jgi.p|Nanoce1779_2|584692, mRNA_3137 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584692
Unique NamemRNA_3137
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1011
Alignment locationscaffold_7:744427..745437 +

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Properties
Property NameValue
TranscriptId584778
TrackFilteredModels2
ProteinId584692
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:744427..745437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584692gene_3137Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584692mRNA_3137-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3137CDS_3137Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3137 ID=mRNA_3137|Name=jgi.p|Nanoce1779_2|584692|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp
CCGCCTCCTTCCCCTCCTCCTCCTCTAGCAGCCGTCGACCTCCTCATATC
AGCAAGAAGACCAACAAAGGCAACAAATACAGCTCTCGCGGTGCATCTCT
GTTTAACGACGCCTACGACCAAGTCAAATTCTCAGAAGGCGGGGACCTCG
CCCTCCGGGTATTTGAAAAGATGAATCGAGGCACAGATAAAGCCCGTTAT
TGGGCTACTTATGCAAAGGGCATGGCCCGCGACGCCATTATCGCTGCCTC
TCTCAACGAACAAGACGCTGATCGCCGCACCCATCAAAAGAAGAGCGGGA
AAACAAGTGCATTGCAGCAGAAATCGAGGAAGTTGTTAGGGCCGCGAGGG
AGAGGGTGGTCGAAGCTGATGGGGCATGTGACGCGGGCATGGGCGGAGAG
TGCGTGGCAAGTGGTCATGGCCTTGGCGAGCTGGGCGGGAGGAGGTCTAC
TGCCGGGGCGATACGTTCTGTTGGGCGCAGGGGTGTTCGCAATGCTATTG
AGGCAGGGAGTTGGGACGTTTTTCGCGGCCTTGTTGGTAGTGCGGACGTG
CTCGAGTACGTTGAGGAATATGATTGAGGATGATGAGGATGAAGGGATGG
AGGGAGCGATGGGGGTAGGGTTTTGATGGGGCAGGGGGTTGGGATGTATT
GCACAGCCTTGTTGGTAGTGCGGACGAACTCGAGTACGTTGAGGAATGTG
ATTAAGGATGAGGAGGAGGAAGGGGGGAGGGAGGAGGGGAGAGAGGAAAC
GGTTGGGGAGAGGAGGGATTTTTGAGAAACAAGGGTGGATGTACAAAGAT
GTTTCTAACAACCATTTCCATCTTCTGTTTGATAACTTGTCATGTTTAGT
TTCCAGAGTCAAAGGATGAGATAAAGAAGCATTTAGAGTAAATTATACAA
TTAGCGTACAGAATCTTCTACTTTTGCCTCCCAATTTTATTCATCAACGA
ATAGTTGTCTAAACATGCTTTTTAAAAATATTACTCGCTTTTTTCTTCCC
CTTCCTCCTCC
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protein sequence of jgi.p|Nanoce1779_2|584692

>mRNA_3137-protein ID=mRNA_3137-protein|Name=jgi.p|Nanoce1779_2|584692|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MNRGTDKARYWATYAKGMARDAIIAASLNEQDADRRTHQKKSGKTSALQQ
KSRKLLGPRGRGWSKLMGHVTRAWAESAWQVVMALASWAGGGLLPGRYVL
LGAGVFAMLLRQGVGTFFAALLVVRTCSSTLRNMIEDDEDEGMEGAMGVG
F*
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mRNA from alignment at scaffold_7:744427..745437+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3137 ID=mRNA_3137|Name=jgi.p|Nanoce1779_2|584692|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp|location=Sequence derived from alignment at scaffold_7:744427..745437+ (Nannochloropsis oceanica)
CCGCCTCCTTCCCCTCCTCCTCCTCTAGCAGCCGTCGACCTCCTCATATC
AGCAAGAAGACCAACAAAGGCAACAAATACAGCTCTCGCGGTGCATCTCT
GTTTAACGACGCCTACGACCAAGTCAAATTCTCAGAAGGCGGGGACCTCG
CCCTCCGGGTATTTGAAAAGATGAATCGAGGCACAGATAAAGCCCGTTAT
TGGGCTACTTATGCAAAGGGCATGGCCCGCGACGCCATTATCGCTGCCTC
TCTCAACGAACAAGACGCTGATCGCCGCACCCATCAAAAGAAGAGCGGGA
AAACAAGTGCATTGCAGCAGAAATCGAGGAAGTTGTTAGGGCCGCGAGGG
AGAGGGTGGTCGAAGCTGATGGGGCATGTGACGCGGGCATGGGCGGAGAG
TGCGTGGCAAGTGGTCATGGCCTTGGCGAGCTGGGCGGGAGGAGGTCTAC
TGCCGGGGCGATACGTTCTGTTGGGCGCAGGGGTGTTCGCAATGCTATTG
AGGCAGGGAGTTGGGACGTTTTTCGCGGCCTTGTTGGTAGTGCGGACGTG
CTCGAGTACGTTGAGGAATATGATTGAGGATGATGAGGATGAAGGGATGG
AGGGAGCGATGGGGGTAGGGTTTTGATGGGGCAGGGGGTTGGGATGTATT
GCACAGCCTTGTTGGTAGTGCGGACGAACTCGAGTACGTTGAGGAATGTG
ATTAAGGATGAGGAGGAGGAAGGGGGGAGGGAGGAGGGGAGAGAGGAAAC
GGTTGGGGAGAGGAGGGATTTTTGAGAAACAAGGGTGGATGTACAAAGAT
GTTTCTAACAACCATTTCCATCTTCTGTTTGATAACTTGTCATGTTTAGT
TTCCAGAGTCAAAGGATGAGATAAAGAAGCATTTAGAGTAAATTATACAA
TTAGCGTACAGAATCTTCTACTTTTGCCTCCCAATTTTATTCATCAACGA
ATAGTTGTCTAAACATGCTTTTTAAAAATATTACTCGCTTTTTTCTTCCC
CTTCCTCCTCC
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Coding sequence (CDS) from alignment at scaffold_7:744427..745437+

>mRNA_3137 ID=mRNA_3137|Name=jgi.p|Nanoce1779_2|584692|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_7:744427..745437+ (Nannochloropsis oceanica)
ATGAATCGAGGCACAGATAAAGCCCGTTATTGGGCTACTTATGCAAAGGG
CATGGCCCGCGACGCCATTATCGCTGCCTCTCTCAACGAACAAGACGCTG
ATCGCCGCACCCATCAAAAGAAGAGCGGGAAAACAAGTGCATTGCAGCAG
AAATCGAGGAAGTTGTTAGGGCCGCGAGGGAGAGGGTGGTCGAAGCTGAT
GGGGCATGTGACGCGGGCATGGGCGGAGAGTGCGTGGCAAGTGGTCATGG
CCTTGGCGAGCTGGGCGGGAGGAGGTCTACTGCCGGGGCGATACGTTCTG
TTGGGCGCAGGGGTGTTCGCAATGCTATTGAGGCAGGGAGTTGGGACGTT
TTTCGCGGCCTTGTTGGTAGTGCGGACGTGCTCGAGTACGTTGAGGAATA
TGATTGAGGATGATGAGGATGAAGGGATGGAGGGAGCGATGGGGGTAGGG
TTTTGA
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Synonyms
Publications