jgi.p|Nanoce1779_2|611988, mRNA_10640 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611988
Unique NamemRNA_10640
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1872
Alignment locationscaffold_61:7946..9817 -

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Properties
Property NameValue
TranscriptId612074
TrackFilteredModels2
ProteinId611988
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_61supercontigscaffold_61:7946..9817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611988gene_10640Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611988mRNA_10640-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10640CDS_10640Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10640 ID=mRNA_10640|Name=jgi.p|Nanoce1779_2|611988|organism=Nannochloropsis oceanica|type=mRNA|length=1872bp
TCAAAGAGACAATGAAAAAAAATCCACCCTCTAGAGCTGTCACGTATTTA
TTTCTTGCAGATCGAACGAAGATGAGCGCTGTAGGGGAGATCTGGAAGGA
GGTGCAGAAGAGGGAAAGAAAGGGAATAAGCGATCGAATAGAGAAGTGGG
AGTAAAGATACAGAGGAAAAGAAACATACGCTAATTTCCGCAGGCGAGTT
TCCTTAGGAACGATGAAAGCATTCTTATCCTGAAGAGGAACAACTCATCC
AAGATGGCATATGCGCTCAGTTAAGACGGGTGGAACAGCTGACCATGTTC
CGTTTTTTCAAGTGCCTTCTCTCGAGGTTTCGCGCAGAAAACGAACCAAA
ATTGAGCTGATGACGGAAAATTCGCCTAAATCTAGCAGTTTCGAATGTTT
CTTCACATTTTTCATCTTTTAATGCTACACAAGTTGGCGCAATTAAAAGT
AAAAACGAGGTTCTTCGTCTCGCCAAGGCGATTCCGGGGCTGTACCTGGC
TCAGTTGGCGCCATTTTGATTGCCAAGCGCAAAAAATCTCCCCCCCTATT
TCTTTCCATTTTATCTCGCGAGCACGCCTATAAAAGGGCGTACACAAATA
CTGTCAAGGAGAACATGGAGGAGATGCAGAGCGAGGTTGTTGGATTCGGG
ATGCATTGACGCGTGCAAAGGGTGCAGCACGACGCTGTCTTTCAAGGCCC
TCTGCGGCAGTCGGCATTTTGAGGATTCTACACTAAGCATTCTTATGAAA
AGTCTTTATCAAGGCCCATTCGCTCGAAACAAATGAAATAATGTAGTGGA
GGCGACATATTTTCCTTTGACGGCCTTGTCGAGCAGTCGCTTGCTATCTA
CAGTATGAATCGATTTTGGTCCGACTGTTGCGCACTTAAAAACGATGGTT
TTCCGCGTTCTTCTCCTCCCACAAACCACCAACGCACATGCGTGCTAGGC
AACACACATGGAGCAAAATATAATGCACAAGGCTTTATGCAGTTTTTGTG
ATGTCGCCCCGTGTTTTGTGTGGTTTTGAGCTTCCCGTATATGTAGAAGG
AGTGGAACTTGGACCAAGTTCCACCGTTCCGATCCTTCCCACAACTCAAC
GAAGTCAACTAAATGGCCAAAAATACTTCCAAGGAACGCATTTGTTTCTT
CTTTCTATTGTATTTTTTATGCATCTTTCTTCGACGTCATCTTCGATTTC
TTCTGGGCTTCATCCGACCTCTACTGTTTCATCCTGACTATCTCCGACCT
CGACGTTTTCTCCCTTTTCTTTTTTTTATGGAGGATCAAGCCCATGTGTG
CTGCAGGTGGTGTCACAAGCTCCATTGGTCCAGGATTAAAACTGATCCCG
CAGACACTACTGTCTCCAGCTGAGTGATGCTTCCGTTTGTTCTGCTTTCT
TCCCGGGACGTCTCTTTATTCTCGCTAGTTTTTCATCTTCACTATCATTA
TCTTCTTCTGCTTCTTCCTGCCTCTGTATTTTTTCTGCTTCTCCCTGTTG
TTCTAGTTCTTCCGCCACATCATATTTTCGTGTTTCCTCATGCACTTTTT
GCTCATCATCATCATCATCTTCTTCTTCTTCTTCTTGCTTATCATCATCA
TCTTCTCTTCTTCTGCCACTTCATAGTGACGTATTTCATTTTGTTCTCCG
CATGCTTTCTCTCTTTCGTTTTCCATCTTCCTGAATTGTCTCCGTTTCCA
CACTACTAGCTTTTCTTATTTCTTTCAGTTTCTTTTCTTCGTTTCCTTGC
TGCGTCATTTCACCCCTTTCTTGCTGCATCTTTATCGGCATAGTGACATC
TCCTTCTATCATATTTGAGCTAAATCATACAAAAACACGACTTTCGATAG
CCAATTTGAGTGATAAGCCAAT
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protein sequence of jgi.p|Nanoce1779_2|611988

>mRNA_10640-protein ID=mRNA_10640-protein|Name=jgi.p|Nanoce1779_2|611988|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MLPFVLLSSRDVSLFSLVFHLHYHYLLLLLPASVFFLLLPVVLVLPPHHI
FVFPHALFAHHHHHLLLLLLAYHHHLLFFCHFIVTYFILFSACFLSFVFH
LPELSPFPHY*
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mRNA from alignment at scaffold_61:7946..9817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10640 ID=mRNA_10640|Name=jgi.p|Nanoce1779_2|611988|organism=Nannochloropsis oceanica|type=mRNA|length=1872bp|location=Sequence derived from alignment at scaffold_61:7946..9817- (Nannochloropsis oceanica)
TCAAAGAGACAATGAAAAAAAATCCACCCTCTAGAGCTGTCACGTATTTA
TTTCTTGCAGATCGAACGAAGATGAGCGCTGTAGGGGAGATCTGGAAGGA
GGTGCAGAAGAGGGAAAGAAAGGGAATAAGCGATCGAATAGAGAAGTGGG
AGTAAAGATACAGAGGAAAAGAAACATACGCTAATTTCCGCAGGCGAGTT
TCCTTAGGAACGATGAAAGCATTCTTATCCTGAAGAGGAACAACTCATCC
AAGATGGCATATGCGCTCAGTTAAGACGGGTGGAACAGCTGACCATGTTC
CGTTTTTTCAAGTGCCTTCTCTCGAGGTTTCGCGCAGAAAACGAACCAAA
ATTGAGCTGATGACGGAAAATTCGCCTAAATCTAGCAGTTTCGAATGTTT
CTTCACATTTTTCATCTTTTAATGCTACACAAGTTGGCGCAATTAAAAGT
AAAAACGAGGTTCTTCGTCTCGCCAAGGCGATTCCGGGGCTGTACCTGGC
TCAGTTGGCGCCATTTTGATTGCCAAGCGCAAAAAATCTCCCCCCCTATT
TCTTTCCATTTTATCTCGCGAGCACGCCTATAAAAGGGCGTACACAAATA
CTGTCAAGGAGAACATGGAGGAGATGCAGAGCGAGGTTGTTGGATTCGGG
ATGCATTGACGCGTGCAAAGGGTGCAGCACGACGCTGTCTTTCAAGGCCC
TCTGCGGCAGTCGGCATTTTGAGGATTCTACACTAAGCATTCTTATGAAA
AGTCTTTATCAAGGCCCATTCGCTCGAAACAAATGAAATAATGTAGTGGA
GGCGACATATTTTCCTTTGACGGCCTTGTCGAGCAGTCGCTTGCTATCTA
CAGTATGAATCGATTTTGGTCCGACTGTTGCGCACTTAAAAACGATGGTT
TTCCGCGTTCTTCTCCTCCCACAAACCACCAACGCACATGCGTGCTAGGC
AACACACATGGAGCAAAATATAATGCACAAGGCTTTATGCAGTTTTTGTG
ATGTCGCCCCGTGTTTTGTGTGGTTTTGAGCTTCCCGTATATGTAGAAGG
AGTGGAACTTGGACCAAGTTCCACCGTTCCGATCCTTCCCACAACTCAAC
GAAGTCAACTAAATGGCCAAAAATACTTCCAAGGAACGCATTTGTTTCTT
CTTTCTATTGTATTTTTTATGCATCTTTCTTCGACGTCATCTTCGATTTC
TTCTGGGCTTCATCCGACCTCTACTGTTTCATCCTGACTATCTCCGACCT
CGACGTTTTCTCCCTTTTCTTTTTTTTATGGAGGATCAAGCCCATGTGTG
CTGCAGGTGGTGTCACAAGCTCCATTGGTCCAGGATTAAAACTGATCCCG
CAGACACTACTGTCTCCAGCTGAGTGATGCTTCCGTTTGTTCTGCTTTCT
TCCCGGGACGTCTCTTTATTCTCGCTAGTTTTTCATCTTCACTATCATTA
TCTTCTTCTGCTTCTTCCTGCCTCTGTATTTTTTCTGCTTCTCCCTGTTG
TTCTAGTTCTTCCGCCACATCATATTTTCGTGTTTCCTCATGCACTTTTT
GCTCATCATCATCATCATCTTCTTCTTCTTCTTCTTGCTTATCATCATCA
TCTTCTCTTCTTCTGCCACTTCATAGTGACGTATTTCATTTTGTTCTCCG
CATGCTTTCTCTCTTTCGTTTTCCATCTTCCTGAATTGTCTCCGTTTCCA
CACTACTAGCTTTTCTTATTTCTTTCAGTTTCTTTTCTTCGTTTCCTTGC
TGCGTCATTTCACCCCTTTCTTGCTGCATCTTTATCGGCATAGTGACATC
TCCTTCTATCATATTTGAGCTAAATCATACAAAAACACGACTTTCGATAG
CCAATTTGAGTGATAAGCCAAT
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Coding sequence (CDS) from alignment at scaffold_61:7946..9817-

>mRNA_10640 ID=mRNA_10640|Name=jgi.p|Nanoce1779_2|611988|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_61:7946..9817- (Nannochloropsis oceanica)
ATGCTTCCGTTTGTTCTGCTTTCTTCCCGGGACGTCTCTTTATTCTCGCT
AGTTTTTCATCTTCACTATCATTATCTTCTTCTGCTTCTTCCTGCCTCTG
TATTTTTTCTGCTTCTCCCTGTTGTTCTAGTTCTTCCGCCACATCATATT
TTCGTGTTTCCTCATGCACTTTTTGCTCATCATCATCATCATCTTCTTCT
TCTTCTTCTTGCTTATCATCATCATCTTCTCTTCTTCTGCCACTTCATAG
TGACGTATTTCATTTTGTTCTCCGCATGCTTTCTCTCTTTCGTTTTCCAT
CTTCCTGAATTGTCTCCGTTTCCACACTACTAG
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Synonyms
Publications