jgi.p|Nanoce1779_2|553943, mRNA_3302 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|553943
Unique NamemRNA_3302
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1508
Alignment locationscaffold_7:1148239..1149958 -

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Properties
Property NameValue
TranscriptId554029
TrackFilteredModels2
ProteinId553943
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1148239..1149958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553943gene_3302Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553943mRNA_3302-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3302CDS_3302Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3302 ID=mRNA_3302|Name=jgi.p|Nanoce1779_2|553943|organism=Nannochloropsis oceanica|type=mRNA|length=1508bp
ACAGGAGGATGGCAGCGTGTCCCGACGAGTTTGACGTGGTTGCCACCGAG
ACCGACATCCACAACCCCCGTGCACACACCGCCCACTACTACCATGCCTC
CTCCACGTCACGTGTGCTTCTGCGCGACGACGCCCGGCACGGCCTCCTCT
GGCGCGCCTTGCTCGCCCCCCGCACCTTGCTCGCCTCGACGCTCCACGGA
CTGAGCGCCACATTTCTTCCTGTAGGATATCCACACAGCGTTCGGGAAGA
GTATCTGGTTTATCAAACTTGGGACACAATCCAGGCCCTGTGTAGCTACT
TGAGGGGAATTCTGACCACCAAAGCCATCTTGGAAGGAAGCGGGGTGGGC
TCTGAGACGGCCAGTGCGCTGTCGGCTGCCATGAATTGGGTGTTTCGGGA
TGGGGTGGGTATGTCCTCTTCCCTCTTGTTTTCCTCGCTCGCCTCGATGA
GCTTTGACGGAAACGTCAAGGAGTGGCGGCTCTTTGCCGACATTGCAAAT
GACTTCGGCCTCACCCTCGACATGCTCACGGGTCTTCCCATCTTCAAACC
CTCCTTTCTCCTCCTCACCTGCATCTCGACCGTTTGCAAAACCATGTGCG
GCGTAGCCGCGGGATGCACCAAAAGCAGCATCACCGCCCACTTCGCCCTT
GAGGGAAACATTGCTGATGTCTCCGCGAAGGAAAACGCACAAGAGACCGC
CGTTACCCTCCTGGGGATATGCGGAGGCCTTTTCTTTGCACAGTGGATTG
CCAGTCCAACCGCGGCCTGGCCGGTGTTTTTGTTCTTGACGGCTTTGCAT
GTCTACGCTAATTACAAGGGAGTAGTTGCTCTACAGCTTTTTTCTCTCAA
TACCCAACGAGCCTCCCTCCTCATCCACCACTTCCTCAAACACGACGTAC
GCAGTAGATCTAGCAACGCTTCCTCCCATTCCCCTCCGCCTTTCCTTCTC
CTTACCCCCTCGCAAGTCAAAACCCGTGAGAAGGTCTACCAACCTCTCTG
GAGCTGGCTCCTTGCCCAGCAGCCACTCATGGGCTGTCGTGTCAGCGACC
TCTCTCTCCCTTCCTCCTCACATCTCTCCTACCTGCTCTTCCGTGTCTAC
ACCCGCGAGAAATACCTCCTCTCCTTCTCCCCCTCCTCCGGGCGGTTGCT
CGTGGTCTTCCGTACAGGCGCCAGCCCTCAGGATGAGTTGAAAGCGTTCT
TCCAAGCACAGGCCATGCGTTTCCTCTACCCCGAGCTGACTCCGCGGAGG
GCGAGAGAGGAGGCAGGGAAGGAGAGAGGGAGGGAAGCGGCAGAGTGGCC
ATCACCGATGTTGATGAAGGCAGTACTAAAGAGTTATGAAATGACTGTGC
ATCGTTTCCCTGTGTTTTGGGAGGCGTTGGTAGATGGAGGGAGAAAAGAA
GGGAAGGAGGGAGGGGGAAAAGAAAGGTGGGAGTTGAAAAGGGTGAATTT
GGGGACGGGGGGATGGAGGTTGATGTCGGGTGAGGAGGAGCACAAGAAGA
AGAGATGA
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protein sequence of jgi.p|Nanoce1779_2|553943

>mRNA_3302-protein ID=mRNA_3302-protein|Name=jgi.p|Nanoce1779_2|553943|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MAACPDEFDVVATETDIHNPRAHTAHYYHASSTSRVLLRDDARHGLLWRA
LLAPRTLLASTLHGLSATFLPVGYPHSVREEYLVYQTWDTIQALCSYLRG
ILTTKAILEGSGVGSETASALSAAMNWVFRDGVGMSSSLLFSSLASMSFD
GNVKEWRLFADIANDFGLTLDMLTGLPIFKPSFLLLTCISTVCKTMCGVA
AGCTKSSITAHFALEGNIADVSAKENAQETAVTLLGICGGLFFAQWIASP
TAAWPVFLFLTALHVYANYKGVVALQLFSLNTQRASLLIHHFLKHDVRSR
SSNASSHSPPPFLLLTPSQVKTREKVYQPLWSWLLAQQPLMGCRVSDLSL
PSSSHLSYLLFRVYTREKYLLSFSPSSGRLLVVFRTGASPQDELKAFFQA
QAMRFLYPELTPRRAREEAGKERGREAAEWPSPMLMKAVLKSYEMTVHRF
PVFWEALVDGGRKEGKEGGGKERWELKRVNLGTGGWRLMSGEEEHKKKR*
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mRNA from alignment at scaffold_7:1148239..1149958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3302 ID=mRNA_3302|Name=jgi.p|Nanoce1779_2|553943|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp|location=Sequence derived from alignment at scaffold_7:1148239..1149958- (Nannochloropsis oceanica)
ACAGGAGGATGGCAGCGTGTCCCGACGAGTTTGACGTGGTTGCCACCGAG
ACCGACATCCACAACCCCCGTGCACACACCGCCCACTACTACCATGCCTC
CTCCACGTCACGTGTGCTTCTGCGCGACGACGCCCGGCACGGCCTCCTCT
GGCGCGCCTTGCTCGCCCCCCGCACCTTGCTCGCCTCGACGCTCCACGGA
CTGAGCGCCACATTTCTTCCTGTAGGATATCCACACAGCGTTCGGGAAGA
GTATCTGGTTTATCAAACTTGGGACACAATCCAGGCCCTGTGTAGCTACT
TGAGGGGAATTCTGACCACCAAAGCCATCTTGGAAGGAAGCGGGGTGGGC
TCTGAGACGGCCAGTGCGCTGTCGGCTGCCATGAATTGGGTGTTTCGGGA
TGGGGTGGGTATGTCCTCTTCCCTCTTGTTTTCCTCGCTCGCCTCGATGA
GCTTTGACGGAAACGTCAAGGAGTGGCGGCTCTTTGCCGACATTGCAAAT
GGTACGTCTTTGCTTCTTTACTTCGTCGTACATCTTCTTCAGCTCCGCTC
AAAACAGAGACTGCTCATGTCTGAATCGTCCCTCATTCCCTCCATATTTG
CTCGACCTTTCCCTTCCAATTCCTGCCCCCTGATTACCCACATTTATCTA
CCTTCTCACCCTCCCTCCCTCCCTCCCTGCCCACGCCCCTTCCTCTCCTC
CCTCCAAACCCAGACTTCGGCCTCACCCTCGACATGCTCACGGGTCTTCC
CATCTTCAAACCCTCCTTTCTCCTCCTCACCTGCATCTCGACCGTTTGCA
AAACCATGTGCGGCGTAGCCGCGGGATGCACCAAAAGCAGCATCACCGCC
CACTTCGCCCTTGAGGGAAACATTGCTGATGTCTCCGCGAAGGAAAACGC
ACAAGAGACCGCCGTTACCCTCCTGGGGATATGCGGAGGCCTTTTCTTTG
CACAGTGGATTGCCAGTCCAACCGCGGCCTGGCCGGTGTTTTTGTTCTTG
ACGGCTTTGCATGTCTACGCTAATTACAAGGGAGTAGTTGCTCTACAGCT
TTTTTCTCTCAATACCCAACGAGCCTCCCTCCTCATCCACCACTTCCTCA
AACACGACGTACGCAGTAGATCTAGCAACGCTTCCTCCCATTCCCCTCCG
CCTTTCCTTCTCCTTACCCCCTCGCAAGTCAAAACCCGTGAGAAGGTCTA
CCAACCTCTCTGGAGCTGGCTCCTTGCCCAGCAGCCACTCATGGGCTGTC
GTGTCAGCGACCTCTCTCTCCCTTCCTCCTCACATCTCTCCTACCTGCTC
TTCCGTGTCTACACCCGCGAGAAATACCTCCTCTCCTTCTCCCCCTCCTC
CGGGCGGTTGCTCGTGGTCTTCCGTACAGGCGCCAGCCCTCAGGATGAGT
TGAAAGCGTTCTTCCAAGCACAGGCCATGCGTTTCCTCTACCCCGAGCTG
ACTCCGCGGAGGGCGAGAGAGGAGGCAGGGAAGGAGAGAGGGAGGGAAGC
GGCAGAGTGGCCATCACCGATGTTGATGAAGGCAGTACTAAAGAGTTATG
AAATGACTGTGCATCGTTTCCCTGTGTTTTGGGAGGCGTTGGTAGATGGA
GGGAGAAAAGAAGGGAAGGAGGGAGGGGGAAAAGAAAGGTGGGAGTTGAA
AAGGGTGAATTTGGGGACGGGGGGATGGAGGTTGATGTCGGGTGAGGAGG
AGCACAAGAAGAAGAGATGA
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Coding sequence (CDS) from alignment at scaffold_7:1148239..1149958-

>mRNA_3302 ID=mRNA_3302|Name=jgi.p|Nanoce1779_2|553943|organism=Nannochloropsis oceanica|type=CDS|length=3000bp|location=Sequence derived from alignment at scaffold_7:1148239..1149958- (Nannochloropsis oceanica)
ACTTCGGCCTCACCCTCGACATGCTCACGGGTCTTCCCATCTTCAAACCC
TCCTTTCTCCTCCTCACCTGCATCTCGACCGTTTGCAAAACCATGTGCGG
CGTAGCCGCGGGATGCACCAAAAGCAGCATCACCGCCCACTTCGCCCTTG
AGGGAAACATTGCTGATGTCTCCGCGAAGGAAAACGCACAAGAGACCGCC
GTTACCCTCCTGGGGATATGCGGAGGCCTTTTCTTTGCACAGTGGATTGC
CAGTCCAACCGCGGCCTGGCCGGTGTTTTTGTTCTTGACGGCTTTGCATG
TCTACGCTAATTACAAGGGAGTAGTTGCTCTACAGCTTTTTTCTCTCAAT
ACCCAACGAGCCTCCCTCCTCATCCACCACTTCCTCAAACACGACGTACG
CAGTAGATCTAGCAACGCTTCCTCCCATTCCCCTCCGCCTTTCCTTCTCC
TTACCCCCTCGCAAGTCAAAACCCGTGAGAAGGTCTACCAACCTCTCTGG
AGCTGGCTCCTTGCCCAGCAGCCACTCATGGGCTGTCGTGTCAGCGACCT
CTCTCTCCCTTCCTCCTCACATCTCTCCTACCTGCTCTTCCGTGTCTACA
CCCGCGAGAAATACCTCCTCTCCTTCTCCCCCTCCTCCGGGCGGTTGCTC
GTGGTCTTCCGTACAGGCGCCAGCCCTCAGGATGAGTTGAAAGCGTTCTT
CCAAGCACAGGCCATGCGTTTCCTCTACCCCGAGCTGACTCCGCGGAGGG
CGAGAGAGGAGGCAGGGAAGGAGAGAGGGAGGGAAGCGGCAGAGTGGCCA
TCACCGATGTTGATGAAGGCAGTACTAAAGAGTTATGAAATGACTGTGCA
TCGTTTCCCTGTGTTTTGGGAGGCGTTGGTAGATGGAGGGAGAAAAGAAG
GGAAGGAGGGAGGGGGAAAAGAAAGGTGGGAGTTGAAAAGGGTGAATTTG
GGGACGGGGGGATGGAGGTTGATGTCGGGTGAGGAGGAGCACAAGAAGAA
GAGATGAATGGCAGCGTGTCCCGACGAGTTTGACGTGGTTGCCACCGAGA
CCGACATCCACAACCCCCGTGCACACACCGCCCACTACTACCATGCCTCC
TCCACGTCACGTGTGCTTCTGCGCGACGACGCCCGGCACGGCCTCCTCTG
GCGCGCCTTGCTCGCCCCCCGCACCTTGCTCGCCTCGACGCTCCACGGAC
TGAGCGCCACATTTCTTCCTGTAGGATATCCACACAGCGTTCGGGAAGAG
TATCTGGTTTATCAAACTTGGGACACAATCCAGGCCCTGTGTAGCTACTT
GAGGGGAATTCTGACCACCAAAGCCATCTTGGAAGGAAGCGGGGTGGGCT
CTGAGACGGCCAGTGCGCTGTCGGCTGCCATGAATTGGGTGTTTCGGGAT
GGGGTGGGTATGTCCTCTTCCCTCTTGTTTTCCTCGCTCGCCTCGATGAG
CTTTGACGGAAACGTCAAGGAGTGGCGGCTCTTTGCCGACATTGCAAATG
ACTTCGGCCTCACCCTCGACATGCTCACGGGTCTTCCCATCTTCAAACCC
TCCTTTCTCCTCCTCACCTGCATCTCGACCGTTTGCAAAACCATGTGCGG
CGTAGCCGCGGGATGCACCAAAAGCAGCATCACCGCCCACTTCGCCCTTG
AGGGAAACATTGCTGATGTCTCCGCGAAGGAAAACGCACAAGAGACCGCC
GTTACCCTCCTGGGGATATGCGGAGGCCTTTTCTTTGCACAGTGGATTGC
CAGTCCAACCGCGGCCTGGCCGGTGTTTTTGTTCTTGACGGCTTTGCATG
TCTACGCTAATTACAAGGGAGTAGTTGCTCTACAGCTTTTTTCTCTCAAT
ACCCAACGAGCCTCCCTCCTCATCCACCACTTCCTCAAACACGACGTACG
CAGTAGATCTAGCAACGCTTCCTCCCATTCCCCTCCGCCTTTCCTTCTCC
TTACCCCCTCGCAAGTCAAAACCCGTGAGAAGGTCTACCAACCTCTCTGG
AGCTGGCTCCTTGCCCAGCAGCCACTCATGGGCTGTCGTGTCAGCGACCT
CTCTCTCCCTTCCTCCTCACATCTCTCCTACCTGCTCTTCCGTGTCTACA
CCCGCGAGAAATACCTCCTCTCCTTCTCCCCCTCCTCCGGGCGGTTGCTC
GTGGTCTTCCGTACAGGCGCCAGCCCTCAGGATGAGTTGAAAGCGTTCTT
CCAAGCACAGGCCATGCGTTTCCTCTACCCCGAGCTGACTCCGCGGAGGG
CGAGAGAGGAGGCAGGGAAGGAGAGAGGGAGGGAAGCGGCAGAGTGGCCA
TCACCGATGTTGATGAAGGCAGTACTAAAGAGTTATGAAATGACTGTGCA
TCGTTTCCCTGTGTTTTGGGAGGCGTTGGTAGATGGAGGGAGAAAAGAAG
GGAAGGAGGGAGGGGGAAAAGAAAGGTGGGAGTTGAAAAGGGTGAATTTG
GGGACGGGGGGATGGAGGTTGATGTCGGGTGAGGAGGAGCACAAGAAGAA
GAGATGAATGGCAGCGTGTCCCGACGAGTTTGACGTGGTTGCCACCGAGA
CCGACATCCACAACCCCCGTGCACACACCGCCCACTACTACCATGCCTCC
TCCACGTCACGTGTGCTTCTGCGCGACGACGCCCGGCACGGCCTCCTCTG
GCGCGCCTTGCTCGCCCCCCGCACCTTGCTCGCCTCGACGCTCCACGGAC
TGAGCGCCACATTTCTTCCTGTAGGATATCCACACAGCGTTCGGGAAGAG
TATCTGGTTTATCAAACTTGGGACACAATCCAGGCCCTGTGTAGCTACTT
GAGGGGAATTCTGACCACCAAAGCCATCTTGGAAGGAAGCGGGGTGGGCT
CTGAGACGGCCAGTGCGCTGTCGGCTGCCATGAATTGGGTGTTTCGGGAT
GGGGTGGGTATGTCCTCTTCCCTCTTGTTTTCCTCGCTCGCCTCGATGAG
CTTTGACGGAAACGTCAAGGAGTGGCGGCTCTTTGCCGACATTGCAAATG
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Synonyms
Publications