jgi.p|Nanoce1779_2|415353, mRNA_3824 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|415353
Unique NamemRNA_3824
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1126
Alignment locationscaffold_8:123522..125371 -

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Properties
Property NameValue
TranscriptId415439
TrackFilteredModels2
ProteinId415353
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:123522..125371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|415353gene_3824Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|415353mRNA_3824-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3824CDS_3824Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3824 ID=mRNA_3824|Name=jgi.p|Nanoce1779_2|415353|organism=Nannochloropsis oceanica|type=mRNA|length=1126bp
ATTACTGCCACCTGTACGTATATATCACCCTTATCGCCACTCACGCAAGA
CAATCAGACATAAACTTCTGCCTACCCTCATCATGGTGTCTGGGGCCGCC
AAGAAAAAAAAGAAGAGGGCCAACGCCGCCGCTGCCTCAGCCTCCTCCAC
CTCTCCCTCCGTTCCGACCTCCTCTCTCCTGGTGGCAGTGCACGCCCGCC
TGGCCCGGGAGCTCCAAGAAAGGCATGACATCGTCCTCGTCCACACGGAG
GAGAAGGGACGATGTTGCCTTGCCCCACCGCAAGGTTTCGAGCCGGGCCG
ATTGCTGATCGAGGAGGACGCATACATATGGGGCAACGGCGAGGACGACT
GGTGCCTGGAGTGCGACGACCCAAGCCACGCTAGCTCCTCGTGTCCTCGT
GTCCTGTCCACCTACCCTCCCTCCCTCCCCCCCTTGCTGCCAGCGATTGA
AAAATGGATGGAGGAGAGGCTGGAAAGGGTCCAGACATTGGATAGGGCGA
GGGCATGGATTAAGGCATTGGTTCGTCTCCAGCAAGAAGGAAGGGAAGGA
GGGGAGGAAGGAGGGGAGGAGGGCGGGCGATGGCTTGACCCGCTCTTGGC
GTTGACGGCGTGCAACATAGACGGTTGTGTTAAGGATGCCCAAAAGCTGG
CGAAAAAGTACCCTTTCCTCCTCCCTCCCTCCTCCTCCCCCTCCTCCTCC
GTCGCCCTTGCCGCCCGCCTCCTCTCCCTCCTCAATACCAATTCCCACGA
GCTGGAGGAACTTGGTCCGGGCTCCGGTCTCTTCCTTCGGGCCTGCCTCC
TTGAACACTCCTGCATGCCCAACTGCGCCTTTGCGTAGAACGTACGGCAC
GAGGCTGCGGCTGGTGACACTGACGGCCATCGAGCCCCACGCCCCCCTTT
CGATCGACTATGCGAATTTGTACTACTCCCCAGTCGCTGCCCGAAGGCGG
GTCCTCGAGGAGACTTATGGCTTCACCTGCAGCTGCCCTGCCTGCAGGGG
CGACGCCCCAGATCGCTCGCGCGCCTTCACCTGCCCCTCCTCCTCCTCTC
CTCCCTTGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGTGAGGGA
GGGGTGGTTTGTCCCTTTGGCGATGA
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protein sequence of jgi.p|Nanoce1779_2|415353

>mRNA_3824-protein ID=mRNA_3824-protein|Name=jgi.p|Nanoce1779_2|415353|organism=Nannochloropsis oceanica|type=polypeptide|length=252bp
MVSGAAKKKKKRANAAAASASSTSPSVPTSSLLVAVHARLARELQERHDI
VLVHTEEKGRCCLAPPQGFEPGRLLIEEDAYIWGNGEDDWCLECDDPSHA
SSSCPRVLSTYPPSLPPLLPAIEKWMEERLERVQTLDRARAWIKALVRLQ
QEGREGGEEGGEEGGRWLDPLLALTACNIDGCVKDAQKLAKKYPFLLPPS
SSPSSSVALAARLLSLLNTNSHELEELGPGSGLFLRACLLEHSCMPNCAF
A*
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mRNA from alignment at scaffold_8:123522..125371-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3824 ID=mRNA_3824|Name=jgi.p|Nanoce1779_2|415353|organism=Nannochloropsis oceanica|type=mRNA|length=1850bp|location=Sequence derived from alignment at scaffold_8:123522..125371- (Nannochloropsis oceanica)
ATTACTGCCACCTGTACGTATATATCACCCTTATCGCCACTCACGCAAGA
CAATCAGACATAAACTTCTGCCTACCCTCATCATGGTGTCTGGGGCCGCC
AAGAAAAAAAAGAAGAGGGCCAACGCCGCCGCTGCCTCAGCCTCCTCCAC
CTCTCCCTCCGTTCCGACCTCCTCTCTCCTGGTGGCAGTGCACGCCCGCC
TGGCCCGGGAGCTCCAAGAAAGGCATGACATCGTCCTCGTCCACACGGAG
GAGAAGGGACGATGTTGCCTTGCCCCACCGCAAGGTTTCGAGCCGGGCCG
ATTGCTGATCGAGGAGGACGCATACATGTAGGTGTATATGGCCGTCTGGC
GTAGGACGTGTCTTCAGAGCGCCTTGGACGGCGAAGAAACAAGTAGGATT
ACATATAGACTGAAAGAAGTACGATTACCATGGCACTAATTAAATATCAC
CTTTTCCCCTTTCCCCCTTCCCATTTAGATGGGGCAACGGCGAGGACGAC
TGGTGCCTGGAGTGCGACGACCCAAGCCACGCTAGCTCCTCGTGTCCTCG
TGTCCTGTCCACCTACCCTCCCTCCCTCCCCCCCTTGCTGCCAGCGATTG
AAAAATGGATGGAGGAGAGGCTGGAAAGGGTCCAGACATTGGATAGGGCG
AGGGCATGGATTAAGGTTGAAGGGAGGGAGGGAGGGAGGGAGGGAGCGAG
AGGAGTGGCCGTAGGGAACGAATCTGAAGGGGGCAAGGAAAGCCATGGGT
GCACTAGCAAGCCTTATTTCATGACATGCACACATACCCGCACAGGCATT
GGTTCGTCTCCAGCAAGAAGGAAGGGAAGGAGGGGAGGAAGGAGGGGAGG
AGGGCGGGCGATGGCTTGACCCGCTCTTGGCGTTGACGGCGTGCAACATA
GACGGTTGTGTTAAGGATGCCCAAAAGCTGGCGAAAAAGTAAGGAATAGG
GGAGGGAGGGAGGGAGGGAGGGAATGTTTTAAGCAACGAGCCGATCCATC
CTTTTTTCCCCTCGTCCTCATTCTCACCTTCTTATCCAGGTACCCTTTCC
TCCTCCCTCCCTCCTCCTCCCCCTCCTCCTCCGTCGCCCTTGCCGCCCGC
CTCCTCTCCCTCCTCAATACCAATTCCCACGAGCTGGAGGAACTTGGTCC
GGGCTCCGGTCTCTTCCTTCGGGCCTGCCTCCTTGAACACTCCTGCATGC
CCAACTGCGCCTTTGCGTAGGTCGCCGTCCGTCCCTCCCTCCCTTCCTTC
CTCCCTCAGTCTCTTCAGGGAGGGAAGGACAGATGACTTTCTCACACTTC
TACCTGCACTCGCACTCACATGCCCATACCCCTACACACAGAACGTACGG
CACGAGGCTGCGGCTGGTGACACTGACGGCCATCGAGCCCCACGCCCCCC
TTTCGATCGACTATGCGAATTTGTACTACTCCCCAGGTCAGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGGCCAGG
GAGACTGCGACGACGGTTTTGTGTCTATTCGTGCAGTCGATGGAAAGGAG
TGCGCGAGTCTGTGTCTAACTCTTCCTGTCTTCATCCCGTCCTTCCTTCT
TCCCCCTCCTCCCTCCTTCCCTCCCTCCGTCTCTCCCTCCCTCCCTCTTC
ATCCAAGTCGCTGCCCGAAGGCGGGTCCTCGAGGAGACTTATGGCTTCAC
CTGCAGCTGCCCTGCCTGCAGGGGCGACGCCCCAGATCGCTCGCGCGCCT
TCACCTGCCCCTCCTCCTCCTCTCCTCCCTTGGAAGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGTGTGAGGGAGGGGTGGTTTGTCCCTTTGGCGATGA
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Coding sequence (CDS) from alignment at scaffold_8:123522..125371-

>mRNA_3824 ID=mRNA_3824|Name=jgi.p|Nanoce1779_2|415353|organism=Nannochloropsis oceanica|type=CDS|length=3024bp|location=Sequence derived from alignment at scaffold_8:123522..125371- (Nannochloropsis oceanica)
GTACCCTTTCCTCCTCCCTCCCTCCTCCTCCCCCTCCTCCTCCGTCGCCC
TTGCCGCCCGCCTCCTCTCCCTCCTCAATACCAATTCCCACGAGCTGGAG
GAACTTGGTCCGGGCTCCGGTCTCTTCCTTCGGGCCTGCCTCCTTGAACA
CTCCTGCATGCCCAACTGCGCCTTTGCGTAGGCATTGGTTCGTCTCCAGC
AAGAAGGAAGGGAAGGAGGGGAGGAAGGAGGGGAGGAGGGCGGGCGATGG
CTTGACCCGCTCTTGGCGTTGACGGCGTGCAACATAGACGGTTGTGTTAA
GGATGCCCAAAAGCTGGCGAAAAAATGGGGCAACGGCGAGGACGACTGGT
GCCTGGAGTGCGACGACCCAAGCCACGCTAGCTCCTCGTGTCCTCGTGTC
CTGTCCACCTACCCTCCCTCCCTCCCCCCCTTGCTGCCAGCGATTGAAAA
ATGGATGGAGGAGAGGCTGGAAAGGGTCCAGACATTGGATAGGGCGAGGG
CATGGATTAAGATGGTGTCTGGGGCCGCCAAGAAAAAAAAGAAGAGGGCC
AACGCCGCCGCTGCCTCAGCCTCCTCCACCTCTCCCTCCGTTCCGACCTC
CTCTCTCCTGGTGGCAGTGCACGCCCGCCTGGCCCGGGAGCTCCAAGAAA
GGCATGACATCGTCCTCGTCCACACGGAGGAGAAGGGACGATGTTGCCTT
GCCCCACCGCAAGGTTTCGAGCCGGGCCGATTGCTGATCGAGGAGGACGC
ATACATGTACCCTTTCCTCCTCCCTCCCTCCTCCTCCCCCTCCTCCTCCG
TCGCCCTTGCCGCCCGCCTCCTCTCCCTCCTCAATACCAATTCCCACGAG
CTGGAGGAACTTGGTCCGGGCTCCGGTCTCTTCCTTCGGGCCTGCCTCCT
TGAACACTCCTGCATGCCCAACTGCGCCTTTGCGTAGGCATTGGTTCGTC
TCCAGCAAGAAGGAAGGGAAGGAGGGGAGGAAGGAGGGGAGGAGGGCGGG
CGATGGCTTGACCCGCTCTTGGCGTTGACGGCGTGCAACATAGACGGTTG
TGTTAAGGATGCCCAAAAGCTGGCGAAAAAATGGGGCAACGGCGAGGACG
ACTGGTGCCTGGAGTGCGACGACCCAAGCCACGCTAGCTCCTCGTGTCCT
CGTGTCCTGTCCACCTACCCTCCCTCCCTCCCCCCCTTGCTGCCAGCGAT
TGAAAAATGGATGGAGGAGAGGCTGGAAAGGGTCCAGACATTGGATAGGG
CGAGGGCATGGATTAAGATGGTGTCTGGGGCCGCCAAGAAAAAAAAGAAG
AGGGCCAACGCCGCCGCTGCCTCAGCCTCCTCCACCTCTCCCTCCGTTCC
GACCTCCTCTCTCCTGGTGGCAGTGCACGCCCGCCTGGCCCGGGAGCTCC
AAGAAAGGCATGACATCGTCCTCGTCCACACGGAGGAGAAGGGACGATGT
TGCCTTGCCCCACCGCAAGGTTTCGAGCCGGGCCGATTGCTGATCGAGGA
GGACGCATACATGTACCCTTTCCTCCTCCCTCCCTCCTCCTCCCCCTCCT
CCTCCGTCGCCCTTGCCGCCCGCCTCCTCTCCCTCCTCAATACCAATTCC
CACGAGCTGGAGGAACTTGGTCCGGGCTCCGGTCTCTTCCTTCGGGCCTG
CCTCCTTGAACACTCCTGCATGCCCAACTGCGCCTTTGCGTAGGCATTGG
TTCGTCTCCAGCAAGAAGGAAGGGAAGGAGGGGAGGAAGGAGGGGAGGAG
GGCGGGCGATGGCTTGACCCGCTCTTGGCGTTGACGGCGTGCAACATAGA
CGGTTGTGTTAAGGATGCCCAAAAGCTGGCGAAAAAATGGGGCAACGGCG
AGGACGACTGGTGCCTGGAGTGCGACGACCCAAGCCACGCTAGCTCCTCG
TGTCCTCGTGTCCTGTCCACCTACCCTCCCTCCCTCCCCCCCTTGCTGCC
AGCGATTGAAAAATGGATGGAGGAGAGGCTGGAAAGGGTCCAGACATTGG
ATAGGGCGAGGGCATGGATTAAGATGGTGTCTGGGGCCGCCAAGAAAAAA
AAGAAGAGGGCCAACGCCGCCGCTGCCTCAGCCTCCTCCACCTCTCCCTC
CGTTCCGACCTCCTCTCTCCTGGTGGCAGTGCACGCCCGCCTGGCCCGGG
AGCTCCAAGAAAGGCATGACATCGTCCTCGTCCACACGGAGGAGAAGGGA
CGATGTTGCCTTGCCCCACCGCAAGGTTTCGAGCCGGGCCGATTGCTGAT
CGAGGAGGACGCATACATGTACCCTTTCCTCCTCCCTCCCTCCTCCTCCC
CCTCCTCCTCCGTCGCCCTTGCCGCCCGCCTCCTCTCCCTCCTCAATACC
AATTCCCACGAGCTGGAGGAACTTGGTCCGGGCTCCGGTCTCTTCCTTCG
GGCCTGCCTCCTTGAACACTCCTGCATGCCCAACTGCGCCTTTGCGTAGG
CATTGGTTCGTCTCCAGCAAGAAGGAAGGGAAGGAGGGGAGGAAGGAGGG
GAGGAGGGCGGGCGATGGCTTGACCCGCTCTTGGCGTTGACGGCGTGCAA
CATAGACGGTTGTGTTAAGGATGCCCAAAAGCTGGCGAAAAAATGGGGCA
ACGGCGAGGACGACTGGTGCCTGGAGTGCGACGACCCAAGCCACGCTAGC
TCCTCGTGTCCTCGTGTCCTGTCCACCTACCCTCCCTCCCTCCCCCCCTT
GCTGCCAGCGATTGAAAAATGGATGGAGGAGAGGCTGGAAAGGGTCCAGA
CATTGGATAGGGCGAGGGCATGGATTAAGATGGTGTCTGGGGCCGCCAAG
AAAAAAAAGAAGAGGGCCAACGCCGCCGCTGCCTCAGCCTCCTCCACCTC
TCCCTCCGTTCCGACCTCCTCTCTCCTGGTGGCAGTGCACGCCCGCCTGG
CCCGGGAGCTCCAAGAAAGGCATGACATCGTCCTCGTCCACACGGAGGAG
AAGGGACGATGTTGCCTTGCCCCACCGCAAGGTTTCGAGCCGGGCCGATT
GCTGATCGAGGAGGACGCATACAT
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Synonyms
Publications