Properties
| Property Name | Value |
|---|
| TranscriptId | 663421 |
| Track | FilteredModels2 |
| ProteinId | 663335 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:830256..831695 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3636 ID=mRNA_3636|Name=jgi.p|Nanoce1779_2|663335|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp
CAAATCACCTATATCCATCCCTTGCTTCAATTCATCATCCTGCAAAAGCT
CTGCCCAAGTTGTCGCTTTCTGTGACACCATGGGCGATTGTGATGTAAAA
GTCGGTTTGCGCCCTCGGAGGAGGGTACAGGAGGACCCCACGATCCGCCC
AAAGGGGCTCCTGCTGATAGCTGCGGAACAGTGGGGGTCAGAACGCCTTG
TTGAGAGGAAGGCCATGAAGGAGAACATTTGGGTAGGCCGCGGTATCCGC
CGCCAGTTTCAAAATCCTTCTCAAAGTCCTTGTTGCTGCTACTGCTACAC
TTGGGCAATGCTATGCGACGGGAGCGACTTCGCTGCTGCTGCAGAGAGTA
TGAAACCCTCCCTCCCCGCGAATGGCGCCGATTCAGGGTATTTATCCGCT
GCAGATCCCTATGCTTCCCCCTATCTACCCCCATTAGGTCGTCTTCCTCA
TCCTCGGTGGCATCCCCGCCGTTTTTATTCTCCAGACGTAAGAAGATGTC
AATCGCTGCATTGTCAACCTGTTCATTTCGATGTGGGAGGGCTCGGACAA
GTAGCTTTTGACTTGTCGCACCAGCCCTTGCACGCCGTGGAAGCGGGGAC
TGCTGTAGCTACCACCTTCGTCATCCTCATCGTCGTCCTTCTCGTCCTCT
TCCTCTTCCTCGTCGTCCTCGTCGTCGTCTCCCATATCCTCCTCCGCGTC
ACGTTGGGTTTCCCCGCTCCCATTCTCTCCTTCCCCATCCTTACCGCCCT
CCACCTCTACCTGCTTGGTGTCAAGTGGAACCACACTTTCACTGTCCTCC
TCTTCCTTCACTTCCACCTCCTTCTTTACCTCCCCAGCCACCACTCCCTC
CCTCGGCCCAAACAACGCTGCATACCTCTTCCTCCTCCATTCCTTCTCCC
CTCCACATACCTCATCCCTTTCCACCCTACAAATCCCTGCTACATCTTCC
AAGAACTCCCCTGCATTCGTTCTCCTTAGTCGATAATTCAAATCCCCAAA
AACAAACACACGTGGTGCTGGTGGTGGACATCGAGCAAATAATCTTCCCT
CCACAAATTCGTCTCGTACGTCAACCGCCACGCGTCCTGATTCCTCCTCT
TCAGCCTGGAACGACCCTTCAAATCCGACGATAAATGACACGCAAGCAAA
GCAAACGTAGTGTCGTAATACCTGAAAGCCAATCCCACGCCTCCCTTGTT
TTGCGCGACAGTCACCCCCAAATTCTTCCCACGCGCCAGCGCGCTCGTCT
TACTCTCGTGCAGCAAGAAACGGTTCGCCCGTACCTCCTCCCTTCTCGCC
AATACCAGCAAAGCAATAAATCCAAGGTACCCTAACGCGCGATTTGTCGA
CCCTATCGCTCGGCGACACATCACGTACTTCTCAGGCCCCCCCAAGTGAG
CCAAAATGTCCTCCCCTAGCTGCTGATAAATCATGCACTC back to topprotein sequence of jgi.p|Nanoce1779_2|663335 >mRNA_3636-protein ID=mRNA_3636-protein|Name=jgi.p|Nanoce1779_2|663335|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MGDCDVKVGLRPRRRVQEDPTIRPKGLLLIAAEQWGSERLVERKAMKENI
WVGRGIRRQFQNPSQSPCCCYCYTWAMLCDGSDFAAAAESMKPSLPANGA
DSGYLSAADPYASPYLPPLGRLPHPRWHPRRFYSPDVRRCQSLHCQPVHF
DVGGLGQVAFDLSHQPLHAVEAGTAVATTFVILIVVLLVLFLFLVVLVVV
SHILLRVTLGFPAPILSFPILTALHLYLLGVKWNHTFTVLLFLHFHLLLY
LPSHHSLPRPKQRCIPLPPPFLLPSTYLIPFHPTNPCYIFQELPCIRSP* back to topmRNA from alignment at scaffold_6:830256..831695- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3636 ID=mRNA_3636|Name=jgi.p|Nanoce1779_2|663335|organism=Nannochloropsis oceanica|type=mRNA|length=1440bp|location=Sequence derived from alignment at scaffold_6:830256..831695- (Nannochloropsis oceanica)
CAAATCACCTATATCCATCCCTTGCTTCAATTCATCATCCTGCAAAAGCT
CTGCCCAAGTTGTCGCTTTCTGTGACACCATGGGCGATTGTGATGTAAAA
GTCGGTTTGCGCCCTCGGAGGAGGGTACAGGAGGACCCCACGATCCGCCC
AAAGGGGCTCCTGCTGATAGCTGCGGAACAGTGGGGGTCAGAACGCCTTG
TTGAGAGGAAGGCCATGAAGGAGAACATTTGGGTAGGCCGCGGTATCCGC
CGCCAGTTTCAAAATCCTTCTCAAAGTCCTTGTTGCTGCTACTGCTACAC
TTGGGCAATGCTATGCGACGGGAGCGACTTCGCTGCTGCTGCAGAGAGTA
TGAAACCCTCCCTCCCCGCGAATGGCGCCGATTCAGGGTATTTATCCGCT
GCAGATCCCTATGCTTCCCCCTATCTACCCCCATTAGGTCGTCTTCCTCA
TCCTCGGTGGCATCCCCGCCGTTTTTATTCTCCAGACGTAAGAAGATGTC
AATCGCTGCATTGTCAACCTGTTCATTTCGATGTGGGAGGGCTCGGACAA
GTAGCTTTTGACTTGTCGCACCAGCCCTTGCACGCCGTGGAAGCGGGGAC
TGCTGTAGCTACCACCTTCGTCATCCTCATCGTCGTCCTTCTCGTCCTCT
TCCTCTTCCTCGTCGTCCTCGTCGTCGTCTCCCATATCCTCCTCCGCGTC
ACGTTGGGTTTCCCCGCTCCCATTCTCTCCTTCCCCATCCTTACCGCCCT
CCACCTCTACCTGCTTGGTGTCAAGTGGAACCACACTTTCACTGTCCTCC
TCTTCCTTCACTTCCACCTCCTTCTTTACCTCCCCAGCCACCACTCCCTC
CCTCGGCCCAAACAACGCTGCATACCTCTTCCTCCTCCATTCCTTCTCCC
CTCCACATACCTCATCCCTTTCCACCCTACAAATCCCTGCTACATCTTCC
AAGAACTCCCCTGCATTCGTTCTCCTTAGTCGATAATTCAAATCCCCAAA
AACAAACACACGTGGTGCTGGTGGTGGACATCGAGCAAATAATCTTCCCT
CCACAAATTCGTCTCGTACGTCAACCGCCACGCGTCCTGATTCCTCCTCT
TCAGCCTGGAACGACCCTTCAAATCCGACGATAAATGACACGCAAGCAAA
GCAAACGTAGTGTCGTAATACCTGAAAGCCAATCCCACGCCTCCCTTGTT
TTGCGCGACAGTCACCCCCAAATTCTTCCCACGCGCCAGCGCGCTCGTCT
TACTCTCGTGCAGCAAGAAACGGTTCGCCCGTACCTCCTCCCTTCTCGCC
AATACCAGCAAAGCAATAAATCCAAGGTACCCTAACGCGCGATTTGTCGA
CCCTATCGCTCGGCGACACATCACGTACTTCTCAGGCCCCCCCAAGTGAG
CCAAAATGTCCTCCCCTAGCTGCTGATAAATCATGCACTC back to topCoding sequence (CDS) from alignment at scaffold_6:830256..831695- >mRNA_3636 ID=mRNA_3636|Name=jgi.p|Nanoce1779_2|663335|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_6:830256..831695- (Nannochloropsis oceanica)
ATGGGCGATTGTGATGTAAAAGTCGGTTTGCGCCCTCGGAGGAGGGTACA
GGAGGACCCCACGATCCGCCCAAAGGGGCTCCTGCTGATAGCTGCGGAAC
AGTGGGGGTCAGAACGCCTTGTTGAGAGGAAGGCCATGAAGGAGAACATT
TGGGTAGGCCGCGGTATCCGCCGCCAGTTTCAAAATCCTTCTCAAAGTCC
TTGTTGCTGCTACTGCTACACTTGGGCAATGCTATGCGACGGGAGCGACT
TCGCTGCTGCTGCAGAGAGTATGAAACCCTCCCTCCCCGCGAATGGCGCC
GATTCAGGGTATTTATCCGCTGCAGATCCCTATGCTTCCCCCTATCTACC
CCCATTAGGTCGTCTTCCTCATCCTCGGTGGCATCCCCGCCGTTTTTATT
CTCCAGACGTAAGAAGATGTCAATCGCTGCATTGTCAACCTGTTCATTTC
GATGTGGGAGGGCTCGGACAAGTAGCTTTTGACTTGTCGCACCAGCCCTT
GCACGCCGTGGAAGCGGGGACTGCTGTAGCTACCACCTTCGTCATCCTCA
TCGTCGTCCTTCTCGTCCTCTTCCTCTTCCTCGTCGTCCTCGTCGTCGTC
TCCCATATCCTCCTCCGCGTCACGTTGGGTTTCCCCGCTCCCATTCTCTC
CTTCCCCATCCTTACCGCCCTCCACCTCTACCTGCTTGGTGTCAAGTGGA
ACCACACTTTCACTGTCCTCCTCTTCCTTCACTTCCACCTCCTTCTTTAC
CTCCCCAGCCACCACTCCCTCCCTCGGCCCAAACAACGCTGCATACCTCT
TCCTCCTCCATTCCTTCTCCCCTCCACATACCTCATCCCTTTCCACCCTA
CAAATCCCTGCTACATCTTCCAAGAACTCCCCTGCATTCGTTCTCCTTAG back to top
|