNNADFEGWLTKQSSWLKDWRRRYFILKGSKLFFA
KNEAGSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKE
KDDWIGAVGRAIVRSSTTYTQEVGEGGDDDDGSDSEED*
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mRNA from alignment at scaffold_5:445964..447431-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2480 ID=mRNA_2480|Name=jgi.p|Nanoce1779_2|580510|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp|location=Sequence derived from alignment at scaffold_5:445964..447431- (Nannochloropsis oceanica)
ACAGGCTCCGCTGGTTGTTTGGATTGCGTAGCTTTGACAGCCGCCGCGTC
GTCTTGCCACCCGTCATAGTCATCGCAGAGAGCGACAGGAACACTTGCGT
CTCCAAATCGAATAGCACTCTTAGTCATGAGGGGCACCTACATAGACCCC
AATACAAACATCCGCTACGACACCAATAATGCGGACTTTGAAGGTACGTG
GGTGTGCTGGCCAAGCTGTTTTTTTTAAAAGCAAATCAAGGGAAGACGGT
GGGGCTGAATGCCATAAATAGGTCAGAAAACCCACCTCTCTCAAAGAACC
TAGGGTTCTGACCCAGCAGAAACGGCCCAGAGAGTATGCCTATGATCCGT
AGTCCTGCTCTGTCTTGTGCTGTGTAGAAACTGGGTCTGCTGTATGTGGT
GGCTCAGGCTCTGGTTCCTCATTCTTGGTAGCGTTGGAGAGGCCTAGAAA
AAATTAGTCTGGCAGAATCACAGCCCAAGAAGCCAGGGATATCACGCCAC
TTCCACGACTCAGGCATAACTGGCATCAATATAGGATTGATTGCTGCTTG
GCTCCGGTTTCAGGCTTGCCCCCAAAATATGGCTCAACAGCCTGACTAAG
AAGTGAACCAAGTTGCCAGTGGTTCCTCCGACGTTTGGGACCAGTCCCTC
GATGAAGATTGTCCATAACGAGCTCTTATGCGCACCCGTTTCCATTTACA
ACATATAACAGGGTGGTTGACAAAGCAGAGCAGCTGGCTGAAGGATTGGA
GGAGACGATACTTCATCCTCAAGGGTAGCAAACTGTTCTTCGCCAAGGTG
GGAGGAGGGTGGGGCGGTCGAGCTGCGGAGGGTTTAAGTCGGGTGGAGGG
ATCAAAATGAATAGGGGGGGGTGGAATGGAGTGCTTGTATCCCAATTAGC
TTTGCACGTAACCTCTTGGTGCGGTCGATTGGTTCTTGGTGTGGGAATGG
CCAGGGTGTGCACCGCCACACGGTCCACTTCCCACCACCTGTTGAATTAT
CAGTCTCCAAGAGGGTTTCCTCCCCCCACAGCACCCGCACTTACCATCAT
CCACTCTCTCCGCTCCCCACTATCTTAATAAACAGAACGAGGCGGGATCC
CCCCACGGGATGATCGACCTTTCGTCGTGCATGACCGTCAAATCCGCGGA
GCTCAAAGCCCAAAAGCGAAACGCTCTAGAAGTCTCCACCCCTGAGACCA
CCTTCTTAATGTACGCGGACACGGAGAAAGAAAAAGATGACTGGATCGGT
GCAGTCGGTCGTGCCATTGTGCGGAGCTCGACCACGTACACGCAGGAGGT
GGGGGAGGGGGGAGATGACGACGACGGGAGTGATAGTGAAGAGGACTAGG
GCGGGGTTGGAACGGAAGGCGGGATGTGTTTTTTGTATAGCTTACACAAC
AGCTCTAGCCAATGAGGATGATAAGAAAGAGGAGACAGACAGAAAGAAAG
GAAGCCGATGAAATGTCA
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Coding sequence (CDS) from alignment at scaffold_5:445964..447431-

>mRNA_2480 ID=mRNA_2480|Name=jgi.p|Nanoce1779_2|580510|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_5:445964..447431- (Nannochloropsis oceanica)
AACGAGGCGGGATCCCCCCACGGGATGATCGACCTTTCGTCGTGCATGAC
CGTCAAATCCGCGGAGCTCAAAGCCCAAAAGCGAAACGCTCTAGAAGTCT
CCACCCCTGAGACCACCTTCTTAATGTACGCGGACACGGAGAAAGAAAAA
GATGACTGGATCGGTGCAGTCGGTCGTGCCATTGTGCGGAGCTCGACCAC
GTACACGCAGGAGGTGGGGGAGGGGGGAGATGACGACGACGGGAGTGATA
GTGAAGAGGACTAGGGTGGTTGACAAAGCAGAGCAGCTGGCTGAAGGATT
GGAGGAGACGATACTTCATCCTCAAGGGTAGCAAACTGTTCTTCGCCAAG
ATGAGGGGCACCTACATAGACCCCAATACAAACATCCGCTACGACACCAA
TAATGCGGACTTTGAAGAACGAGGCGGGATCCCCCCACGGGATGATCGAC
CTTTCGTCGTGCATGACCGTCAAATCCGCGGAGCTCAAAGCCCAAAAGCG
AAACGCTCTAGAAGTCTCCACCCCTGAGACCACCTTCTTAATGTACGCGG
ACACGGAGAAAGAAAAAGATGACTGGATCGGTGCAGTCGGTCGTGCCATT
GTGCGGAGCTCGACCACGTACACGCAGGAGGTGGGGGAGGGGGGAGATGA
CGACGACGGGAGTGATAGTGAAGAGGACTAGGGTGGTTGACAAAGCAGAG
CAGCTGGCTGAAGGATTGGAGGAGACGATACTTCATCCTCAAGGGTAGCA
AACTGTTCTTCGCCAAGATGAGGGGCACCTACATAGACCCCAATACAAAC
ATCCGCTACGACACCAATAATGCGGACTTTGAAGAACGAGGCGGGATCCC
CCCACGGGATGATCGACCTTTCGTCGTGCATGACCGTCAAATCCGCGGAG
CTCAAAGCCCAAAAGCGAAACGCTCTAGAAGTCTCCACCCCTGAGACCAC
CTTCTTAATGTACGCGGACACGGAGAAAGAAAAAGATGACTGGATCGGTG
CAGTCGGTCGTGCCATTGTGCGGAGCTCGACCACGTACACGCAGGAGGTG
GGGGAGGGGGGAGATGACGACGACGGGAGTGATAGTGAAGAGGACTAGGG
TGGTTGACAAAGCAGAGCAGCTGGCTGAAGGATTGGAGGAGACGATACTT
CATCCTCAAGGGTAGCAAACTGTTCTTCGCCAAGATGAGGGGCACCTACA
TAGACCCCAATACAAACATCCGCTACGACACCAATAATGCGGACTTTGAA
G
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Synonyms
Publications