jgi.p|Nanoce1779_2|613487, mRNA_11549 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613487
Unique NamemRNA_11549
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length385
Alignment locationscaffold_75:19216..19600 +

Link to JBrowse

Properties
Property NameValue
TranscriptId613573
TrackFilteredModels2
ProteinId613487
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_75supercontigscaffold_75:19216..19600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613487gene_11549Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613487mRNA_11549-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11549CDS_11549Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11549 ID=mRNA_11549|Name=jgi.p|Nanoce1779_2|613487|organism=Nannochloropsis oceanica|type=mRNA|length=385bp
GTGGTGGTGCTGGTGAGTCCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGC
TGTTGCTGCTGCTGCTGATGAGATAGATGTTTGTCGTACTGCTGCTGCTG
CTGCTGCTTCATCTCCTCTTTTTCTTCCGCAGCGGGGGAAGGAGAGGCAA
TGGGGAGAGGGAGAGATGGAGGGAGAAATTTACTGCTGCCGTCCTTGTTG
CTGTCAATAGCGAGGGGAAGGAAGGAGGGAGGGGGGGCTGCAGGCTCCTC
ATCTTTCCCCTTCACCTCTGCTTTGGCAGCTGTTGGTGAGGGTCGTGAGG
GGGGGAAGGAGGGAGGGGAGGCTGGTGGTGGAGGATGGGGGGAGGAGGGA
GGAAGAGGAGGGGAAGAGGGATCGACCTTCATTTT
back to top

protein sequence of jgi.p|Nanoce1779_2|613487

>mRNA_11549-protein ID=mRNA_11549-protein|Name=jgi.p|Nanoce1779_2|613487|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MFVVLLLLLLLHLLFFFRSGGRRGNGERERWREKFTAAVLVAVNSEGKEG
GRGGCRLLIFPLHLCFGSCW*
back to top

mRNA from alignment at scaffold_75:19216..19600+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11549 ID=mRNA_11549|Name=jgi.p|Nanoce1779_2|613487|organism=Nannochloropsis oceanica|type=mRNA|length=385bp|location=Sequence derived from alignment at scaffold_75:19216..19600+ (Nannochloropsis oceanica)
GTGGTGGTGCTGGTGAGTCCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGC
TGTTGCTGCTGCTGCTGATGAGATAGATGTTTGTCGTACTGCTGCTGCTG
CTGCTGCTTCATCTCCTCTTTTTCTTCCGCAGCGGGGGAAGGAGAGGCAA
TGGGGAGAGGGAGAGATGGAGGGAGAAATTTACTGCTGCCGTCCTTGTTG
CTGTCAATAGCGAGGGGAAGGAAGGAGGGAGGGGGGGCTGCAGGCTCCTC
ATCTTTCCCCTTCACCTCTGCTTTGGCAGCTGTTGGTGAGGGTCGTGAGG
GGGGGAAGGAGGGAGGGGAGGCTGGTGGTGGAGGATGGGGGGAGGAGGGA
GGAAGAGGAGGGGAAGAGGGATCGACCTTCATTTT
back to top

Coding sequence (CDS) from alignment at scaffold_75:19216..19600+

>mRNA_11549 ID=mRNA_11549|Name=jgi.p|Nanoce1779_2|613487|organism=Nannochloropsis oceanica|type=CDS|length=213bp|location=Sequence derived from alignment at scaffold_75:19216..19600+ (Nannochloropsis oceanica)
ATGTTTGTCGTACTGCTGCTGCTGCTGCTGCTTCATCTCCTCTTTTTCTT
CCGCAGCGGGGGAAGGAGAGGCAATGGGGAGAGGGAGAGATGGAGGGAGA
AATTTACTGCTGCCGTCCTTGTTGCTGTCAATAGCGAGGGGAAGGAAGGA
GGGAGGGGGGGCTGCAGGCTCCTCATCTTTCCCCTTCACCTCTGCTTTGG
CAGCTGTTGGTGA
back to top
Synonyms
Publications