jgi.p|Nanoce1779_2|584964, mRNA_3220 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584964
Unique NamemRNA_3220
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1454
Alignment locationscaffold_7:941856..943309 -

Link to JBrowse

Properties
Property NameValue
TranscriptId585050
TrackFilteredModels2
ProteinId584964
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:941856..943309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584964gene_3220Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584964mRNA_3220-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3220CDS_3220Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3220 ID=mRNA_3220|Name=jgi.p|Nanoce1779_2|584964|organism=Nannochloropsis oceanica|type=mRNA|length=1454bp
AGGTCTTTTAATGTTGAGTAACACTGTCATTGAGAAGGAGCTGCTATCCT
TCGCCATAAAGCACTCGCCCGAGGGGACCTTGCGTGTGGATGCCCTACGG
CGTGTCGTTGATGCCGCCAACCTCGTCCATGCCACCGAACATATGCGGTA
TCTAATTTTAAAGGACGCTCGAATGCCTGGTAGTTTTGCCGAGCTTGACC
ACACTAGCCCTATTGGCAGTAAATTGAAAGGAGAGGCGCGTAAACTCTGC
AGGGACCTCAAGGTGACAAGTTTTAGTGATGTCCGGCTTTTGAATGGAGT
CACTGAGATTGAAGCCACTGTACAGTTGAATTCCTGTGAGTTGCACTTTA
GATTTAAACGGCAGCCCCAAGTCAATGGCACGTCAATGCCGCGACATGGT
ATAATGACAGAAGGGGTACCGGCCTGGATTGACTTAAACGGGGAGGAGGA
TGGCGAGGACGACCAGAAAGAGGAGGAGAAAAAGCACACAGCTATCTCCC
CATCGTTCAAAAAGAAACCAACAACACTGGTTGAATACACCATCAGCACC
ACCAACATCACCACTCCAGCGAATCCACGCAATAACCGTAGCATCCTCGT
TCAGGTCTTGCTGTGTGGTTTCCACCCTTCAGGTATGCCCAGCCCTCTTG
GGGTCATTGATCCGACCGATGACGAGAAAGAAGGGAAAGCGGAGGACGAT
GTAGGGCAGCAGAAAGATATTTGCACGGTTGCAATGTGCGATTACACATT
GAGACGGGCAATGAGGTGGTGCGGGACGAAGCTAACTATGCCTGATTTTT
TGTCATTCTTGTTCCTCTTTCCCTACCATGAGGAGGAATGGGACATTGGT
AATTTGGCGCTAGACCAGCTTTTGGACGTGGTGGAAGGAAGCGGGGATGA
AAACGGAAGCGGGGATGAAAATGGAGATGCAGAGGGGGAGGAGATCGATT
GGGACTATGAGAGCGAGAGATCAGAGGATGAGATCGATTGGGATTATGAG
CAGGCTCCATCTCCCCCGCCAGCGTCCGCCGCCAAGAAGGAGAAGAGAAA
GCGAGAACACGAGCAGAGCAAAAATGACAAGCAAGAAAAGGGCATCAATG
AATGCAAATATGAAAGATAAATGGACTCAATATAAGGAAGCTACATGTGG
ATCAAATGGGAACAAGGAATGCTTTACAAGAAGCAATTTCTGTCACAGAT
AGAGAAGGCCTACTCGCTTTCATCTCATTGGTTTCAATGATGAGGGAGGA
CCATTCACTTCTAGAATTTTCCGCACCAACAAGAGAACGGCAAAGCCCCT
TCCCGGACGTCCCCCCACGCGCCCTATTTTGAGCCGGGTCCAGATACACA
GAAACGCAACACACCACAAAGAAGACATCACAGCCGACAACCTAGAGAAC
ACCCCGTATTTTGGTTTTGGAACCCCGAATAGGGGGTGTGTTCAACTCCG
CACC
back to top

protein sequence of jgi.p|Nanoce1779_2|584964

>mRNA_3220-protein ID=mRNA_3220-protein|Name=jgi.p|Nanoce1779_2|584964|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MLSNTVIEKELLSFAIKHSPEGTLRVDALRRVVDAANLVHATEHMRYLIL
KDARMPGSFAELDHTSPIGSKLKGEARKLCRDLKVTSFSDVRLLNGVTEI
EATVQLNSCELHFRFKRQPQVNGTSMPRHGIMTEGVPAWIDLNGEEDGED
DQKEEEKKHTAISPSFKKKPTTLVEYTISTTNITTPANPRNNRSILVQVL
LCGFHPSGMPSPLGVIDPTDDEKEGKAEDDVGQQKDICTVAMCDYTLRRA
MRWCGTKLTMPDFLSFLFLFPYHEEEWDIGNLALDQLLDVVEGSGDENGS
GDENGDAEGEEIDWDYESERSEDEIDWDYEQAPSPPPASAAKKEKRKREH
EQSKNDKQEKGINECKYER*
back to top

mRNA from alignment at scaffold_7:941856..943309-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3220 ID=mRNA_3220|Name=jgi.p|Nanoce1779_2|584964|organism=Nannochloropsis oceanica|type=mRNA|length=1454bp|location=Sequence derived from alignment at scaffold_7:941856..943309- (Nannochloropsis oceanica)
AGGTCTTTTAATGTTGAGTAACACTGTCATTGAGAAGGAGCTGCTATCCT
TCGCCATAAAGCACTCGCCCGAGGGGACCTTGCGTGTGGATGCCCTACGG
CGTGTCGTTGATGCCGCCAACCTCGTCCATGCCACCGAACATATGCGGTA
TCTAATTTTAAAGGACGCTCGAATGCCTGGTAGTTTTGCCGAGCTTGACC
ACACTAGCCCTATTGGCAGTAAATTGAAAGGAGAGGCGCGTAAACTCTGC
AGGGACCTCAAGGTGACAAGTTTTAGTGATGTCCGGCTTTTGAATGGAGT
CACTGAGATTGAAGCCACTGTACAGTTGAATTCCTGTGAGTTGCACTTTA
GATTTAAACGGCAGCCCCAAGTCAATGGCACGTCAATGCCGCGACATGGT
ATAATGACAGAAGGGGTACCGGCCTGGATTGACTTAAACGGGGAGGAGGA
TGGCGAGGACGACCAGAAAGAGGAGGAGAAAAAGCACACAGCTATCTCCC
CATCGTTCAAAAAGAAACCAACAACACTGGTTGAATACACCATCAGCACC
ACCAACATCACCACTCCAGCGAATCCACGCAATAACCGTAGCATCCTCGT
TCAGGTCTTGCTGTGTGGTTTCCACCCTTCAGGTATGCCCAGCCCTCTTG
GGGTCATTGATCCGACCGATGACGAGAAAGAAGGGAAAGCGGAGGACGAT
GTAGGGCAGCAGAAAGATATTTGCACGGTTGCAATGTGCGATTACACATT
GAGACGGGCAATGAGGTGGTGCGGGACGAAGCTAACTATGCCTGATTTTT
TGTCATTCTTGTTCCTCTTTCCCTACCATGAGGAGGAATGGGACATTGGT
AATTTGGCGCTAGACCAGCTTTTGGACGTGGTGGAAGGAAGCGGGGATGA
AAACGGAAGCGGGGATGAAAATGGAGATGCAGAGGGGGAGGAGATCGATT
GGGACTATGAGAGCGAGAGATCAGAGGATGAGATCGATTGGGATTATGAG
CAGGCTCCATCTCCCCCGCCAGCGTCCGCCGCCAAGAAGGAGAAGAGAAA
GCGAGAACACGAGCAGAGCAAAAATGACAAGCAAGAAAAGGGCATCAATG
AATGCAAATATGAAAGATAAATGGACTCAATATAAGGAAGCTACATGTGG
ATCAAATGGGAACAAGGAATGCTTTACAAGAAGCAATTTCTGTCACAGAT
AGAGAAGGCCTACTCGCTTTCATCTCATTGGTTTCAATGATGAGGGAGGA
CCATTCACTTCTAGAATTTTCCGCACCAACAAGAGAACGGCAAAGCCCCT
TCCCGGACGTCCCCCCACGCGCCCTATTTTGAGCCGGGTCCAGATACACA
GAAACGCAACACACCACAAAGAAGACATCACAGCCGACAACCTAGAGAAC
ACCCCGTATTTTGGTTTTGGAACCCCGAATAGGGGGTGTGTTCAACTCCG
CACC
back to top

Coding sequence (CDS) from alignment at scaffold_7:941856..943309-

>mRNA_3220 ID=mRNA_3220|Name=jgi.p|Nanoce1779_2|584964|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_7:941856..943309- (Nannochloropsis oceanica)
ATGTTGAGTAACACTGTCATTGAGAAGGAGCTGCTATCCTTCGCCATAAA
GCACTCGCCCGAGGGGACCTTGCGTGTGGATGCCCTACGGCGTGTCGTTG
ATGCCGCCAACCTCGTCCATGCCACCGAACATATGCGGTATCTAATTTTA
AAGGACGCTCGAATGCCTGGTAGTTTTGCCGAGCTTGACCACACTAGCCC
TATTGGCAGTAAATTGAAAGGAGAGGCGCGTAAACTCTGCAGGGACCTCA
AGGTGACAAGTTTTAGTGATGTCCGGCTTTTGAATGGAGTCACTGAGATT
GAAGCCACTGTACAGTTGAATTCCTGTGAGTTGCACTTTAGATTTAAACG
GCAGCCCCAAGTCAATGGCACGTCAATGCCGCGACATGGTATAATGACAG
AAGGGGTACCGGCCTGGATTGACTTAAACGGGGAGGAGGATGGCGAGGAC
GACCAGAAAGAGGAGGAGAAAAAGCACACAGCTATCTCCCCATCGTTCAA
AAAGAAACCAACAACACTGGTTGAATACACCATCAGCACCACCAACATCA
CCACTCCAGCGAATCCACGCAATAACCGTAGCATCCTCGTTCAGGTCTTG
CTGTGTGGTTTCCACCCTTCAGGTATGCCCAGCCCTCTTGGGGTCATTGA
TCCGACCGATGACGAGAAAGAAGGGAAAGCGGAGGACGATGTAGGGCAGC
AGAAAGATATTTGCACGGTTGCAATGTGCGATTACACATTGAGACGGGCA
ATGAGGTGGTGCGGGACGAAGCTAACTATGCCTGATTTTTTGTCATTCTT
GTTCCTCTTTCCCTACCATGAGGAGGAATGGGACATTGGTAATTTGGCGC
TAGACCAGCTTTTGGACGTGGTGGAAGGAAGCGGGGATGAAAACGGAAGC
GGGGATGAAAATGGAGATGCAGAGGGGGAGGAGATCGATTGGGACTATGA
GAGCGAGAGATCAGAGGATGAGATCGATTGGGATTATGAGCAGGCTCCAT
CTCCCCCGCCAGCGTCCGCCGCCAAGAAGGAGAAGAGAAAGCGAGAACAC
GAGCAGAGCAAAAATGACAAGCAAGAAAAGGGCATCAATGAATGCAAATA
TGAAAGATAA
back to top
Synonyms
Publications