jgi.p|Nanoce1779_2|582464, mRNA_3524 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582464
Unique Name	mRNA_3524
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1294
Alignment location	scaffold_6:570629..571922 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582550
Track	FilteredModels2
ProteinId	582464

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:570629..571922 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582464	gene_3524	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582464	mRNA_3524-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3524	CDS_3524	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:570629..571922+
coding sequence from alignment at scaffold_6:570629..571922+

mRNA sequence

>mRNA_3524 ID=mRNA_3524|Name=jgi.p|Nanoce1779_2|582464|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp
CGCGACTCAACCATCGCTGCTCTCTCATCACATATAGGAAGGATTTGTGT
CACACGTGTGCGCACAGACACCCATGTGCACCCCCACATCTTCTCTCAGG
CGATCAATCAAGTTTTCTTTGATGCTGCGTCTTTTCCGCCTGCCGGCCTT
GTCGTCCGCGGCCGCCTTCTCCTCCTCCAGCCCATCCCTCCTTCAGCCCT
CCGCCTCCACTTGCGCGGGGGCTTGCAGATCGTCGTTGTTATCATCCTCT
GCTTACAGACCAGCGACGGTACGGGCCATGTCTTCGACCGCCGTGGAAGA
TGCCACGCCGTCGGGCGTTGTGGATGCGCCGATTGCCTCCCGGTACGTGG
TCGGAGAGAAAGGAAGGGGGAAGGGGACGACCTTAGCAGATGACGCCACC
GTGGGGGCAAACGGAGATTAGGCAAAGCACAATTTGCTCTTGACAGCTTG
TGAATGAGGCCAGAGGGCTATGCTCTCTTGGGTCTGATGATGTCACAGTG
TCGGCGTGCAGTCAGCCTCCCGTAATGGTTTGTTGACATGAGGAGGTGGC
TGCCTTCGTTCCCTTCCACCACAAGCAAAGGGATATACATGCCCTTGATT
GCGGTCATCAAAGCATATACAACGGTCACCTACCTCTTTTTCCCTTTCCA
TAACTCTTCCAACCAGATGCACGAACGCCATCTCATCCCGCCCTCCTGCT
CTCCCTCCCTCCTCCCACCCCTCCCTTCAACAGCGAAATGCAGGAAGTCA
TCTCCCGGAAAGACCGCATCCGAATGTCCCCCTGGAAAATCAATCTCCTC
ACCCGGCAAATCCGTGGCCTGCCCGTCGTCGAAGCCCTAATGCAACTCAA
GTTCTCCCGAAAGCAAAAAGGCCCCCCACTGGTTGCGAAAGTCATCCAAA
ACGCTGCCAACCTGGCGAATATCCGTCACAACCTCCACCCGGAGGATTTG
ATGGTCGCTGAAGCGTTCACCAACCGCGCGAACATCCAAAAGGGGATCAT
GATTATGGGTCGGGGGCGATTCGGGCTCAAGCTAAGGAGGTATTCCCACG
TGGTTGTCCGATTGAAGGAGATTGATTTCGACGAGGCTTTGAAAGGGTGT
AAGAATAGGTTTCAGAAGCAACGGTGGGAGGCTCGGAAGAAGGTGGCGGA
GGAGGTGCGGGTTGCACGGAGGGCTGCTGGCGGGGCAAAGGGGGAGGAGT
AGGCGGCTCCTTAGGGGGAGCGTGACAGGGAAGGGGGGGTGACGAGAGAA
CGTAAGGAAGTGACGAGGAAGAGGGAGGGAGGAGGAGAGTGGGT

protein sequence of jgi.p|Nanoce1779_2|582464

>mRNA_3524-protein ID=mRNA_3524-protein|Name=jgi.p|Nanoce1779_2|582464|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MQEVISRKDRIRMSPWKINLLTRQIRGLPVVEALMQLKFSRKQKGPPLVA
KVIQNAANLANIRHNLHPEDLMVAEAFTNRANIQKGIMIMGRGRFGLKLR
RYSHVVVRLKEIDFDEALKGCKNRFQKQRWEARKKVAEEVRVARRAAGGA
KGEE*

mRNA from alignment at scaffold_6:570629..571922+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3524 ID=mRNA_3524|Name=jgi.p|Nanoce1779_2|582464|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp|location=Sequence derived from alignment at scaffold_6:570629..571922+ (Nannochloropsis oceanica)
CGCGACTCAACCATCGCTGCTCTCTCATCACATATAGGAAGGATTTGTGT
CACACGTGTGCGCACAGACACCCATGTGCACCCCCACATCTTCTCTCAGG
CGATCAATCAAGTTTTCTTTGATGCTGCGTCTTTTCCGCCTGCCGGCCTT
GTCGTCCGCGGCCGCCTTCTCCTCCTCCAGCCCATCCCTCCTTCAGCCCT
CCGCCTCCACTTGCGCGGGGGCTTGCAGATCGTCGTTGTTATCATCCTCT
GCTTACAGACCAGCGACGGTACGGGCCATGTCTTCGACCGCCGTGGAAGA
TGCCACGCCGTCGGGCGTTGTGGATGCGCCGATTGCCTCCCGGTACGTGG
TCGGAGAGAAAGGAAGGGGGAAGGGGACGACCTTAGCAGATGACGCCACC
GTGGGGGCAAACGGAGATTAGGCAAAGCACAATTTGCTCTTGACAGCTTG
TGAATGAGGCCAGAGGGCTATGCTCTCTTGGGTCTGATGATGTCACAGTG
TCGGCGTGCAGTCAGCCTCCCGTAATGGTTTGTTGACATGAGGAGGTGGC
TGCCTTCGTTCCCTTCCACCACAAGCAAAGGGATATACATGCCCTTGATT
GCGGTCATCAAAGCATATACAACGGTCACCTACCTCTTTTTCCCTTTCCA
TAACTCTTCCAACCAGATGCACGAACGCCATCTCATCCCGCCCTCCTGCT
CTCCCTCCCTCCTCCCACCCCTCCCTTCAACAGCGAAATGCAGGAAGTCA
TCTCCCGGAAAGACCGCATCCGAATGTCCCCCTGGAAAATCAATCTCCTC
ACCCGGCAAATCCGTGGCCTGCCCGTCGTCGAAGCCCTAATGCAACTCAA
GTTCTCCCGAAAGCAAAAAGGCCCCCCACTGGTTGCGAAAGTCATCCAAA
ACGCTGCCAACCTGGCGAATATCCGTCACAACCTCCACCCGGAGGATTTG
ATGGTCGCTGAAGCGTTCACCAACCGCGCGAACATCCAAAAGGGGATCAT
GATTATGGGTCGGGGGCGATTCGGGCTCAAGCTAAGGAGGTATTCCCACG
TGGTTGTCCGATTGAAGGAGATTGATTTCGACGAGGCTTTGAAAGGGTGT
AAGAATAGGTTTCAGAAGCAACGGTGGGAGGCTCGGAAGAAGGTGGCGGA
GGAGGTGCGGGTTGCACGGAGGGCTGCTGGCGGGGCAAAGGGGGAGGAGT
AGGCGGCTCCTTAGGGGGAGCGTGACAGGGAAGGGGGGGTGACGAGAGAA
CGTAAGGAAGTGACGAGGAAGAGGGAGGGAGGAGGAGAGTGGGT

Coding sequence (CDS) from alignment at scaffold_6:570629..571922+

>mRNA_3524 ID=mRNA_3524|Name=jgi.p|Nanoce1779_2|582464|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_6:570629..571922+ (Nannochloropsis oceanica)
ATGCAGGAAGTCATCTCCCGGAAAGACCGCATCCGAATGTCCCCCTGGAA
AATCAATCTCCTCACCCGGCAAATCCGTGGCCTGCCCGTCGTCGAAGCCC
TAATGCAACTCAAGTTCTCCCGAAAGCAAAAAGGCCCCCCACTGGTTGCG
AAAGTCATCCAAAACGCTGCCAACCTGGCGAATATCCGTCACAACCTCCA
CCCGGAGGATTTGATGGTCGCTGAAGCGTTCACCAACCGCGCGAACATCC
AAAAGGGGATCATGATTATGGGTCGGGGGCGATTCGGGCTCAAGCTAAGG
AGGTATTCCCACGTGGTTGTCCGATTGAAGGAGATTGATTTCGACGAGGC
TTTGAAAGGGTGTAAGAATAGGTTTCAGAAGCAACGGTGGGAGGCTCGGA
AGAAGGTGGCGGAGGAGGTGCGGGTTGCACGGAGGGCTGCTGGCGGGGCA
AAGGGGGAGGAGTAG

Synonyms

Publications