Properties
| Property Name | Value |
|---|
| TranscriptId | 582049 |
| Track | FilteredModels2 |
| ProteinId | 581963 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:192116..194064 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3388 ID=mRNA_3388|Name=jgi.p|Nanoce1779_2|581963|organism=Nannochloropsis oceanica|type=mRNA|length=796bp
ACAGTCAAAGCCATGTCGGGGGACTCCGCCTATAGTTTTTCCCTTACTAC
ATTCTCCCGCACGGGCAAGCTTCTCCAAATTGAGTACGCCCTCAGCGCGG
CGCAGCAAGGCAAAACGTCCTTGGGCATCCGTGCTACGAACGGTGTGGTC
ATCGCCACCGAGAAGAAGCTTCCCTCCGTCCTCATCGATGAGTCCTATGT
GCAAAAAGTTGAGCTCATAAATCCCTCCACGGGCTTTGTATTCTCGGGCT
TGGGGCCTGACTACCGGGTGCTTGTCCGCAAAAGCCGCAAGCGCGCTCAG
TCCTACTACCTCCAGTACCGGGAGCAACAACCTGTCGGTCAGCTCGTTCG
AGATACCGCGGGCGTCATGCAGGAATTTACGCAGTCTGGTGGTGTGCGTC
CCTTCGGCTTGTCCTTGCTAGTAGCCGGCTATGATGACAACGGACCCCAG
CTCTTCCAGGTGGACCCTTCAGGCGCCTACTTCGGGTGGAAGGCCACGGC
TATCGGGAAAAACCATGTGAACGCCAAGAACTTTCTAGAAAAACGCTACA
ACGAGGAGATGGAGCTGGACGACGCGGTCCACACGGCCCTGCTCACGTTG
CGCGAAGGCTTCGAAGGGGAAATGAACGAGCACAACATTGAGATCGGCAT
CATAGGCGCCGACCGGAAGTTTACCATCCTTACGCCCGCCCAGGTCAGAG
ACTACCTCGACGAGGCCAATTAGTAGAAGAGGAAGGGGGGGGCGGGGGAA
GGAAGGAGGGAGCGAGGGAGGGAGCGAGGGAAGAAATGATGTGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|581963 >mRNA_3388-protein ID=mRNA_3388-protein|Name=jgi.p|Nanoce1779_2|581963|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MSGDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATE
KKLPSVLIDESYVQKVELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYYL
QYREQQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQV
DPSGAYFGWKATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGF
EGEMNEHNIEIGIIGADRKFTILTPAQVRDYLDEAN* back to topmRNA from alignment at scaffold_6:192116..194064- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3388 ID=mRNA_3388|Name=jgi.p|Nanoce1779_2|581963|organism=Nannochloropsis oceanica|type=mRNA|length=1949bp|location=Sequence derived from alignment at scaffold_6:192116..194064- (Nannochloropsis oceanica)
ACAGTCAAAGCCATGTCGGGGGACTCCGCCTATAGTTTTTCCCTTACTAC
ATTCTCCCGCACGGGCAAGCTTCTCCAAATTGAGTACGCCCTCAGCGCGG
CGCAGCAAGGCAAAACGTCCTTGGGCATCCGTGGTACGTTTTACGATATG
GACATTGAATATTTGGACTCAGAAAGACAGTGAAGTAGGGTCTGTATGTA
CTGTGTGGCGGGTGGGCGCGATTCAATCAGGAAGAGCATACGCATAGGGT
AGACAGTCATCGTCATACTCCATATGCTTGCTTCCCTGGCACCCTACTTT
CCCTTGACGCTCATGAAATCAAATTTATTGCATGCCTACATGACTGAGGC
TAAGACTGTGTTTGTATAGAAGCTGTATCTCTTTTTCTGCCGGCGCAGGC
ACCAGTCAAGTCAAGGTTTTTCCTTCCCTCCCTTCCCCTCCCCATGTAGC
TACGAACGGTGTGGTCATCGCCACCGAGAAGAAGCTTCCCTCCGTCCTCA
TCGATGAGTCCTATGTGCAAAAAGTTGAGCTCATAAATCCCTCCACGGGC
TTTGTATTCTCGGGCTTGGGGCCTGACTACCGGGTGCTTGTCCGCAAAAG
CCGCAAGGTATGGAGGGAGGGAGGGAGGGAGGGTGTCTGACTGGATGCAT
GTAATCATCGAGCCGTTATTGAGATATTTTTTCATCGTACCTTCGGTTGT
TGTATGTGTTGGTGGCGCGGCTGGTCGCTGGGTGTCACCGTGGTGGTGCT
ATTGAAGCCCCTAAGCTGTCTCACGCAATTAATTTTTCATTCCCTCACTC
ACACACTCCCTCCTCATTCCCTCCCTCCATCCGTCCCCCCAGCGCGCTCA
GTCCTACTACCTCCAGTACCGGGAGCAACAACCTGTCGGTCAGCTCGTTC
GAGATACCGCGGGCGTCATGCAGGTACCCTCCCTCCCGCCGTCCCTCTCG
CCCTCCCTCCCTCCATCCGCTCCCTCCACCCGCTCATTCCTTTTCTTGTC
TTCCTCATCGCTCCCTCTCTCTCTCCTTCCCTCACCGCCGCACAGGAATT
TACGCAGTCTGGTGGTGTGCGTCCCTTCGGCTTGTCCTTGCTAGTAGCCG
GCTATGATGACAACGGACCCCAGCTCTTCCAGGTACGGAGGGAGGGAGAG
GGAGGGAGGGACCGTGAAGAAGAATCAGGTGGCATTTGCGAGATTTAGTG
AGCGTCTTTGACAGCATACCAATCAGAGTCGTTCAGACCCCTCTTTCCCT
CCCTGCCTTTCTCCCTCCCTCCCCGGTTTGTTCATGCACAGCGAGCGTCT
TTGATACAAGTGGACGGATGATTAAACCCCTCCTTCCCTCCCTCCCTCCC
TCTCTCCCTCTCTCTAGGTGGACCCTTCAGGCGCCTACTTCGGGTGGAAG
GCCACGGCTATCGGGAAAAACCATGTGAACGCCAAGAACTTTCTAGAAAA
ACGCTACAACGAGGAGATGGAGCTGGACGACGCGGTCCACACGGCCCTGC
TCACGTTGCGCGAAGGCTTCGAAGGGTACGTTCCTCCCTGTCTGCCTTCT
CCTGTGTGTACATGCCTTGCTGCATGTGCGTGGCTTTCCTTTTTACTTCT
TCTTTCCTCTCTCCCTCTTTTTTATTCCCTTTTCAACCTCCCTCGCGCTG
CGCCGGTGGTTGTTGAAGGCAACGATGCTGACAGTCAGTCGCAGCAATTA
CCAGACAATCGGATGCATGTCCATAACTTCCTTCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCACAGGGAAATGAACGAGCACAACATTGAGATCGG
CATCATAGGCGCCGACCGGAAGTTTACCATCCTTACGCCCGCCCAGGTCA
GAGACTACCTCGACGAGGCCAATTAGTAGAAGAGGAAGGGGGGGGCGGGG
GAAGGAAGGAGGGAGCGAGGGAGGGAGCGAGGGAAGAAATGATGTGGAG back to topCoding sequence (CDS) from alignment at scaffold_6:192116..194064- >mRNA_3388 ID=mRNA_3388|Name=jgi.p|Nanoce1779_2|581963|organism=Nannochloropsis oceanica|type=CDS|length=4266bp|location=Sequence derived from alignment at scaffold_6:192116..194064- (Nannochloropsis oceanica)
GGAAATGAACGAGCACAACATTGAGATCGGCATCATAGGCGCCGACCGGA
AGTTTACCATCCTTACGCCCGCCCAGGTCAGAGACTACCTCGACGAGGCC
AATTAGGTGGACCCTTCAGGCGCCTACTTCGGGTGGAAGGCCACGGCTAT
CGGGAAAAACCATGTGAACGCCAAGAACTTTCTAGAAAAACGCTACAACG
AGGAGATGGAGCTGGACGACGCGGTCCACACGGCCCTGCTCACGTTGCGC
GAAGGCTTCGAAGGGAATTTACGCAGTCTGGTGGTGTGCGTCCCTTCGGC
TTGTCCTTGCTAGTAGCCGGCTATGATGACAACGGACCCCAGCTCTTCCA
GCGCGCTCAGTCCTACTACCTCCAGTACCGGGAGCAACAACCTGTCGGTC
AGCTCGTTCGAGATACCGCGGGCGTCATGCAGCTACGAACGGTGTGGTCA
TCGCCACCGAGAAGAAGCTTCCCTCCGTCCTCATCGATGAGTCCTATGTG
CAAAAAGTTGAGCTCATAAATCCCTCCACGGGCTTTGTATTCTCGGGCTT
GGGGCCTGACTACCGGGTGCTTGTCCGCAAAAGCCGCAAGATGTCGGGGG
ACTCCGCCTATAGTTTTTCCCTTACTACATTCTCCCGCACGGGCAAGCTT
CTCCAAATTGAGTACGCCCTCAGCGCGGCGCAGCAAGGCAAAACGTCCTT
GGGCATCCGTGGGAAATGAACGAGCACAACATTGAGATCGGCATCATAGG
CGCCGACCGGAAGTTTACCATCCTTACGCCCGCCCAGGTCAGAGACTACC
TCGACGAGGCCAATTAGGTGGACCCTTCAGGCGCCTACTTCGGGTGGAAG
GCCACGGCTATCGGGAAAAACCATGTGAACGCCAAGAACTTTCTAGAAAA
ACGCTACAACGAGGAGATGGAGCTGGACGACGCGGTCCACACGGCCCTGC
TCACGTTGCGCGAAGGCTTCGAAGGGAATTTACGCAGTCTGGTGGTGTGC
GTCCCTTCGGCTTGTCCTTGCTAGTAGCCGGCTATGATGACAACGGACCC
CAGCTCTTCCAGCGCGCTCAGTCCTACTACCTCCAGTACCGGGAGCAACA
ACCTGTCGGTCAGCTCGTTCGAGATACCGCGGGCGTCATGCAGCTACGAA
CGGTGTGGTCATCGCCACCGAGAAGAAGCTTCCCTCCGTCCTCATCGATG
AGTCCTATGTGCAAAAAGTTGAGCTCATAAATCCCTCCACGGGCTTTGTA
TTCTCGGGCTTGGGGCCTGACTACCGGGTGCTTGTCCGCAAAAGCCGCAA
GATGTCGGGGGACTCCGCCTATAGTTTTTCCCTTACTACATTCTCCCGCA
CGGGCAAGCTTCTCCAAATTGAGTACGCCCTCAGCGCGGCGCAGCAAGGC
AAAACGTCCTTGGGCATCCGTGGGAAATGAACGAGCACAACATTGAGATC
GGCATCATAGGCGCCGACCGGAAGTTTACCATCCTTACGCCCGCCCAGGT
CAGAGACTACCTCGACGAGGCCAATTAGGTGGACCCTTCAGGCGCCTACT
TCGGGTGGAAGGCCACGGCTATCGGGAAAAACCATGTGAACGCCAAGAAC
TTTCTAGAAAAACGCTACAACGAGGAGATGGAGCTGGACGACGCGGTCCA
CACGGCCCTGCTCACGTTGCGCGAAGGCTTCGAAGGGAATTTACGCAGTC
TGGTGGTGTGCGTCCCTTCGGCTTGTCCTTGCTAGTAGCCGGCTATGATG
ACAACGGACCCCAGCTCTTCCAGCGCGCTCAGTCCTACTACCTCCAGTAC
CGGGAGCAACAACCTGTCGGTCAGCTCGTTCGAGATACCGCGGGCGTCAT
GCAGCTACGAACGGTGTGGTCATCGCCACCGAGAAGAAGCTTCCCTCCGT
CCTCATCGATGAGTCCTATGTGCAAAAAGTTGAGCTCATAAATCCCTCCA
CGGGCTTTGTATTCTCGGGCTTGGGGCCTGACTACCGGGTGCTTGTCCGC
AAAAGCCGCAAGATGTCGGGGGACTCCGCCTATAGTTTTTCCCTTACTAC
ATTCTCCCGCACGGGCAAGCTTCTCCAAATTGAGTACGCCCTCAGCGCGG
CGCAGCAAGGCAAAACGTCCTTGGGCATCCGTGGGAAATGAACGAGCACA
ACATTGAGATCGGCATCATAGGCGCCGACCGGAAGTTTACCATCCTTACG
CCCGCCCAGGTCAGAGACTACCTCGACGAGGCCAATTAGGTGGACCCTTC
AGGCGCCTACTTCGGGTGGAAGGCCACGGCTATCGGGAAAAACCATGTGA
ACGCCAAGAACTTTCTAGAAAAACGCTACAACGAGGAGATGGAGCTGGAC
GACGCGGTCCACACGGCCCTGCTCACGTTGCGCGAAGGCTTCGAAGGGAA
TTTACGCAGTCTGGTGGTGTGCGTCCCTTCGGCTTGTCCTTGCTAGTAGC
CGGCTATGATGACAACGGACCCCAGCTCTTCCAGCGCGCTCAGTCCTACT
ACCTCCAGTACCGGGAGCAACAACCTGTCGGTCAGCTCGTTCGAGATACC
GCGGGCGTCATGCAGCTACGAACGGTGTGGTCATCGCCACCGAGAAGAAG
CTTCCCTCCGTCCTCATCGATGAGTCCTATGTGCAAAAAGTTGAGCTCAT
AAATCCCTCCACGGGCTTTGTATTCTCGGGCTTGGGGCCTGACTACCGGG
TGCTTGTCCGCAAAAGCCGCAAGATGTCGGGGGACTCCGCCTATAGTTTT
TCCCTTACTACATTCTCCCGCACGGGCAAGCTTCTCCAAATTGAGTACGC
CCTCAGCGCGGCGCAGCAAGGCAAAACGTCCTTGGGCATCCGTGGGAAAT
GAACGAGCACAACATTGAGATCGGCATCATAGGCGCCGACCGGAAGTTTA
CCATCCTTACGCCCGCCCAGGTCAGAGACTACCTCGACGAGGCCAATTAG
GTGGACCCTTCAGGCGCCTACTTCGGGTGGAAGGCCACGGCTATCGGGAA
AAACCATGTGAACGCCAAGAACTTTCTAGAAAAACGCTACAACGAGGAGA
TGGAGCTGGACGACGCGGTCCACACGGCCCTGCTCACGTTGCGCGAAGGC
TTCGAAGGGAATTTACGCAGTCTGGTGGTGTGCGTCCCTTCGGCTTGTCC
TTGCTAGTAGCCGGCTATGATGACAACGGACCCCAGCTCTTCCAGCGCGC
TCAGTCCTACTACCTCCAGTACCGGGAGCAACAACCTGTCGGTCAGCTCG
TTCGAGATACCGCGGGCGTCATGCAGCTACGAACGGTGTGGTCATCGCCA
CCGAGAAGAAGCTTCCCTCCGTCCTCATCGATGAGTCCTATGTGCAAAAA
GTTGAGCTCATAAATCCCTCCACGGGCTTTGTATTCTCGGGCTTGGGGCC
TGACTACCGGGTGCTTGTCCGCAAAAGCCGCAAGATGTCGGGGGACTCCG
CCTATAGTTTTTCCCTTACTACATTCTCCCGCACGGGCAAGCTTCTCCAA
ATTGAGTACGCCCTCAGCGCGGCGCAGCAAGGCAAAACGTCCTTGGGCAT
CCGTGGGAAATGAACGAGCACAACATTGAGATCGGCATCATAGGCGCCGA
CCGGAAGTTTACCATCCTTACGCCCGCCCAGGTCAGAGACTACCTCGACG
AGGCCAATTAGGTGGACCCTTCAGGCGCCTACTTCGGGTGGAAGGCCACG
GCTATCGGGAAAAACCATGTGAACGCCAAGAACTTTCTAGAAAAACGCTA
CAACGAGGAGATGGAGCTGGACGACGCGGTCCACACGGCCCTGCTCACGT
TGCGCGAAGGCTTCGAAGGGAATTTACGCAGTCTGGTGGTGTGCGTCCCT
TCGGCTTGTCCTTGCTAGTAGCCGGCTATGATGACAACGGACCCCAGCTC
TTCCAGCGCGCTCAGTCCTACTACCTCCAGTACCGGGAGCAACAACCTGT
CGGTCAGCTCGTTCGAGATACCGCGGGCGTCATGCAGCTACGAACGGTGT
GGTCATCGCCACCGAGAAGAAGCTTCCCTCCGTCCTCATCGATGAGTCCT
ATGTGCAAAAAGTTGAGCTCATAAATCCCTCCACGGGCTTTGTATTCTCG
GGCTTGGGGCCTGACTACCGGGTGCTTGTCCGCAAAAGCCGCAAGATGTC
GGGGGACTCCGCCTATAGTTTTTCCCTTACTACATTCTCCCGCACGGGCA
AGCTTCTCCAAATTGAGTACGCCCTCAGCGCGGCGCAGCAAGGCAAAACG
TCCTTGGGCATCCGTG back to top
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