jgi.p|Nanoce1779_2|552717, mRNA_3377 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|552717
Unique NamemRNA_3377
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1550
Alignment locationscaffold_6:172600..174322 -

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Properties
Property NameValue
TranscriptId552803
TrackFilteredModels2
ProteinId552717
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:172600..174322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552717gene_3377Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552717mRNA_3377-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3377CDS_3377Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3377 ID=mRNA_3377|Name=jgi.p|Nanoce1779_2|552717|organism=Nannochloropsis oceanica|type=mRNA|length=1550bp
CGGGCAATATATGGAGTAAATAGAATGAGCTGGAATCAGAAGTGGAATAT
GCCTGTGGCGGTAGCTCGAAGAGCAAATGAGCTCAACCCATACTTTCCGA
TATGAAACTTGAACGACTCAGGAAATTCAGCTGTCCCACTCTCGCTTCGT
GAGACGAGGTGAGACATCTATAAAATTACCAAATCGCACCGCATTCTCTC
AGCACTTAAGCACTAGTACTTTCTCAACAGAACACGCTTCGGGCTTTTAC
TCGGAGTGTGGCACCCGAGATTGCGCTTGGGCTTGCACACGACCCTTATT
GGCGAACAATGCGAGGTCCAACCTCGCACACGTCATCGTCTCCTGATCGC
CTCACCTGCTGCGCCGCCGTGGCCATACACTTCCTTCCATCTGTTGTCAC
TCCCATGGATCGTCAGCAGTGATGAATTCCTGAGGGTACATGCTGTCCAC
GCCAGCTACGTCTTCTTGCTCGTCATGTTGTTGCTGTGGTCTCACTCCAT
ACACCAACACCTTCACTTCACTCCTCTTACCCCCTCCCGTACCCCCAACC
CACACCCACAGACAAATGGGACGTCTCATCCTCACGAGCGCGGCATTGGT
CGTTCTCGCGTTTCAGACTACCACTGTTGCCTTCCAACCTCGTGGCCGCC
TGCATATGATTTGGGGAGGGCAACGAACTAAAAAGCCCGTCGCCATTGGC
GGCCCCGTCAATGAGCCCAAACCTTTCAGCGTTCGCCCGGACAAGTTCCT
CGACGTCGCCACAGCCAGCACAGTCAGCTTGTTGCGTGCGGGCTCCGGGG
CATTCGTCCAGGGGTACAAGGTCGCACTCGTCGACACGGATCAAGTCGAA
GCAGGCGAATACACCTTTGTGTCCAGTGGGGGGAAACGCAGCAAGGAGAC
CAGTGCCACTTTCATCGCCCGCCCTAAGCAACCTATCATCCTTTACGAAT
TCCAAGGCTGCCCTTTCTGTGCGAAGGTCCGAGAAGTCGTCTCCATCTTG
GATCTCGACGTGTTGTTTTACCCCTGTCCGAGGGACAGCAAGGTGTTCCG
TCCGGAAGCCATCTCTCGAGGGGGCAAGTCGCAGTTCCCTTACATGGTGG
ACCCTAACACCAAAGTGGAAATGTACGAATCCGCAGACATAATCCAATAC
CTCGTCGACACGTACGGCACGGGAGAGACCCCCTCAGGTCTCGGAGCAGG
CACGGCGAACGTAGTCAAAATCAGCCTCGCTTTGCTCCCGCGCTTCGGAA
AAGGTAGCCGGGTGATTTCGGGTGGTTCCAAGGTCCCTTCGAAGCCTCTC
ATTTACTGGGGCTACGAGGCCTCTCCCTTCTGCAGGCTTGTCAAGGAAAA
ACTCAATGAATTAGAGCTTCCGCATGTCCAGAAATCGTGTGCCCGAGGCA
GTGCAAAACGCAAGGAGCTGCAGGCTCGTGCGGGGAAATTCCTTGTCCCA
TTTATTGAGGATCCTAATACTGGTGTGAGCATGTACGAGAGTGCGGAGAT
TATGGAGTACCTCGAAAAGACGTATGCGGCCTAGGGGGATGGGGAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|552717

>mRNA_3377-protein ID=mRNA_3377-protein|Name=jgi.p|Nanoce1779_2|552717|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MLSTPATSSCSSCCCCGLTPYTNTFTSLLLPPPVPPTHTHRQMGRLILTS
AALVVLAFQTTTVAFQPRGRLHMIWGGQRTKKPVAIGGPVNEPKPFSVRP
DKFLDVATASTVSLLRAGSGAFVQGYKVALVDTDQVEAGEYTFVSSGGKR
SKETSATFIARPKQPIILYEFQGCPFCAKVREVVSILDLDVLFYPCPRDS
KVFRPEAISRGGKSQFPYMVDPNTKVEMYESADIIQYLVDTYGTGETPSG
LGAGTANVVKISLALLPRFGKGSRVISGGSKVPSKPLIYWGYEASPFCRL
VKEKLNELELPHVQKSCARGSAKRKELQARAGKFLVPFIEDPNTGVSMYE
SAEIMEYLEKTYAA*
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mRNA from alignment at scaffold_6:172600..174322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3377 ID=mRNA_3377|Name=jgi.p|Nanoce1779_2|552717|organism=Nannochloropsis oceanica|type=mRNA|length=1723bp|location=Sequence derived from alignment at scaffold_6:172600..174322- (Nannochloropsis oceanica)
CGGGCAATATATGGAGTAAATAGAATGAGCTGGAATCAGAAGTGGAATAT
GCCTGTGGCGGTAGCTCGAAGAGCAAATGAGCTCAACCCATACTTTCCGA
TATGAAACTTGAACGACTCAGGAAATTCAGCTGTCCCACTCTCGCTTCGT
GAGACGAGGTGAGACATCTATAAAATTACCAAATCGCACCGCATTCTCTC
AGCACTTAAGCACTAGTACTTTCTCAACAGAACACGCTTCGGGCTTTTAC
TCGGAGTGTGGCACCCGAGATTGCGCTTGGGCTTGCACACGACCCTTATT
GGCGAACAATGCGAGGTCCAACCTCGCACACGTCATCGTCTCCTGATCGC
CTCACCTGCTGCGCCGCCGTGGCCATACACTTCCTTCCATCTGTTGTCAC
TCCCATGGATCGTCAGCAGTGATGAATTCCTGAGGGTACATGCTGTCCAC
GCCAGCTACGTCTTCTTGCTCGTCATGTTGTTGCTGTGGTCTCACTCCAT
ACACCAACACCTTCACTTCACTCCTCTTACCCCCTCCCGTACCCCCAACC
CACACCCACAGACAAATGGGACGTCTCATCCTCACGAGCGCGGCATTGGT
CGTTCTCGCGTTTCAGACTACCACTGTTGCCTTCCAACCTCGTGGCCGCC
TGCATATGATTTGGGGAGGGCAACGAACTAAAAAGCCCGTCGCCATTGGC
GGCCCCGTCAATGAGCCCAAACCTTTCAGCGTTCGCCCGGACAAGTTCCT
CGACGTCGCCACAGCCAGCACAGTCAGCTTGTTGCGTGCGGGCTCCGGGG
CATTCGTCCAGGGGTACAAGGTCGCACTCGTCGACACGGATCAAGTCGAA
GCAGGCGAATACACCTTTGTGTCCAGTGGGGGGAAACGCAGCAAGGAGAC
CAGTGCCACTTTCATCGCCCGCCCTAAGCAACCTATCATCCTTTACGAAT
TCCAAGGCTGCCCTTTCTGTGCGAAGGTCCGAGAAGTCGTCTCCATCTTG
GATCTCGACGTGTTGTTTTACCCCTGTCCGAGGGACAGCAAGGTGTTCCG
TCCGGAAGCCATCTCTCGAGGGGGCAAGTCGCAGTTCCCTTACATGGTGG
ACCCTAACACCAAAGTGGTGGGTGGAAGAAAAAGAGGAGGGGAAAGAGGG
AGGAGGGAGGGGAAAGCGATCGGAAACGACGCTCGATAGGGAGTGAAGGA
GGTGTTGTGTCCTCATGATGGTTTTAGCCTTAGTTCGTCTTTGTTCAAAC
GCACCTCCTCCCTCCTTCCCTCCCTCCCTCCTCCTCCTAGGAAATGTACG
AATCCGCAGACATAATCCAATACCTCGTCGACACGTACGGCACGGGAGAG
ACCCCCTCAGGTCTCGGAGCAGGCACGGCGAACGTAGTCAAAATCAGCCT
CGCTTTGCTCCCGCGCTTCGGAAAAGGTAGCCGGGTGATTTCGGGTGGTT
CCAAGGTCCCTTCGAAGCCTCTCATTTACTGGGGCTACGAGGCCTCTCCC
TTCTGCAGGCTTGTCAAGGAAAAACTCAATGAATTAGAGCTTCCGCATGT
CCAGAAATCGTGTGCCCGAGGCAGTGCAAAACGCAAGGAGCTGCAGGCTC
GTGCGGGGAAATTCCTTGTCCCATTTATTGAGGATCCTAATACTGGTGTG
AGCATGTACGAGAGTGCGGAGATTATGGAGTACCTCGAAAAGACGTATGC
GGCCTAGGGGGATGGGGAGGGAG
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Coding sequence (CDS) from alignment at scaffold_6:172600..174322-

>mRNA_3377 ID=mRNA_3377|Name=jgi.p|Nanoce1779_2|552717|organism=Nannochloropsis oceanica|type=CDS|length=2190bp|location=Sequence derived from alignment at scaffold_6:172600..174322- (Nannochloropsis oceanica)
GAAATGTACGAATCCGCAGACATAATCCAATACCTCGTCGACACGTACGG
CACGGGAGAGACCCCCTCAGGTCTCGGAGCAGGCACGGCGAACGTAGTCA
AAATCAGCCTCGCTTTGCTCCCGCGCTTCGGAAAAGGTAGCCGGGTGATT
TCGGGTGGTTCCAAGGTCCCTTCGAAGCCTCTCATTTACTGGGGCTACGA
GGCCTCTCCCTTCTGCAGGCTTGTCAAGGAAAAACTCAATGAATTAGAGC
TTCCGCATGTCCAGAAATCGTGTGCCCGAGGCAGTGCAAAACGCAAGGAG
CTGCAGGCTCGTGCGGGGAAATTCCTTGTCCCATTTATTGAGGATCCTAA
TACTGGTGTGAGCATGTACGAGAGTGCGGAGATTATGGAGTACCTCGAAA
AGACGTATGCGGCCTAGATGCTGTCCACGCCAGCTACGTCTTCTTGCTCG
TCATGTTGTTGCTGTGGTCTCACTCCATACACCAACACCTTCACTTCACT
CCTCTTACCCCCTCCCGTACCCCCAACCCACACCCACAGACAAATGGGAC
GTCTCATCCTCACGAGCGCGGCATTGGTCGTTCTCGCGTTTCAGACTACC
ACTGTTGCCTTCCAACCTCGTGGCCGCCTGCATATGATTTGGGGAGGGCA
ACGAACTAAAAAGCCCGTCGCCATTGGCGGCCCCGTCAATGAGCCCAAAC
CTTTCAGCGTTCGCCCGGACAAGTTCCTCGACGTCGCCACAGCCAGCACA
GTCAGCTTGTTGCGTGCGGGCTCCGGGGCATTCGTCCAGGGGTACAAGGT
CGCACTCGTCGACACGGATCAAGTCGAAGCAGGCGAATACACCTTTGTGT
CCAGTGGGGGGAAACGCAGCAAGGAGACCAGTGCCACTTTCATCGCCCGC
CCTAAGCAACCTATCATCCTTTACGAATTCCAAGGCTGCCCTTTCTGTGC
GAAGGTCCGAGAAGTCGTCTCCATCTTGGATCTCGACGTGTTGTTTTACC
CCTGTCCGAGGGACAGCAAGGTGTTCCGTCCGGAAGCCATCTCTCGAGGG
GGCAAGTCGCAGTTCCCTTACATGGTGGACCCTAACACCAAAGTGGAAAT
GTACGAATCCGCAGACATAATCCAATACCTCGTCGACACGTACGGCACGG
GAGAGACCCCCTCAGGTCTCGGAGCAGGCACGGCGAACGTAGTCAAAATC
AGCCTCGCTTTGCTCCCGCGCTTCGGAAAAGGTAGCCGGGTGATTTCGGG
TGGTTCCAAGGTCCCTTCGAAGCCTCTCATTTACTGGGGCTACGAGGCCT
CTCCCTTCTGCAGGCTTGTCAAGGAAAAACTCAATGAATTAGAGCTTCCG
CATGTCCAGAAATCGTGTGCCCGAGGCAGTGCAAAACGCAAGGAGCTGCA
GGCTCGTGCGGGGAAATTCCTTGTCCCATTTATTGAGGATCCTAATACTG
GTGTGAGCATGTACGAGAGTGCGGAGATTATGGAGTACCTCGAAAAGACG
TATGCGGCCTAGATGCTGTCCACGCCAGCTACGTCTTCTTGCTCGTCATG
TTGTTGCTGTGGTCTCACTCCATACACCAACACCTTCACTTCACTCCTCT
TACCCCCTCCCGTACCCCCAACCCACACCCACAGACAAATGGGACGTCTC
ATCCTCACGAGCGCGGCATTGGTCGTTCTCGCGTTTCAGACTACCACTGT
TGCCTTCCAACCTCGTGGCCGCCTGCATATGATTTGGGGAGGGCAACGAA
CTAAAAAGCCCGTCGCCATTGGCGGCCCCGTCAATGAGCCCAAACCTTTC
AGCGTTCGCCCGGACAAGTTCCTCGACGTCGCCACAGCCAGCACAGTCAG
CTTGTTGCGTGCGGGCTCCGGGGCATTCGTCCAGGGGTACAAGGTCGCAC
TCGTCGACACGGATCAAGTCGAAGCAGGCGAATACACCTTTGTGTCCAGT
GGGGGGAAACGCAGCAAGGAGACCAGTGCCACTTTCATCGCCCGCCCTAA
GCAACCTATCATCCTTTACGAATTCCAAGGCTGCCCTTTCTGTGCGAAGG
TCCGAGAAGTCGTCTCCATCTTGGATCTCGACGTGTTGTTTTACCCCTGT
CCGAGGGACAGCAAGGTGTTCCGTCCGGAAGCCATCTCTCGAGGGGGCAA
GTCGCAGTTCCCTTACATGGTGGACCCTAACACCAAAGTG
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Synonyms
Publications