jgi.p|Nanoce1779_2|423450, mRNA_4065 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|423450
Unique NamemRNA_4065
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length640
Alignment locationscaffold_8:753784..754423 -

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Properties
Property NameValue
TranscriptId423536
TrackFilteredModels2
ProteinId423450
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:753784..754423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|423450gene_4065Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|423450mRNA_4065-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4065CDS_4065Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4065 ID=mRNA_4065|Name=jgi.p|Nanoce1779_2|423450|organism=Nannochloropsis oceanica|type=mRNA|length=640bp
GAATGGGTAAGTAGACGAAATGTGACGACGAGAAGACGACGATGCTGCCT
TCGGCCTATTATGACCTAAAGCTCATTATTATTATATATATATAAGGACG
ACAGGAAAAAATGAAGTACCATCCTTAAAAATCCAAAATCGCGGAGGGGG
AATGGAGATCTTGCTTGCATTTTCGCTTGCCATAGCTTGTCGCGTGCTGG
TTCAGTCGCTCGGTTATCACATGTCGGGTTTTCTTCTTCTGGTCGTTCGT
TTTCAAACTCAATTCCTGCTTCCCCTTCTTTATCGCCGTCTTCTTCTTCG
ACCTCGTGCGCCTGCGGAAGGCAGGAATCAAGGTCGGGAGGAAGACAGGG
AAAAAGAAAAGAAAGTAATTCATCCAAGACCTAAGCCCAACAACCCAACG
CAAACTCCTTCCCTCACACACTCACGCTACCCCCCTATCGTCGTCGTATG
TATCCTCTACCTTCACGTTATGCACCCCTTCTTCGCTCTTCCTCCAAATT
CTTCTTTCATGTTCTATGAGTCTCTCTTTCGAAGTCTTTTCATATCTGTC
ATTCCCATCGTCGTTGTGGCTTGCACTTTACGTATATAGCGTCTATAGTT
TTAGACGCAGGATGCGGGCAGCAGGAGCAGCCCTGGCGGT
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protein sequence of jgi.p|Nanoce1779_2|423450

>mRNA_4065-protein ID=mRNA_4065-protein|Name=jgi.p|Nanoce1779_2|423450|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MEILLAFSLAIACRVLVQSLGYHMSGFLLLVVRFQTQFLLPLLYRRLLLR
PRAPAEGRNQGREEDREKEKKVIHPRPKPNNPTQTPSLTHSRYPPIVVVC
ILYLHVMHPFFALPPNSSFMFYESLFRSLFISVIPIVVVACTLRI*
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mRNA from alignment at scaffold_8:753784..754423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4065 ID=mRNA_4065|Name=jgi.p|Nanoce1779_2|423450|organism=Nannochloropsis oceanica|type=mRNA|length=640bp|location=Sequence derived from alignment at scaffold_8:753784..754423- (Nannochloropsis oceanica)
GAATGGGTAAGTAGACGAAATGTGACGACGAGAAGACGACGATGCTGCCT
TCGGCCTATTATGACCTAAAGCTCATTATTATTATATATATATAAGGACG
ACAGGAAAAAATGAAGTACCATCCTTAAAAATCCAAAATCGCGGAGGGGG
AATGGAGATCTTGCTTGCATTTTCGCTTGCCATAGCTTGTCGCGTGCTGG
TTCAGTCGCTCGGTTATCACATGTCGGGTTTTCTTCTTCTGGTCGTTCGT
TTTCAAACTCAATTCCTGCTTCCCCTTCTTTATCGCCGTCTTCTTCTTCG
ACCTCGTGCGCCTGCGGAAGGCAGGAATCAAGGTCGGGAGGAAGACAGGG
AAAAAGAAAAGAAAGTAATTCATCCAAGACCTAAGCCCAACAACCCAACG
CAAACTCCTTCCCTCACACACTCACGCTACCCCCCTATCGTCGTCGTATG
TATCCTCTACCTTCACGTTATGCACCCCTTCTTCGCTCTTCCTCCAAATT
CTTCTTTCATGTTCTATGAGTCTCTCTTTCGAAGTCTTTTCATATCTGTC
ATTCCCATCGTCGTTGTGGCTTGCACTTTACGTATATAGCGTCTATAGTT
TTAGACGCAGGATGCGGGCAGCAGGAGCAGCCCTGGCGGT
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Coding sequence (CDS) from alignment at scaffold_8:753784..754423-

>mRNA_4065 ID=mRNA_4065|Name=jgi.p|Nanoce1779_2|423450|organism=Nannochloropsis oceanica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_8:753784..754423- (Nannochloropsis oceanica)
ATGGAGATCTTGCTTGCATTTTCGCTTGCCATAGCTTGTCGCGTGCTGGT
TCAGTCGCTCGGTTATCACATGTCGGGTTTTCTTCTTCTGGTCGTTCGTT
TTCAAACTCAATTCCTGCTTCCCCTTCTTTATCGCCGTCTTCTTCTTCGA
CCTCGTGCGCCTGCGGAAGGCAGGAATCAAGGTCGGGAGGAAGACAGGGA
AAAAGAAAAGAAAGTAATTCATCCAAGACCTAAGCCCAACAACCCAACGC
AAACTCCTTCCCTCACACACTCACGCTACCCCCCTATCGTCGTCGTATGT
ATCCTCTACCTTCACGTTATGCACCCCTTCTTCGCTCTTCCTCCAAATTC
TTCTTTCATGTTCTATGAGTCTCTCTTTCGAAGTCTTTTCATATCTGTCA
TTCCCATCGTCGTTGTGGCTTGCACTTTACGTATATAG
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Synonyms
Publications