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Properties
| Property Name | Value |
|---|
| TranscriptId | 581658 |
| Track | FilteredModels2 |
| ProteinId | 581572 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:1183233..1189089 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2786 ID=mRNA_2786|Name=jgi.p|Nanoce1779_2|581572|organism=Nannochloropsis oceanica|type=mRNA|length=320bp
ACCCCTAGCACCGCGCCAATGCCTTGGAAGATTGTCGCCCACTTCTTACC
GAGCTCCTCTCCACTGCTCGTGCCCGGCCCCGTGTGGGCTGTCGAGGAGA
AGCCCCCCCGCAGCACGCGTCCCTTTCCTGGCCCGGGAAGCGTGCTCCCT
CTCCGTGCCATGGCCCCAGCCTTCGCCGTGAAGCGCCGAAGCATGTTGTC
CCCCTGGTGGTCGTGGTTGATGATGGCAGCAAGCAGCGAGGCAAGCATGC
AAGCGGTGCATATTGTTGTGGTGTAGTGGTGGGAGGGAGGGAAGGGGAAT
GAGGCAGTGTTTGAGGTCGG back to topprotein sequence of jgi.p|Nanoce1779_2|581572 >mRNA_2786-protein ID=mRNA_2786-protein|Name=jgi.p|Nanoce1779_2|581572|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MPWKIVAHFLPSSSPLLVPGPVWAVEEKPPRSTRPFPGPGSVLPLRAMAP
AFAVKRRSMLSPWWSWLMMAASSEASMQAVHIVVV* back to topmRNA from alignment at scaffold_5:1183233..1189089+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2786 ID=mRNA_2786|Name=jgi.p|Nanoce1779_2|581572|organism=Nannochloropsis oceanica|type=mRNA|length=5857bp|location=Sequence derived from alignment at scaffold_5:1183233..1189089+ (Nannochloropsis oceanica)
ACCCCTAGCACCGCGCCAATGCCTTGGAAGATTGTCGCCCACTTCTTACC
GAGCTCCTCTCCACTGCTCGTGCCCGGCCCCGTGTGGGCTGTCGAGGAGA
AGCCCCCCCGCAGCACGCGTCCCTTTCCTGTTGGGTGTGTATGGATGTGC
GTGTGCGTGAACACCTTGACGCGGGCCCTTGTCCGCATAACAAAGATTGC
AACGCAAACGACACAGACACGCAGACAAAGGGGGAATCAACATGCCTCGG
CCAGACTGCGGTCGCGTGCACTGAACGCGCACTCCCACCCCATCAACAAG
CCCGAGTTCTTCCTAAATGCATCACACACGCCACCTCACCTGGCCCGGGA
AGCGTGCTCCCTCTCCGTGCCATGGCCCCAGCCTTCGCCGTGAAGCGCCG
AAGCATGTTGTCCCCCTGGTGGTCGTGGTTGATGATGGCAGCAAGCAGCG
AGGCAAGCATGCAAGCGGTGCATGTTGTTGTGGTGTAGTGGTGGGAGGGA
GGGAAGGGGAATGAGGCAGTGTTTGAGGTCGGTTTCCAAGCCGCCCTAAA
TACAACTAACAAGCTCTTCAGAACCAAACTCGTTACGCCGTCAGCGTCAA
ACCCTCCCCCTCCGCATCCTAGACCACAGGTTGGTGGCGGTGCGGGTGCC
CCTGGCTTGCCAAAGGGCAAGACCAAAAGGGGATGGGGGACAAGAAGAGG
CTTGCTTGATGATGATGATGCATGGAAGGCACACACAGAGCACACCCACC
ACCGCGACGCCAGCCACAGACGCCACGACCATATAGAGGGTGCGACGTGA
CAAACCTCTACGGATGGGGTGGTGGTGGGTGGTATTGAGTGTGGTGCTGC
GCACAAGACTGGGCCTAGGGAGAGACATGCTAGACTGGCTGCTGGCTGCT
GGGCGGGGGTCCACAAAGCTTGTTGAGCCTCCTTACGTGCCGCCTTTCTA
AGTAGTATGTGTGTATATTACGCAAACAGGCCTTGGTGCTGGCACTATTA
ACAACACAACACCGCCTCTAGCACGCCCCTCCGTGCCTTTCTTCCGGGGT
CCAAAGCTTCCGCTACAATCCATTGACTCATACCATGACTTCCTCCCTCC
TTCCCACCGTGTCTGCCCCCTCCTTCGACGGGTCGCCTCGGTCTGCTGCC
GTCAAGCGGCAGGGGCTTGGTTGGACAAGTCGAAAGCAGGGTCGGCGGCG
TTAGTGTGGGGGGGATGGATATGAGCCAGTGCATCAAATCATCAAAGACA
AAGGAAAAACTCGCTTGATACAAGTTGTGGGGAGCCCTCGTTATTACGTT
TCTCGTGTATGAGTCCTATCCCCCTCCTGCCCATCTCTCTACTGCACAAC
CCCGTCCACTGTACATGTCTTTGAATGTGTCTTTCTACATGGTTTCCATT
TATATTAAGGTAGGGCCCCGAATCCTAATTCTCCTCTTCCTTCTCCTCCA
ATCCGCCGGTTCCTCCCCTCTTTTTACGTTTGTCCACAAGCGCGGCCTGA
TAAGGCTCATAGTCTTGAGTGTAAGCCAGTTGGATCTCGCGCTTGAACCG
CTCCACCTCCGCCTTCCAAAACACTTCCGACATTGTCCGCTTGTCCTCCA
AACGCGCGATCTCCGCCGCCGCCTTGTCCTCCACACGCGCCATCTCCGCC
GCCGCCTTGCTCTCGATGTGCCTGATCTCAGTCTGGTCGAAAGTACGCAC
GACCACAGCGGTAGCACCAGCAACCCCTAGCACCGCGCCAATGCCCTGGA
AGATTGTCGCCCACTTCTTACCGAGCTCCTCTCCACTGCTCGTGCCCGGA
CCCGTGTGGGCTGTCGAGGAGAAGCCCCCCCGCAGCACGCGTCCCTTTCC
TGTTGGGTGTGTATGGATGTGCGTGTGCGTGAACACCTTGATGCGGGCCC
TTGTCCGCATAACAAAGATTGCAACGCAAACGACACAGACACGCAGACAA
AGGGGGAATCAACATGCCTCGGCCAGACTGCGGTCGCGTGCACTGAACGC
GCACTCCCACCCCATCAACAAGCCCGAGTTCTTCCTAAATGCATCACACA
CGCCACCTCACCTGGCCCGGGAAGCGTGCTCCCTCTCCGTGCCATGGCCC
CAGCCTTCGCCGTGAAGCGCCGAAGCATGTTGTCCCCCTGGTGGTCGTGG
TTGATGATGGCAGCAAGCAGCGAGGCAAGCATGCAAGCGGTGCATGTTGT
TGTGGTGTAGTGGTGGGAGGGAGGGAAGGGGAATGAGGCAGTGTTTGAGG
TCGGTTTCCAAGCCGCCCTAAATACAACTAACAAGCTCTTCAGAACCAAA
CTCGTTACGCCGTCAGCGTCAAACCCTCCCCCTCCGCATCCTAGACCACA
GGTTGGTGGCGGTGCGGGTGCCCCTGGCTTGCCAAAGGGCAAGACCAAAA
GGGGATGGGGGACAAGAAGAGGCTTGCTTGATGATGATGATGCATGGAAG
GCACACACAGAGCACACCCACCACACAGACGCCAGCCACAGACGCCAGGA
CCATGTAGAGGGTGCGACGTGACAAACCTCTACGGATGGGGTGGTGGTGG
CTGGTATTGAGTGTGGTGCTGCGCACAAGACTGGGCCTAGGGAGAGACAT
GCTAGACTGGCTGCTGGCTGCTGGGCGGGGGTCCACAAAGCTTGTTGAGC
CTCCTTACGTGCCGCCTTTCTAAGTAGTATGTGTGTATATTACGCAAACA
GGCCTTGGTGCTGGCACTATTAACAACACCACACCGCCTCTAGCACGCCC
CTCCGTGCCTTTCTTCCGGGGTCCAAAGCTTCCGCTACAATTCATTGACT
CATACCATGACTTCCTCCCTCCTTCCCACCGTGTCTGCCCCTTCCTTCGA
CGGGTCGCCTCGGTCTGCTGCCGTCAAGCGGCAGGGGCTTGGTTGGACAA
GTCGAAAGCAGGGTCGGCGGCGTTAGTGTGGGGGAGATGGATATGAGCCA
GTGCATCAAATCATAAAAGACAAAGGAAAAACTCGCTCGATACAAGTTGT
GGGGAGCCCTCGTTATTACGTTTCTCGTGTATGAGTCCTATCCCCCTCCT
GCCCATCTCTCTACTGCACAACCCCGTCCACTGTACATGTCTTTGAATGT
GTCTTTCTACATGGTTTCTATTTATATTAAGGTAGGACCCCGAATCCTAA
TTCTCCTCTTCCTTCTCCTCCAATCCGCCGGTTCCTCCCCTCTTTTTACG
TTTGTCCACAAGCGCGGCCTGATAAGGCTCATAGTCTTGAGTGTAAGCCA
GTTGGATCTCGCGCTTGAACCGCTCCACCTCCGCCTTCCAAAACACTTCC
GACATTGTCCGCTTGTCCTCCAAACGCGCGATCTCCGCCGCCGCCTTGTC
CTCCACACGCGCGATCTCCGCTTTCGCCTGCGCGATCTCCGCCGCCGCCT
TGTCCTCCACACGCGCCATCTCCGTCGCCGCCTTGCTCTCGATGTGCCTG
ATCTCCGTCTGGTCGAAAGTACGCACGACCACAGCGGTAGCACCAGCAAC
CCCTAGCACCGCGCCAATGCCCTGGAAGATTGTCGCCCACTTCTTACCGA
GCTCCTCTCCACTGCTCGTGCCCGGACCCGTGTGGGCTGTCGAGGAGAAG
CCCCCCCGCAGCACGCGTCCCTTTCCTGTTGGGTGTGTATGGATGTGCGT
GTGCGTGAACACCTTGACGTGGGCCCTTGTCCGCATAACAAAGATTGCAA
CGCAAACGACACAGACACGCAGACAAAGGGGGAATCAACATGCCTCGGCC
AGACTGCGGTCGCGTGCACTGAACGCGCACTCCCACCCCATCAACAAGCC
CGAGTTCTTCCTAAATGCATCACACACGCCACCTCACCTGGCCCGGGAAG
CGTGCTCCCTCTCCGTGCCATGGCCCCAGCCTTCGCCGTGAAGCGCCGAA
GCATGTTGTCCCCCTGGTGGTCGTGGTTGATGATGGCAGCAAGCAGCGAG
GCAAGCATGCAAGCGGTGCATGTTGTTGTGGTGTAGTGGTGGGAGGGAGG
GAAGGGGAATGAGGCAGTGTTTGAGGTCGGTTTCCAAGCCGCCCTAAATA
CAACTAACAAGCTCTTCAGAACCAAACTCGTTACGCCGTCAGCGTCAAAC
CCTCCCCCTCCGCATCCTAGACCACAGGTTGGTGGCGGTGCGGGTGCCCC
TGGCTTGCCAAAGGGCAAGACCAAAAGGGGATGGGGGACAAGAAGAGGCT
TGCTTGATGATGATGATGCATGGAAGGCACACACAGAGCACACCCACCAC
ACAGACGCCAGCCACAGACGCCAGGACCATGTAGAGGGTGCGACGTGACA
AACCTCTACGGATGGGGTGGTGGTGGCTGGTATTGAGTGTGGTGCTGTGC
ACAAGACTGGGCCTAGGGAGACATGCTAGACTGGCTGCTGGCTGCTGGGC
GGGGGTCCACAAAGCTTGTTGAGCCTCCTTACGTGCCGCCTTTCTAAGTA
GTATGTGTGTATATTACGCAAACAGGCCTTGGTGCTGGCACTATTAACAA
CACCACACCGCCTCTAGCACGCCCCTCCGTGCCTTTCTTCCGGGGTCCAA
AGCTTCCGCTACAATTCATTGACTCATACCATGACTTCCTCCCTCCTTCC
CACCGTGTCTGCCCCCTCCTTCGACGGGTCGCCTCGGTCTGCTGCCGTCA
AGCGCAGGGGCTTGGTTGGACAAGTCGAAAGCAGGGTCGGCGGCGTTAGT
GTGGGGGAGATGGATATGAGCCAGTGCATCAAATCATCAAAGACAAAGGA
AAAACTCGCTTGATACAAGTTGTGGGGAGCCCTCGTTATTACGTTTCTCG
TGTATGAGTCCTATCCCCCTCCTGCCCATCTCTCTACTGCACAACCCCGT
CCACTGTACATGTCTTTGAATGTGTCTTTCTACATGGTTTCTATTTATAT
TAAGGTAGGGCCCCGAATCCTAATTCTCCTCTTCCTTCTCCTCCAATCCG
CCGGTTCCTCCCCTCTTTTTACGTTTGTCCACAAGCGCGGCCTGATAAGG
CTCATAGTCTTGAGTGTAAGCCAGTTGGATCTCGCGCTTGAACCGCTCCA
CCTCCGCCTTCCAAAACACTTCCGACATTGTCCGCTTGTCCTCCACACGC
GCGATCTCCGCCGCCGACTTGTCCTCCACACGCGCGATCTCCGCTTTCGC
CTGCGCGATCTCCGCCGCCGCCTTGTCCTCCACACGCGCGATCTCCGCTT
TCGCCTGCGCGATCTCCGCTTTCGCCTGCGCGATCTCCGCCGCCGCCTTG
CTCTGGACATACTTGATCTCCGTCGCCATCTCAGTCTGGTCGAAAGTACG
CACGACCACAGCGGTAGCACCAGCAACCCCTAGCACCGCGCCAATGCCCT
GGAAGATTGTCGCCCACTTCTTACCGAGCTCCTCTCCACTGCTCGTGCCC
GGACCCGTGTGGGCTGTCGAGGAGAAGCCCCCCCGCAGCACGCGTCCCTT
TCCTGTTGGGTGTGTATGGATGTGCGTGTGCGTGAACACCTTGACGCGGG
CCCTTGTCCGCATAACAAAGATTGCAACGCAAACGACACAGACACGCAGA
CAAAGGGGGGATCAACATGCCTCGGCCAGACTGCGGTCGCGTGCACTGAA
CGCGCACTCCCACCCCATCAACAAGCCCAAGTTCTTCCTAAATGCATCAC
ACACGCCACCTCACCTGGCCCGGGAAGCGTGCTCCCTCTCCGTGCCATGG
CCCCAGCCTTCGCCGTGAAGCGCCGAAGCATGTTGTCCCCCTGGTGGTCG
TGGTTGATGATGGCAGCAAGCAGCGAGGCAAGCATGCAAGCGGTGCATAT
TGTTGTGGTGTAGTGGTGGGAGGGAGGGAAGGGGAATGAGGCAGTGTTTG
AGGTCGG back to topCoding sequence (CDS) from alignment at scaffold_5:1183233..1189089+ >mRNA_2786 ID=mRNA_2786|Name=jgi.p|Nanoce1779_2|581572|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_5:1183233..1189089+ (Nannochloropsis oceanica)
ATGCCTTGGAAGATTGTCGCCCACTTCTTACCGAGCTCCTCTCCACTGCT
CGTGCCCGGCCCCGTGTGGGCTGTCGAGGAGAAGCCCCCCCGCAGCACGC
GTCCCTTTCCTGGCCCGGGAAGCGTGCTCCCTCTCCGTGCCATGGCCCCA
GCCTTCGCCGTGAAGCGCCGAAGCATGTTGTCCCCCTGGTGGTCGTGGTT
GATGATGGCAGCAAGCAGCGAGGCAAGCATGCAAGCGGTGCATATTGTTG
TGGTGTAGATGCCTTGGAAGATTGTCGCCCACTTCTTACCGAGCTCCTCT
CCACTGCTCGTGCCCGGCCCCGTGTGGGCTGTCGAGGAGAAGCCCCCCCG
CAGCACGCGTCCCTTTCCTGGCCCGGGAAGCGTGCTCCCTCTCCGTGCCA
TGGCCCCAGCCTTCGCCGTGAAGCGCCGAAGCATGTTGTCCCCCTGGTGG
TCGTGGTTGATGATGGCAGCAAGCAGCGAGGCAAGCATGCAAGCGGTGCA
TATTGTTGTGGTGTAG back to top
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