jgi.p|Nanoce1779_2|669552, mRNA_3609 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669552
Unique Name	mRNA_3609
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2459
Alignment location	scaffold_6:762964..765422 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669638
Track	FilteredModels2
ProteinId	669552

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:762964..765422 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669552	gene_3609	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669552	mRNA_3609-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3609	CDS_3609	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:762964..765422+
coding sequence from alignment at scaffold_6:762964..765422+

mRNA sequence

>mRNA_3609 ID=mRNA_3609|Name=jgi.p|Nanoce1779_2|669552|organism=Nannochloropsis oceanica|type=mRNA|length=2459bp
AAGTACCTGCAGGCGGAATCGCACGACACAGGGGATCTCGATTAGGTTAC
CGTCTGGGTCGCGGGTCTCGTGGTACATGCTGAGGGAGGGCGGAAGGGAG
GGAGGGAGGGACGTGAGTAGTGCTTTTTTGAGAAGGGTGTGCCACCTCCT
CTCTCCTGTCTCCCCCGCCCTTTTCTCCCTTTCTTCTTATTACCTCAAGT
CCCATGACATCCACATTCCTTGAAGGAACTTGACCATATCAAGCGTTACA
AGCACTTGGAGATGGGGGAGGGTTAGAGGGGGGGAGGAAAGGAGGGAAAG
AAAAGAATGCGTACGTGAGAGCTGTCACTGATTGGGTTTTAAAATGACAC
AACTGAACGCACTGGCATAATCTCGATGCGTACATAGGAGTGAGGGAAAA
GGGTAATGACAACAAGCCAAACAAAGTCATCCCCCATTCATTTTCCCTCC
CCTTCCCCCTCTTCCATCTCCGGACCCCCCCGTTTAAAACTACTCACGGG
ATATCGGCAACATGTTCGAGAATAGCACAGTGTACGTCCAGAACTGAATG
AATCCGGACAAGGCCGGGTCAGGTAATCTGGCGCCCACCCACAGGTAAGG
CATCTGCCCTCCTCTCCCTACATAGATCCCACCCACCACCGCCGCACACA
AACAACACAACACCTGCAATCCAAACACCATCATCTCCCGTAAATTGCTG
CAGGAAAGGAATATCCAATTTTTATCAGAATTAAATCAGCAGGATTCATG
AAGTCATGAGTGAAAGTTTAATGAAAATGTGATTGCGAATGTAATTTCCG
AACAACAACTCAACCTCCTGCCCTCCACTGTGGCAGAATCTGCGGTAACT
TAAACCACAAATAATTTAAAGCTTTAAATTTTGTGACACTCGTTTACTGT
CTACCACGCTTAGGTCTGCGCACCTATGGCTTATGAAGCATAAAGGGGAT
CGGGTTCGGGGTCGGTTGAAGTTTGCCACGTAGTGTTCGGTGCAGCATTA
TTTTCTTCCAGAGGCACAACTGGCGACGCACACACGTACACATCACTCTA
GAACAATCGGGGTGCGACAGCATACCTAACCACAATGCCCTTGAGGAATC
TTTTATGGAGCAACTCAAACCAGACTAAACGCATACTCCCCACATAGCCA
CCACATCAACGACGTCCTCATCCCCAATATGCCAACAACACTACCACCGC
TCCCCATTGTGGATCCTCACTTCCACATTTGGGACGCCAACACGCTTCCC
AACCCCAACCTCGGTGAGCTGACCATGAAAGCGCTGCCCGTTTACAGCTT
CCTGAATTACGAGCAGGACTGTGGCGTGGGGGTGGCGGGCTCCGTTCACA
TCGAAGCCGTCGTTGGTCAGGCCAAGGGTGCTGCAAAAGCGTTAGACCCC
GTCGCAGAGACGCGTTTCGTCCTTGAAAAAGTTGGAGCCGAAGGAGTGAA
GAACGTCAACATTGTAGCGTTTGTAAAGCTCAGTGCCATGCCCGAAGCAC
AGGCCGTCATCGACGCGCACAAACACCTGGCGGCTGAGCGATTCGTTGGC
GTGCGGATGATTTTGAATTATTCTTCCGATGACCCGTCTTTGACCTGGCC
TCAAGTGGAGCGCGGCGATTTCCTCACAGGCGGCGTACCATCGTTCAAGG
AGGGCTTTGCACTGCTTGCCCCGCGGGGGTTATCCTTCGATTTGCAAGTC
AATTGGTTTCAGCTTCAAGACGCTGCAACATTTTTGCAGGCCTTTCCCGA
AACGGTGGTTATTGTTGATCATATGGGTTGCTTGAAATTTGGGGGCTGGA
GATGAAGAGGACGCCAAGCGCATTGCTGTGTGGCAAGAGGGTATGAAGGC
GTTAGCTGCTTTGCCGAATGTGTACGTGAAGTTGTCGATGTTGGAATACA
TGCGTTCAGGGTGGCAGCACAAAGAGACGGGAATAGCGACGGCAGAGGTA
ATGTCAAGCGAGATCAGTGCCGCTGGGAACGATGTGGAGAAGGAAATAAG
CGAGGGCAGCAGCAGCACCACCAATGCTAATACTGTTGTGAAGGCGCGTG
TCCGAGAAGTTATTGAGTGGTTTGGGTCCGAGCGGTGTATGTTCGCGAGT
AACTTCCCAGTGGATAAGTGTCTGTTGGGTGGTGACGCTCAGCCGACCAC
GCTTGAGGCGTTGGTGCTGGCGCAGCATGCGTTGGTAAGTGACTTGCCGG
AGGAGCAGACACTGCAACTGTTTTCAGAGACGGCCAAGAAGGTATATAAG
CTCAAATAGGAGGAGAACGCGAAGAAAGCAGGAGTGCATAAAAGGAGGGA
AGGGAAAACGGGGGGAAACAGCAATCAGAAAAAGTTAAAAATAAGCAGGA
AAAGATATAAATCGAATCGATCTCAATTTGATGTGTTTTGAAGGTACATA
TCATACATGCCAGGAAAAAATAAGCCCCCAAAAAGAAATAAATGCCGGCC
TATTGTGCG

protein sequence of jgi.p|Nanoce1779_2|669552

>mRNA_3609-protein ID=mRNA_3609-protein|Name=jgi.p|Nanoce1779_2|669552|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MPTTLPPLPIVDPHFHIWDANTLPNPNLGELTMKALPVYSFLNYEQDCGV
GVAGSVHIEAVVGQAKGAAKALDPVAETRFVLEKVGAEGVKNVNIVAFVK
LSAMPEAQAVIDAHKHLAAERFVGVRMILNYSSDDPSLTWPQVERGDFLT
GGVPSFKEGFALLAPRGLSFDLQVNWFQLQDAATFLQAFPETVVIVDHMG
CLKFGGWR*

mRNA from alignment at scaffold_6:762964..765422+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3609 ID=mRNA_3609|Name=jgi.p|Nanoce1779_2|669552|organism=Nannochloropsis oceanica|type=mRNA|length=2459bp|location=Sequence derived from alignment at scaffold_6:762964..765422+ (Nannochloropsis oceanica)
AAGTACCTGCAGGCGGAATCGCACGACACAGGGGATCTCGATTAGGTTAC
CGTCTGGGTCGCGGGTCTCGTGGTACATGCTGAGGGAGGGCGGAAGGGAG
GGAGGGAGGGACGTGAGTAGTGCTTTTTTGAGAAGGGTGTGCCACCTCCT
CTCTCCTGTCTCCCCCGCCCTTTTCTCCCTTTCTTCTTATTACCTCAAGT
CCCATGACATCCACATTCCTTGAAGGAACTTGACCATATCAAGCGTTACA
AGCACTTGGAGATGGGGGAGGGTTAGAGGGGGGGAGGAAAGGAGGGAAAG
AAAAGAATGCGTACGTGAGAGCTGTCACTGATTGGGTTTTAAAATGACAC
AACTGAACGCACTGGCATAATCTCGATGCGTACATAGGAGTGAGGGAAAA
GGGTAATGACAACAAGCCAAACAAAGTCATCCCCCATTCATTTTCCCTCC
CCTTCCCCCTCTTCCATCTCCGGACCCCCCCGTTTAAAACTACTCACGGG
ATATCGGCAACATGTTCGAGAATAGCACAGTGTACGTCCAGAACTGAATG
AATCCGGACAAGGCCGGGTCAGGTAATCTGGCGCCCACCCACAGGTAAGG
CATCTGCCCTCCTCTCCCTACATAGATCCCACCCACCACCGCCGCACACA
AACAACACAACACCTGCAATCCAAACACCATCATCTCCCGTAAATTGCTG
CAGGAAAGGAATATCCAATTTTTATCAGAATTAAATCAGCAGGATTCATG
AAGTCATGAGTGAAAGTTTAATGAAAATGTGATTGCGAATGTAATTTCCG
AACAACAACTCAACCTCCTGCCCTCCACTGTGGCAGAATCTGCGGTAACT
TAAACCACAAATAATTTAAAGCTTTAAATTTTGTGACACTCGTTTACTGT
CTACCACGCTTAGGTCTGCGCACCTATGGCTTATGAAGCATAAAGGGGAT
CGGGTTCGGGGTCGGTTGAAGTTTGCCACGTAGTGTTCGGTGCAGCATTA
TTTTCTTCCAGAGGCACAACTGGCGACGCACACACGTACACATCACTCTA
GAACAATCGGGGTGCGACAGCATACCTAACCACAATGCCCTTGAGGAATC
TTTTATGGAGCAACTCAAACCAGACTAAACGCATACTCCCCACATAGCCA
CCACATCAACGACGTCCTCATCCCCAATATGCCAACAACACTACCACCGC
TCCCCATTGTGGATCCTCACTTCCACATTTGGGACGCCAACACGCTTCCC
AACCCCAACCTCGGTGAGCTGACCATGAAAGCGCTGCCCGTTTACAGCTT
CCTGAATTACGAGCAGGACTGTGGCGTGGGGGTGGCGGGCTCCGTTCACA
TCGAAGCCGTCGTTGGTCAGGCCAAGGGTGCTGCAAAAGCGTTAGACCCC
GTCGCAGAGACGCGTTTCGTCCTTGAAAAAGTTGGAGCCGAAGGAGTGAA
GAACGTCAACATTGTAGCGTTTGTAAAGCTCAGTGCCATGCCCGAAGCAC
AGGCCGTCATCGACGCGCACAAACACCTGGCGGCTGAGCGATTCGTTGGC
GTGCGGATGATTTTGAATTATTCTTCCGATGACCCGTCTTTGACCTGGCC
TCAAGTGGAGCGCGGCGATTTCCTCACAGGCGGCGTACCATCGTTCAAGG
AGGGCTTTGCACTGCTTGCCCCGCGGGGGTTATCCTTCGATTTGCAAGTC
AATTGGTTTCAGCTTCAAGACGCTGCAACATTTTTGCAGGCCTTTCCCGA
AACGGTGGTTATTGTTGATCATATGGGTTGCTTGAAATTTGGGGGCTGGA
GATGAAGAGGACGCCAAGCGCATTGCTGTGTGGCAAGAGGGTATGAAGGC
GTTAGCTGCTTTGCCGAATGTGTACGTGAAGTTGTCGATGTTGGAATACA
TGCGTTCAGGGTGGCAGCACAAAGAGACGGGAATAGCGACGGCAGAGGTA
ATGTCAAGCGAGATCAGTGCCGCTGGGAACGATGTGGAGAAGGAAATAAG
CGAGGGCAGCAGCAGCACCACCAATGCTAATACTGTTGTGAAGGCGCGTG
TCCGAGAAGTTATTGAGTGGTTTGGGTCCGAGCGGTGTATGTTCGCGAGT
AACTTCCCAGTGGATAAGTGTCTGTTGGGTGGTGACGCTCAGCCGACCAC
GCTTGAGGCGTTGGTGCTGGCGCAGCATGCGTTGGTAAGTGACTTGCCGG
AGGAGCAGACACTGCAACTGTTTTCAGAGACGGCCAAGAAGGTATATAAG
CTCAAATAGGAGGAGAACGCGAAGAAAGCAGGAGTGCATAAAAGGAGGGA
AGGGAAAACGGGGGGAAACAGCAATCAGAAAAAGTTAAAAATAAGCAGGA
AAAGATATAAATCGAATCGATCTCAATTTGATGTGTTTTGAAGGTACATA
TCATACATGCCAGGAAAAAATAAGCCCCCAAAAAGAAATAAATGCCGGCC
TATTGTGCG

Coding sequence (CDS) from alignment at scaffold_6:762964..765422+

>mRNA_3609 ID=mRNA_3609|Name=jgi.p|Nanoce1779_2|669552|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_6:762964..765422+ (Nannochloropsis oceanica)
ATGCCAACAACACTACCACCGCTCCCCATTGTGGATCCTCACTTCCACAT
TTGGGACGCCAACACGCTTCCCAACCCCAACCTCGGTGAGCTGACCATGA
AAGCGCTGCCCGTTTACAGCTTCCTGAATTACGAGCAGGACTGTGGCGTG
GGGGTGGCGGGCTCCGTTCACATCGAAGCCGTCGTTGGTCAGGCCAAGGG
TGCTGCAAAAGCGTTAGACCCCGTCGCAGAGACGCGTTTCGTCCTTGAAA
AAGTTGGAGCCGAAGGAGTGAAGAACGTCAACATTGTAGCGTTTGTAAAG
CTCAGTGCCATGCCCGAAGCACAGGCCGTCATCGACGCGCACAAACACCT
GGCGGCTGAGCGATTCGTTGGCGTGCGGATGATTTTGAATTATTCTTCCG
ATGACCCGTCTTTGACCTGGCCTCAAGTGGAGCGCGGCGATTTCCTCACA
GGCGGCGTACCATCGTTCAAGGAGGGCTTTGCACTGCTTGCCCCGCGGGG
GTTATCCTTCGATTTGCAAGTCAATTGGTTTCAGCTTCAAGACGCTGCAA
CATTTTTGCAGGCCTTTCCCGAAACGGTGGTTATTGTTGATCATATGGGT
TGCTTGAAATTTGGGGGCTGGAGATGA

Synonyms

Publications