jgi.p|Nanoce1779_2|585356, mRNA_3795 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585356
Unique NamemRNA_3795
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1157
Alignment locationscaffold_8:6812..7968 -

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Properties
Property NameValue
TranscriptId585442
TrackFilteredModels2
ProteinId585356
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:6812..7968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585356gene_3795Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585356mRNA_3795-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3795CDS_3795Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3795 ID=mRNA_3795|Name=jgi.p|Nanoce1779_2|585356|organism=Nannochloropsis oceanica|type=mRNA|length=1157bp
CAGATTGACAGCCACGGCAGGACAATCATCATGACGCTCGGAGCGGATCC
ATTGCCCTTCAGCTGCACCAGCACCTCGACAACCAGAAAACATGGTGCAG
ACGATGCGACGACCCTTGGTCCTCCCCCCGCCGCGGCGGTCGAGGACCCC
CCACTTGCGCCCACGAACATGGACAGCACGACCCCAAGCTCAACACCTAA
AGGCACACTCGACGTCTTGTTTCTCGGCACGGGAGTAAGCATCGCAGTCC
CCAACATGGGTCACGTGTTGCAGGAGGATTGTGCCATTTGCCTCCGGGCC
CACTCCGAACCCACGAGCAAGGACCGGCGCAACAACGTCAGCATTGCCGT
CTTAGTAAATGGCACGGGCGAAGGACCCACAGACACTAACCGAGATTGCA
TTCTGGTGGACGCGGGCAAGACGATGCGAGACTCTATCCTGCGACGATTC
CCGGCCGAGGGGATAAAGAGCGTGCAAACCCTGTTGCTGACGCACGACCA
CGCTGACGCCACCTTTGGGCTGGACGATCTGCGGGACTTGCAGAAGAAGG
AGCACGTAGAAGGCTCGGGTATCCGGCTAGTCGACCCCCCCATTGACGTA
TTCTTGCAACGAGCCACATATGCCACCATCAAAAAACAATTCGCCTATCT
CGTCAGCGCCACACCGTGGATCGACGAATCCCGCCGCCTCCTCCTCCGAA
ACGTGCCTGTCCTTGCCTGGCACCCGCTCTCCTCCGACGACGCCGAGCTG
CATGTAACAGCCAGCCAGGTACCTGTCCGCACCTTCCCCGTGCTCCATGG
AGGGGACTATGTCTCGCTCGGGTTCACTTTTGGGAGGCCGGGCGAGTTTG
TCTACATCTCCGACGTCAAGCTAATCCCTCCCTCCAGCCTGGCCTTTCTT
CAGTCCCTTCCCCCTATCCAGACCCTGGTGCTGGACTGCATCAGCACAGC
CTCCACGCTCCACTACTCCCACTTCAATATGGCCGAGGCACTGGCGACGG
TGGACTTGCTCAAGCCAAGGCAGGCCTACCTAACGGGCATGTGCTGCGAG
GTGGGGAATCACGAGGAGCTGAATGAGAGGCTGCTCAAAATGGGCTACCC
CCACGTGAGCCTAGCTTGGGATGGAATGGTGGTCAGGGGGGTCAAGATGT
GAGGAGA
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protein sequence of jgi.p|Nanoce1779_2|585356

>mRNA_3795-protein ID=mRNA_3795-protein|Name=jgi.p|Nanoce1779_2|585356|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MTLGADPLPFSCTSTSTTRKHGADDATTLGPPPAAAVEDPPLAPTNMDST
TPSSTPKGTLDVLFLGTGVSIAVPNMGHVLQEDCAICLRAHSEPTSKDRR
NNVSIAVLVNGTGEGPTDTNRDCILVDAGKTMRDSILRRFPAEGIKSVQT
LLLTHDHADATFGLDDLRDLQKKEHVEGSGIRLVDPPIDVFLQRATYATI
KKQFAYLVSATPWIDESRRLLLRNVPVLAWHPLSSDDAELHVTASQVPVR
TFPVLHGGDYVSLGFTFGRPGEFVYISDVKLIPPSSLAFLQSLPPIQTLV
LDCISTASTLHYSHFNMAEALATVDLLKPRQAYLTGMCCEVGNHEELNER
LLKMGYPHVSLAWDGMVVRGVKM*
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mRNA from alignment at scaffold_8:6812..7968-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3795 ID=mRNA_3795|Name=jgi.p|Nanoce1779_2|585356|organism=Nannochloropsis oceanica|type=mRNA|length=1157bp|location=Sequence derived from alignment at scaffold_8:6812..7968- (Nannochloropsis oceanica)
CAGATTGACAGCCACGGCAGGACAATCATCATGACGCTCGGAGCGGATCC
ATTGCCCTTCAGCTGCACCAGCACCTCGACAACCAGAAAACATGGTGCAG
ACGATGCGACGACCCTTGGTCCTCCCCCCGCCGCGGCGGTCGAGGACCCC
CCACTTGCGCCCACGAACATGGACAGCACGACCCCAAGCTCAACACCTAA
AGGCACACTCGACGTCTTGTTTCTCGGCACGGGAGTAAGCATCGCAGTCC
CCAACATGGGTCACGTGTTGCAGGAGGATTGTGCCATTTGCCTCCGGGCC
CACTCCGAACCCACGAGCAAGGACCGGCGCAACAACGTCAGCATTGCCGT
CTTAGTAAATGGCACGGGCGAAGGACCCACAGACACTAACCGAGATTGCA
TTCTGGTGGACGCGGGCAAGACGATGCGAGACTCTATCCTGCGACGATTC
CCGGCCGAGGGGATAAAGAGCGTGCAAACCCTGTTGCTGACGCACGACCA
CGCTGACGCCACCTTTGGGCTGGACGATCTGCGGGACTTGCAGAAGAAGG
AGCACGTAGAAGGCTCGGGTATCCGGCTAGTCGACCCCCCCATTGACGTA
TTCTTGCAACGAGCCACATATGCCACCATCAAAAAACAATTCGCCTATCT
CGTCAGCGCCACACCGTGGATCGACGAATCCCGCCGCCTCCTCCTCCGAA
ACGTGCCTGTCCTTGCCTGGCACCCGCTCTCCTCCGACGACGCCGAGCTG
CATGTAACAGCCAGCCAGGTACCTGTCCGCACCTTCCCCGTGCTCCATGG
AGGGGACTATGTCTCGCTCGGGTTCACTTTTGGGAGGCCGGGCGAGTTTG
TCTACATCTCCGACGTCAAGCTAATCCCTCCCTCCAGCCTGGCCTTTCTT
CAGTCCCTTCCCCCTATCCAGACCCTGGTGCTGGACTGCATCAGCACAGC
CTCCACGCTCCACTACTCCCACTTCAATATGGCCGAGGCACTGGCGACGG
TGGACTTGCTCAAGCCAAGGCAGGCCTACCTAACGGGCATGTGCTGCGAG
GTGGGGAATCACGAGGAGCTGAATGAGAGGCTGCTCAAAATGGGCTACCC
CCACGTGAGCCTAGCTTGGGATGGAATGGTGGTCAGGGGGGTCAAGATGT
GAGGAGA
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Coding sequence (CDS) from alignment at scaffold_8:6812..7968-

>mRNA_3795 ID=mRNA_3795|Name=jgi.p|Nanoce1779_2|585356|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_8:6812..7968- (Nannochloropsis oceanica)
ATGACGCTCGGAGCGGATCCATTGCCCTTCAGCTGCACCAGCACCTCGAC
AACCAGAAAACATGGTGCAGACGATGCGACGACCCTTGGTCCTCCCCCCG
CCGCGGCGGTCGAGGACCCCCCACTTGCGCCCACGAACATGGACAGCACG
ACCCCAAGCTCAACACCTAAAGGCACACTCGACGTCTTGTTTCTCGGCAC
GGGAGTAAGCATCGCAGTCCCCAACATGGGTCACGTGTTGCAGGAGGATT
GTGCCATTTGCCTCCGGGCCCACTCCGAACCCACGAGCAAGGACCGGCGC
AACAACGTCAGCATTGCCGTCTTAGTAAATGGCACGGGCGAAGGACCCAC
AGACACTAACCGAGATTGCATTCTGGTGGACGCGGGCAAGACGATGCGAG
ACTCTATCCTGCGACGATTCCCGGCCGAGGGGATAAAGAGCGTGCAAACC
CTGTTGCTGACGCACGACCACGCTGACGCCACCTTTGGGCTGGACGATCT
GCGGGACTTGCAGAAGAAGGAGCACGTAGAAGGCTCGGGTATCCGGCTAG
TCGACCCCCCCATTGACGTATTCTTGCAACGAGCCACATATGCCACCATC
AAAAAACAATTCGCCTATCTCGTCAGCGCCACACCGTGGATCGACGAATC
CCGCCGCCTCCTCCTCCGAAACGTGCCTGTCCTTGCCTGGCACCCGCTCT
CCTCCGACGACGCCGAGCTGCATGTAACAGCCAGCCAGGTACCTGTCCGC
ACCTTCCCCGTGCTCCATGGAGGGGACTATGTCTCGCTCGGGTTCACTTT
TGGGAGGCCGGGCGAGTTTGTCTACATCTCCGACGTCAAGCTAATCCCTC
CCTCCAGCCTGGCCTTTCTTCAGTCCCTTCCCCCTATCCAGACCCTGGTG
CTGGACTGCATCAGCACAGCCTCCACGCTCCACTACTCCCACTTCAATAT
GGCCGAGGCACTGGCGACGGTGGACTTGCTCAAGCCAAGGCAGGCCTACC
TAACGGGCATGTGCTGCGAGGTGGGGAATCACGAGGAGCTGAATGAGAGG
CTGCTCAAAATGGGCTACCCCCACGTGAGCCTAGCTTGGGATGGAATGGT
GGTCAGGGGGGTCAAGATGTGA
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Synonyms
Publications