jgi.p|Nanoce1779_2|325334, mRNA_2319 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|325334
Unique NamemRNA_2319
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1565
Alignment locationscaffold_5:19513..21228 -

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Properties
Property NameValue
TranscriptId325420
TrackFilteredModels2
ProteinId325334
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:19513..21228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|325334gene_2319Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|325334mRNA_2319-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2319CDS_2319Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2319 ID=mRNA_2319|Name=jgi.p|Nanoce1779_2|325334|organism=Nannochloropsis oceanica|type=mRNA|length=1565bp
GATGTCAACGACTTTTACATCCTCGAGCTGGATTTTTGCGAAGAGGGAGA
AACGGTGGGTGGGAGCAGCAGCTACAGCAGCAGCCGCACGACAATCTGTC
GTGGCGTGCATCTCCTGCGTCCGTCCCTCCTCCTGGGTCAGCCATTGACC
TCTCGTGCGTATGGAAGTATGACTCTCCTTTCCTCCATCCCGCCTTCTAA
ATTCCTCCTCCTCCTCCTCCTCTCTGTCTGCCCCCCTGCGTCTCCTCTTG
CTCGGCGGCATCCACCACGGGCAGGCCATCATGCAGCCCGAACTTCTCAC
CTTCCATGGCTTCGACAAGGACGATGAGGGAAGGAGGGAGGGTGGGGGCG
TGTGGGAGGTGGCGAGGCCAGTGCTAAAGGGCCCGGAACCGAGAGGACGG
ATGGGTCACAGCTGCTCTTTCCTGCCTGGCTTGCGGTGTCTGGTAGTGGT
GGGCGGATCGGATGGCTCGGACCTCTTGCGGAATGGGCGTGAGTTGTTGC
AGCAGGTGTATTTCATTGCATTGGAGGAGAAAGAGGAGGGGGAGGGTGAG
GAGGAGGAGGAAGGAGGGGAGGAAGAGCAGATGGGGGGGAGTGGTGGTGG
AAGAAAGAAGAAGAGGAAGGAGGATGAGCAGGGAGGGCAGTCGTTATTGT
GGCCGACGCGATGGACGATGCCGGGGGGGGATCGGAATGCGGCCCCGACT
CAGAGGCATGAGACTTTCACCGGGAGGACGCACACGGCGCATGTGCTGAT
GGAGGAAGGGGGTCTTGGGGAGGCTGATACGCTGCAGGGGCTGCAGCTGG
CGGTGAGGGAGAAAGGGAGGGCCAAGTTGCTTTTGTTTGGGGGGGACTCG
CGTTTGAGCGACGCAGTGGGGGTGATGGAGGTGCAGGAGGTGGGGCAGGC
AGGCGGGAAGGGATACTCCAAGACTGTTGAGTTCCACCCCTTGCGGCGTC
TGACTGAGCGGCGGCCTGGCCCCCGTTTGTCACATGCTTCGGTCTTGACG
GGGGAGAGGCTGTTGGTGTACGGGGGATGGTGTGAGTACGAAAAGGGTGA
CATGCACAGCCTGTACTTAACGCCGCCCTTGGCCATCAAGGCTTCCTCGT
CGGGGGAATATCAGTCGCCCCCGGGGATAGGGGGCTTGGATCTCGATATG
CATGTTGGGGAAATGAGTGAGGAGGATGTTGAGGAAGAGGAGGAAGAAGA
AGAGGAGGAGGAGGATAGCAACTATGTCGGGAGCAGTGATGAGGGTAGCG
ATCACGTCTGGAGCAGCACTGGGGGTAGTGAGAAACTGAAGAGAGTGTTT
TGGTATAAACGAGTGGAAGGGTGTAGGGACATGGTAAAGATCGAAAGAGG
GGTGCATGTAAAAGTGATGCTGGAAACGAATGTAGATAAGACGGCTTCTG
GAGTCGGAAGGAAGCGGCATACGGAGTCGGGAGTAAAAGTCAGTGGAGGG
GGAGGATGTGCGGACAAGATATCAGGAAAAAGGCAATATATAAGAAACGA
CAGAGAAAAGAGGAAAGAGGATTAGATGGGTGGAAGATGGAGCGCCTATT
TTATGAAGGTGGTGT
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protein sequence of jgi.p|Nanoce1779_2|325334

>mRNA_2319-protein ID=mRNA_2319-protein|Name=jgi.p|Nanoce1779_2|325334|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MQPELLTFHGFDKDDEGRREGGGVWEVARPVLKGPEPRGRMGHSCSFLPG
LRCLVVVGGSDGSDLLRNGRELLQQVYFIALEEKEEGEGEEEEEGGEEEQ
MGGSGGGRKKKRKEDEQGGQSLLWPTRWTMPGGDRNAAPTQRHETFTGRT
HTAHVLMEEGGLGEADTLQGLQLAVREKGRAKLLLFGGDSRLSDAVGVME
VQEVGQAGGKGYSKTVEFHPLRRLTERRPGPRLSHASVLTGERLLVYGGW
CEYEKGDMHSLYLTPPLAIKASSSGEYQSPPGIGGLDLDMHVGEMSEEDV
EEEEEEEEEEEDSNYVGSSDEGSDHVWSSTGGSEKLKRVFWYKRVEGCRD
MVKIERGVHVKVMLETNVDKTASGVGRKRHTESGVKVSGGGGCADKISGK
RQYIRNDREKRKED*
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mRNA from alignment at scaffold_5:19513..21228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2319 ID=mRNA_2319|Name=jgi.p|Nanoce1779_2|325334|organism=Nannochloropsis oceanica|type=mRNA|length=1716bp|location=Sequence derived from alignment at scaffold_5:19513..21228- (Nannochloropsis oceanica)
GATGTCAACGACTTTTACATCCTCGAGCTGGATTTTTGCGAAGAGGGAGA
AACGGTGGGTGGGAGCAGCAGCTACAGCAGCAGCCGCACGACAATCTGTC
GTGGCGTGCATCTCCTGCGTCCGTCCCTCCTCCTGGGTCAGCCATTGACC
TCTCGTGCGTATGGAAGTATGACTCTCCTTTCCTCCATCCCGCCTTCTAA
ATGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCT
CTGTCTGCCCCCCTGCGTCTCCTCTTGCTCGGCGGCATCCACCACGGGCA
GGCCATCATGCAGCCCGAACTTCTCACCTTCCATGGCTTCGACAAGGACG
ATGAGGGAAGGAGGGAGGGTGGGGGCGTGTGGGAGGTGGCGAGGCCAGTG
CTAAAGGGCCCGGAACCGAGAGGACGGATGGGTCACAGCTGCTCTTTCCT
GCCTGGCTTGCGGTGTCTGGTAGTGGTGGGCGGATCGGATGGCTCGGACC
TCTTGCGGAATGGGCGTGAGTTGTTGCAGCAGGTGTATTTCATTGCATTG
GAGGAGAAAGAGGAGGGGGAGGGTGAGGAGGAGGAGGAAGGAGGGGAGGA
AGAGCAGATGGGGGGGAGTGGTGGTGGAAGAAAGAAGAAGAGGAAGGAGG
ATGAGCAGGGAGGGCAGTCGTTATTGTGGCCGACGCGATGGACGATGCCG
GGGGGGGATCGGAATGCGGCCCCGACTCAGAGGCATGAGACTTTCACCGG
GAGGACGCACACGGCGCATGTGCTGATGGAGGAAGGGGGTCTTGGGGAGG
CTGATACGCTGCAGGGGCTGCAGCTGGCGGTGAGGGAGAAAGGGAGGGCC
AAGTTGCTTTTGTTTGGGGGGGACTCGCGTTTGAGCGACGCAGTGGGGGT
GATGGAGGTGCAGGAGGTGGGGCAGGCAGGCGGGAAGGGATACTCCAAGA
CTGTTGAGTTCCACCCCTTGCGGCGTCTGACTGAGCGGCGGCCTGGCCCC
CGTTTGTCACATGCTTCGGTCTTGACGGGGGAGAGGCTGTTGGTGTACGG
GGGATGGTGTGAGTACGAAAAGGGTGACATGCACAGCCTGTACTTAACGC
CGCCCTTGGCCATCAAGGCTTCCTCGTCGGGGGAATATCAGTCGCCCCCG
GGGATAGGGGGCTTGGATCTCGATATGCATGTTGGGGAAATGAGTGAGGA
GGATGTTGAGGAAGAGGAGGAAGAAGAAGAGGAGGAGGAGGATAGCAACT
ATGTCGGGAGCAGTGATGAGGGTAGCGATCACGTCTGGAGCAGCACTGGG
GGTAGTGAGAGTGAGGATGAGGGTGGGGAGGAGGAAGAGGAGGAGGAAGA
GGAGGAGGAGGAGGAGGAGGAAGAGGCGAAGGAGAACTGAAGAGAGTGTT
TTGGTATAAACGAGTGGAAGGGTGTAGGGACATGGTAAAGATCGAAAGAG
GGGTGCATGTAAAAGTGATGCTGGAAACGAATGTAGATAAGACGGCTTCT
GGAGTCGGAAGGAAGCGGCATACGGAGTCGGGAGTAAAAGTCAGTGGAGG
GGGAGGATGTGCGGACAAGATATCAGGAAAAAGGCAATATATAAGAAACG
ACAGAGAAAAGAGGAAAGAGGATTAGATGGGTGGAAGATGGAGCGCCTAT
TTTATGAAGGTGGTGT
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Coding sequence (CDS) from alignment at scaffold_5:19513..21228-

>mRNA_2319 ID=mRNA_2319|Name=jgi.p|Nanoce1779_2|325334|organism=Nannochloropsis oceanica|type=CDS|length=2490bp|location=Sequence derived from alignment at scaffold_5:19513..21228- (Nannochloropsis oceanica)
AACTGAAGAGAGTGTTTTGGTATAAACGAGTGGAAGGGTGTAGGGACATG
GTAAAGATCGAAAGAGGGGTGCATGTAAAAGTGATGCTGGAAACGAATGT
AGATAAGACGGCTTCTGGAGTCGGAAGGAAGCGGCATACGGAGTCGGGAG
TAAAAGTCAGTGGAGGGGGAGGATGTGCGGACAAGATATCAGGAAAAAGG
CAATATATAAGAAACGACAGAGAAAAGAGGAAAGAGGATTAGATGCAGCC
CGAACTTCTCACCTTCCATGGCTTCGACAAGGACGATGAGGGAAGGAGGG
AGGGTGGGGGCGTGTGGGAGGTGGCGAGGCCAGTGCTAAAGGGCCCGGAA
CCGAGAGGACGGATGGGTCACAGCTGCTCTTTCCTGCCTGGCTTGCGGTG
TCTGGTAGTGGTGGGCGGATCGGATGGCTCGGACCTCTTGCGGAATGGGC
GTGAGTTGTTGCAGCAGGTGTATTTCATTGCATTGGAGGAGAAAGAGGAG
GGGGAGGGTGAGGAGGAGGAGGAAGGAGGGGAGGAAGAGCAGATGGGGGG
GAGTGGTGGTGGAAGAAAGAAGAAGAGGAAGGAGGATGAGCAGGGAGGGC
AGTCGTTATTGTGGCCGACGCGATGGACGATGCCGGGGGGGGATCGGAAT
GCGGCCCCGACTCAGAGGCATGAGACTTTCACCGGGAGGACGCACACGGC
GCATGTGCTGATGGAGGAAGGGGGTCTTGGGGAGGCTGATACGCTGCAGG
GGCTGCAGCTGGCGGTGAGGGAGAAAGGGAGGGCCAAGTTGCTTTTGTTT
GGGGGGGACTCGCGTTTGAGCGACGCAGTGGGGGTGATGGAGGTGCAGGA
GGTGGGGCAGGCAGGCGGGAAGGGATACTCCAAGACTGTTGAGTTCCACC
CCTTGCGGCGTCTGACTGAGCGGCGGCCTGGCCCCCGTTTGTCACATGCT
TCGGTCTTGACGGGGGAGAGGCTGTTGGTGTACGGGGGATGGTGTGAGTA
CGAAAAGGGTGACATGCACAGCCTGTACTTAACGCCGCCCTTGGCCATCA
AGGCTTCCTCGTCGGGGGAATATCAGTCGCCCCCGGGGATAGGGGGCTTG
GATCTCGATATGCATGTTGGGGAAATGAGTGAGGAGGATGTTGAGGAAGA
GGAGGAAGAAGAAGAGGAGGAGGAGGATAGCAACTATGTCGGGAGCAGTG
ATGAGGGTAGCGATCACGTCTGGAGCAGCACTGGGGGTAGTGAGAAACTG
AAGAGAGTGTTTTGGTATAAACGAGTGGAAGGGTGTAGGGACATGGTAAA
GATCGAAAGAGGGGTGCATGTAAAAGTGATGCTGGAAACGAATGTAGATA
AGACGGCTTCTGGAGTCGGAAGGAAGCGGCATACGGAGTCGGGAGTAAAA
GTCAGTGGAGGGGGAGGATGTGCGGACAAGATATCAGGAAAAAGGCAATA
TATAAGAAACGACAGAGAAAAGAGGAAAGAGGATTAGATGCAGCCCGAAC
TTCTCACCTTCCATGGCTTCGACAAGGACGATGAGGGAAGGAGGGAGGGT
GGGGGCGTGTGGGAGGTGGCGAGGCCAGTGCTAAAGGGCCCGGAACCGAG
AGGACGGATGGGTCACAGCTGCTCTTTCCTGCCTGGCTTGCGGTGTCTGG
TAGTGGTGGGCGGATCGGATGGCTCGGACCTCTTGCGGAATGGGCGTGAG
TTGTTGCAGCAGGTGTATTTCATTGCATTGGAGGAGAAAGAGGAGGGGGA
GGGTGAGGAGGAGGAGGAAGGAGGGGAGGAAGAGCAGATGGGGGGGAGTG
GTGGTGGAAGAAAGAAGAAGAGGAAGGAGGATGAGCAGGGAGGGCAGTCG
TTATTGTGGCCGACGCGATGGACGATGCCGGGGGGGGATCGGAATGCGGC
CCCGACTCAGAGGCATGAGACTTTCACCGGGAGGACGCACACGGCGCATG
TGCTGATGGAGGAAGGGGGTCTTGGGGAGGCTGATACGCTGCAGGGGCTG
CAGCTGGCGGTGAGGGAGAAAGGGAGGGCCAAGTTGCTTTTGTTTGGGGG
GGACTCGCGTTTGAGCGACGCAGTGGGGGTGATGGAGGTGCAGGAGGTGG
GGCAGGCAGGCGGGAAGGGATACTCCAAGACTGTTGAGTTCCACCCCTTG
CGGCGTCTGACTGAGCGGCGGCCTGGCCCCCGTTTGTCACATGCTTCGGT
CTTGACGGGGGAGAGGCTGTTGGTGTACGGGGGATGGTGTGAGTACGAAA
AGGGTGACATGCACAGCCTGTACTTAACGCCGCCCTTGGCCATCAAGGCT
TCCTCGTCGGGGGAATATCAGTCGCCCCCGGGGATAGGGGGCTTGGATCT
CGATATGCATGTTGGGGAAATGAGTGAGGAGGATGTTGAGGAAGAGGAGG
AAGAAGAAGAGGAGGAGGAGGATAGCAACTATGTCGGGAGCAGTGATGAG
GGTAGCGATCACGTCTGGAGCAGCACTGGGGGTAGTGAGA
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Synonyms
Publications