jgi.p|Nanoce1779_2|525561, mRNA_3505 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525561
Unique NamemRNA_3505
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1266
Alignment locationscaffold_6:527791..529290 -

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Properties
Property NameValue
TranscriptId525647
TrackFilteredModels2
ProteinId525561
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:527791..529290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525561gene_3505Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525561mRNA_3505-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3505CDS_3505Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3505 ID=mRNA_3505|Name=jgi.p|Nanoce1779_2|525561|organism=Nannochloropsis oceanica|type=mRNA|length=1266bp
ATGCGGCCCCTCTTGAGCTCGCATGTCCTCCTTCCTGTCCTGCTCTTGGT
GCTACCAGGTTTGGTGACTGCTGTGCACGAAGCGCATGTATGCTTGGATC
ATAACCATGCACGAGGGTCCTCTGACACTGCTTGCGCATCTCAGAACTCC
CACCAACACGAGCGCCCTCCCACTTCACACTCGTCGCCTCCGGAAGTCGC
CTCCGGACTGTGGATCCACAAGCATCTTCCCAAAGGGGAATGGGCGAAAG
CCTTTGGTGCTACCGGTATCATAAGCATCTTTCCCACTCTAGTGCTTCCC
TTTGTCCCCCTCACCCACTCCGTCAATGGCATCATCTCCTTGAATGAGGG
CATGCATAAACTTTTGCTCAGTTTCGCCGCTGGAGGCCTGCTTGGCGAGG
TATTCTTGCATTCCTTGCCGCATTTGCTCGAGCACCACGACCATTTCAGT
AGTAGCAGCAGCAATAGCACAAGTAGTCGCGACCAGTACCAAGAGCACGC
GGAGAACGAGGAGGACGCGCACGACGACCATAGGCACTCGCATGCACACG
GCAGCGGCGTGAGATTGGATGAGGGGGAGGTTATGCGGATTTGTATGTGG
ATTTTGGCGGGCTTCCTTCTCTTCTTTGTATCGGAGAAGGTAGTCACAGT
TATCCTGGGCGATGATGGAGGGCATTCACACAGCGACAGTTACAGACACT
CACACACTCATTCTCACGCCGCTCATGGCAAAAAATCAAAGTCAAGCGCT
GCATCAAGCGAAGATGAAGAAGAGGAGGAAGAAGACGGAGGGTTGAAGGC
AAGCGGGTACCTCAACATCGTGGTTGATGTGCTGCACAATCTCACAGACG
GCATCGCCATCGGTGCCTCGTTTGCCTCGGGTCAAGGGGTTGGATTAGCC
ACCACCCTATCAGTGTTTCTCCATGAGGTCCCGCACGAGATAGGAGATTT
TGCTATTTTGGTTCAATCTGGTCTGAGTGTACGGAATGCTTTCTTGATGC
AATTTTTTACTGCTATTGCTGCTTTCCTCGGTACATTTTTGGGATTAGTG
GCCAAGAGACAGTTAGGATTGGAGCGGATATTGCTGGCGCTGACGACGGG
AGGTTTTTTGTATGTGGCGTGTGTGTCGGTGTTGCCGGAGTTGCTGGCAG
GGGAAGGGAAGGGAAGAAGAAAGGGAGGGCAGGCGGTGAGGGAGGTGGGA
GGGGTGGTGGCTGGAATAGGGCTGATGGCTTGGGTGGCGATGGGCGAGCA
CGGGCATGAACATTGA
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protein sequence of jgi.p|Nanoce1779_2|525561

>mRNA_3505-protein ID=mRNA_3505-protein|Name=jgi.p|Nanoce1779_2|525561|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MRPLLSSHVLLPVLLLVLPGLVTAVHEAHVCLDHNHARGSSDTACASQNS
HQHERPPTSHSSPPEVASGLWIHKHLPKGEWAKAFGATGIISIFPTLVLP
FVPLTHSVNGIISLNEGMHKLLLSFAAGGLLGEVFLHSLPHLLEHHDHFS
SSSSNSTSSRDQYQEHAENEEDAHDDHRHSHAHGSGVRLDEGEVMRICMW
ILAGFLLFFVSEKVVTVILGDDGGHSHSDSYRHSHTHSHAAHGKKSKSSA
ASSEDEEEEEEDGGLKASGYLNIVVDVLHNLTDGIAIGASFASGQGVGLA
TTLSVFLHEVPHEIGDFAILVQSGLSVRNAFLMQFFTAIAAFLGTFLGLV
AKRQLGLERILLALTTGGFLYVACVSVLPELLAGEGKGRRKGGQAVREVG
GVVAGIGLMAWVAMGEHGHEH*
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mRNA from alignment at scaffold_6:527791..529290-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3505 ID=mRNA_3505|Name=jgi.p|Nanoce1779_2|525561|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp|location=Sequence derived from alignment at scaffold_6:527791..529290- (Nannochloropsis oceanica)
ATGCGGCCCCTCTTGAGCTCGCATGTCCTCCTTCCTGTCCTGCTCTTGGT
GCTACCAGGTTTGGTGACTGCTGTGCACGAAGCGCATGTATGCTTGGATC
ATAACCATGCACGAGGGTCCTCTGACACTGCTTGCGCATCTCAGAACTCC
CACCAACACGAGCGCCCTCCCACTTCACACTCGTCGCCTCCGGAAGTCGC
CTCCGGACTGTGGATCCACAAGCATCTTCCCAAAGGGGAATGGGCGAAAG
CCTTTGGTGCTACCGGTATCATAAGCATCTTTCCCACTCTAGTGCTTCCC
TTTGTCCCCCTCACCCACTCCGTCAATGGCATCATCTCCTTGAATGAGGG
CATGCATAAACTTTTGCTCAGTTTCGCCGCTGGAGGCCTGCTTGGCGAGG
TATTCTTGCATTCCTTGCCGCATTTGCTCGAGCACCACGACCATTTCAGT
AGTAGCAGCAGCAATAGCACAAGTAGTCGCGACCAGTACCAAGAGCACGC
GGAGAACGAGGAGGACGCGCACGACGACCATAGGCACTCGCATGCACACG
GCAGCGGCGTGAGATTGGATGAGGGGGAGGTTATGCGGATTTGTATGTGG
ATTTTGGCGGGCTTCCTTCTCTTCTTTGTATCGGAGAAGGTAGTCACAGT
TATCCTGGGCGATGATGGAGGGCATTCACACAGCGACAGTTACAGACACT
CACACACTCATTCTCACGCCGCTCATGGCAAAAAATCAAAGTCAAGCGCT
GCATCAAGCGAAGATGAAGAAGAGGAGGAAGAAGACGTAGAGGGAGAGGA
AGGAGAGGAGGACTTCTCAATTGACTCTGAAGGTCGGCGCCGGCGAAGCC
CCCGCATCCGAGAGCGGTACTCACGCCCTGAACGAAGGCAAATAGCAACA
GTAGCAGCAGCAACAGCAGCGGGGGGTCGTACCAACGGCGGAATTCACCG
GCGACAGCTTTCTTCTTCATCACCGAACAAAGGGCAGCAGCGGCATGTGA
CCGTAGCAACAGGAGGAGAGGGAGGGTTGAAGGCAAGCGGGTACCTCAAC
ATCGTGGTTGATGTGCTGCACAATCTCACAGACGGCATCGCCATCGGTGC
CTCGTTTGCCTCGGGTCAAGGGGTTGGATTAGCCACCACCCTATCAGTGT
TTCTCCATGAGGTCCCGCACGAGATAGGAGATTTTGCTATTTTGGTTCAA
TCTGGTCTGAGTGTACGGAATGCTTTCTTGATGCAATTTTTTACTGCTAT
TGCTGCTTTCCTCGGTACATTTTTGGGATTAGTGGCCAAGAGACAGTTAG
GATTGGAGCGGATATTGCTGGCGCTGACGACGGGAGGTTTTTTGTATGTG
GCGTGTGTGTCGGTGTTGCCGGAGTTGCTGGCAGGGGAAGGGAAGGGAAG
AAGAAAGGGAGGGCAGGCGGTGAGGGAGGTGGGAGGGGTGGTGGCTGGAA
TAGGGCTGATGGCTTGGGTGGCGATGGGCGAGCACGGGCATGAACATTGA
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Coding sequence (CDS) from alignment at scaffold_6:527791..529290-

>mRNA_3505 ID=mRNA_3505|Name=jgi.p|Nanoce1779_2|525561|organism=Nannochloropsis oceanica|type=CDS|length=2532bp|location=Sequence derived from alignment at scaffold_6:527791..529290- (Nannochloropsis oceanica)
GGAGGGTTGAAGGCAAGCGGGTACCTCAACATCGTGGTTGATGTGCTGCA
CAATCTCACAGACGGCATCGCCATCGGTGCCTCGTTTGCCTCGGGTCAAG
GGGTTGGATTAGCCACCACCCTATCAGTGTTTCTCCATGAGGTCCCGCAC
GAGATAGGAGATTTTGCTATTTTGGTTCAATCTGGTCTGAGTGTACGGAA
TGCTTTCTTGATGCAATTTTTTACTGCTATTGCTGCTTTCCTCGGTACAT
TTTTGGGATTAGTGGCCAAGAGACAGTTAGGATTGGAGCGGATATTGCTG
GCGCTGACGACGGGAGGTTTTTTGTATGTGGCGTGTGTGTCGGTGTTGCC
GGAGTTGCTGGCAGGGGAAGGGAAGGGAAGAAGAAAGGGAGGGCAGGCGG
TGAGGGAGGTGGGAGGGGTGGTGGCTGGAATAGGGCTGATGGCTTGGGTG
GCGATGGGCGAGCACGGGCATGAACATTGAATGCGGCCCCTCTTGAGCTC
GCATGTCCTCCTTCCTGTCCTGCTCTTGGTGCTACCAGGTTTGGTGACTG
CTGTGCACGAAGCGCATGTATGCTTGGATCATAACCATGCACGAGGGTCC
TCTGACACTGCTTGCGCATCTCAGAACTCCCACCAACACGAGCGCCCTCC
CACTTCACACTCGTCGCCTCCGGAAGTCGCCTCCGGACTGTGGATCCACA
AGCATCTTCCCAAAGGGGAATGGGCGAAAGCCTTTGGTGCTACCGGTATC
ATAAGCATCTTTCCCACTCTAGTGCTTCCCTTTGTCCCCCTCACCCACTC
CGTCAATGGCATCATCTCCTTGAATGAGGGCATGCATAAACTTTTGCTCA
GTTTCGCCGCTGGAGGCCTGCTTGGCGAGGTATTCTTGCATTCCTTGCCG
CATTTGCTCGAGCACCACGACCATTTCAGTAGTAGCAGCAGCAATAGCAC
AAGTAGTCGCGACCAGTACCAAGAGCACGCGGAGAACGAGGAGGACGCGC
ACGACGACCATAGGCACTCGCATGCACACGGCAGCGGCGTGAGATTGGAT
GAGGGGGAGGTTATGCGGATTTGTATGTGGATTTTGGCGGGCTTCCTTCT
CTTCTTTGTATCGGAGAAGGTAGTCACAGTTATCCTGGGCGATGATGGAG
GGCATTCACACAGCGACAGTTACAGACACTCACACACTCATTCTCACGCC
GCTCATGGCAAAAAATCAAAGTCAAGCGCTGCATCAAGCGAAGATGAAGA
AGAGGAGGAAGAAGACGGAGGGTTGAAGGCAAGCGGGTACCTCAACATCG
TGGTTGATGTGCTGCACAATCTCACAGACGGCATCGCCATCGGTGCCTCG
TTTGCCTCGGGTCAAGGGGTTGGATTAGCCACCACCCTATCAGTGTTTCT
CCATGAGGTCCCGCACGAGATAGGAGATTTTGCTATTTTGGTTCAATCTG
GTCTGAGTGTACGGAATGCTTTCTTGATGCAATTTTTTACTGCTATTGCT
GCTTTCCTCGGTACATTTTTGGGATTAGTGGCCAAGAGACAGTTAGGATT
GGAGCGGATATTGCTGGCGCTGACGACGGGAGGTTTTTTGTATGTGGCGT
GTGTGTCGGTGTTGCCGGAGTTGCTGGCAGGGGAAGGGAAGGGAAGAAGA
AAGGGAGGGCAGGCGGTGAGGGAGGTGGGAGGGGTGGTGGCTGGAATAGG
GCTGATGGCTTGGGTGGCGATGGGCGAGCACGGGCATGAACATTGAATGC
GGCCCCTCTTGAGCTCGCATGTCCTCCTTCCTGTCCTGCTCTTGGTGCTA
CCAGGTTTGGTGACTGCTGTGCACGAAGCGCATGTATGCTTGGATCATAA
CCATGCACGAGGGTCCTCTGACACTGCTTGCGCATCTCAGAACTCCCACC
AACACGAGCGCCCTCCCACTTCACACTCGTCGCCTCCGGAAGTCGCCTCC
GGACTGTGGATCCACAAGCATCTTCCCAAAGGGGAATGGGCGAAAGCCTT
TGGTGCTACCGGTATCATAAGCATCTTTCCCACTCTAGTGCTTCCCTTTG
TCCCCCTCACCCACTCCGTCAATGGCATCATCTCCTTGAATGAGGGCATG
CATAAACTTTTGCTCAGTTTCGCCGCTGGAGGCCTGCTTGGCGAGGTATT
CTTGCATTCCTTGCCGCATTTGCTCGAGCACCACGACCATTTCAGTAGTA
GCAGCAGCAATAGCACAAGTAGTCGCGACCAGTACCAAGAGCACGCGGAG
AACGAGGAGGACGCGCACGACGACCATAGGCACTCGCATGCACACGGCAG
CGGCGTGAGATTGGATGAGGGGGAGGTTATGCGGATTTGTATGTGGATTT
TGGCGGGCTTCCTTCTCTTCTTTGTATCGGAGAAGGTAGTCACAGTTATC
CTGGGCGATGATGGAGGGCATTCACACAGCGACAGTTACAGACACTCACA
CACTCATTCTCACGCCGCTCATGGCAAAAAATCAAAGTCAAGCGCTGCAT
CAAGCGAAGATGAAGAAGAGGAGGAAGAAGAC
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Synonyms
Publications