jgi.p|Nanoce1779_2|540518, mRNA_3884 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|540518
Unique Name	mRNA_3884
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1741
Alignment location	scaffold_8:303473..305763 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	540604
Track	FilteredModels2
ProteinId	540518

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:303473..305763 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|540518	gene_3884	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|540518	mRNA_3884-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3884	CDS_3884	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:303473..305763+
coding sequence from alignment at scaffold_8:303473..305763+

mRNA sequence

>mRNA_3884 ID=mRNA_3884|Name=jgi.p|Nanoce1779_2|540518|organism=Nannochloropsis oceanica|type=mRNA|length=1741bp
GCAGGAACAGCACCCTGCTATTGCTCCTATCCATCTTCCTTGTGCTATTG
CCGAAACGTGATTGATATGTGCGTTGTGGAGTGTTTGAGGTGGAAATGAG
TGCCCCAAAGCCCGAACGACGAATATCGCCAACTTGAAACGCGCTGCGCC
TACAACAACAGACTGCTGCCGGTCTCACCACTCCGAGCCCCCGCTCATTG
TCCTCCTCAGAACCACAGGAATTAAATTCGCTGGGGGAGGAAAAGCTTTT
TTTCGACCACAAGGTGACTCCGCAAATTCGTGCCAGCAGTCCTCCGTCTT
TCTACCCTCGCCTTCCACACACGCGAAGCTAGGCCATGGTCTCAGCATCA
GCTTCGATGATCACTCCACAGCAATCCTTTGACCCCCTGGTCGCCGCCTC
GGGCGCAGTCCTGAATTTGGTCGCCTGCTGCAGCGTAGGTGTCACGGCCA
GTAAAGCCCGGGTGCTGGATCAACAAGCCATCTCCGCCCTCTCCCGCCTG
GTTTACAATGTGTTCCAGCCCTCCTTGCTTTTCACCAACGTCCTCCAAAC
TCTCGCCACTCCCAATCAATCCCACGGTATCTTGCTCTTGCTCCCCTTGG
CGGCAGCGCTGCAGATCCTGGCTGCTGGGGCCCTTTCCGGCGTACTTCTG
CGCCTGGTGGGACTTGACCCAAGGAGCGAGACAGGGCGAGAGGCACGTAT
TTGTTCTACTTTTGCGAATGCTGGGCCCTTGCCGTTGTTGTTTGTCGATG
CTTTGTTTAAAAATCATCCTGACCCTACTTTACGACCGCGGGCTGTGGCG
TTCATTTCATTTTATCTCTTGGCGTGGTCGCCATTGTTTTGGAACTACGG
TTATGGGATTTTGATTGGAGGGGAAGGAGTAGGTGGGAGGAAGGGAGGAG
ACGTGCAACGCGCACAGGAGGGCAGCGCAGCAACACTAGCCTATACCCAG
CTACAGATACAGGAGAAATGTGCGCAGGACCCGGCTATGTTTGTGCTGGC
AAGAATGAGGCGATTTTGGGGCTCCCGGGCGATTAAAAAGCTACTTAACC
CTCCGACGTTGGGGTGCACGGTGGGAGCGTTGGTCGGGGTGATCCCACCT
ATGCGACGACTTTTTGTAGGAGACGGAGCGCCATTGTCCTGCATTTTTGC
AGCATTGCGGACCATGAGCTCGGCCTACGTGCCTTGCGTGCTGCTCGTCC
TTTCCGGGTCTTTAGCGCAGGGCCTTGAGGGTTTTGACCGCAGCATCCTT
CGTCGAGCAGCTTTGGTGATGTTTCAGCGTTTTTGTCTTATGCCCGCCTT
CGCCCTTGCCATGGTGGAAGCAGGAAAGCGCATTGGTCTCCTCCCATCGG
GTGACCCGCTCCTGATCTTCGTGCTCCTCTTGCAGGGCTGCATGCCTTCT
GCGCAAAACTCCGTCTTGATTCTACAATTGGAGAGGCGACCCCATGCGGC
GACATCCATGGCGCGGCTCATTTCTACCGTCTACGTCTTGTCCATCCTTC
CCATTGGCTTGCTGATTCGGGCCTTACTTTCCTTCTGTCCCCTTGGGTTC
GAGAATAGATAGCACTTTGAAGACTTAAAAATAAGGAGGGTGGGATAAAT
TTTTACATATACGCCTCATCGCTATTGTTTTGTTTCTCTCGTGAGTATTT
TTTAATTTCAGTCCTCACGTTTTGGCGTTAGGGAATGACGAGGTAGAGCG
CTAAAATCGGGTGAATGTGACATCATTCCATATGACATTTT

protein sequence of jgi.p|Nanoce1779_2|540518

>mRNA_3884-protein ID=mRNA_3884-protein|Name=jgi.p|Nanoce1779_2|540518|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MVSASASMITPQQSFDPLVAASGAVLNLVACCSVGVTASKARVLDQQAIS
ALSRLVYNVFQPSLLFTNVLQTLATPNQSHGILLLLPLAAALQILAAGAL
SGVLLRLVGLDPRSETGREARICSTFANAGPLPLLFVDALFKNHPDPTLR
PRAVAFISFYLLAWSPLFWNYGYGILIGGEGVGGRKGGDVQRAQEGSAAT
LAYTQLQIQEKCAQDPAMFVLARMRRFWGSRAIKKLLNPPTLGCTVGALV
GVIPPMRRLFVGDGAPLSCIFAALRTMSSAYVPCVLLVLSGSLAQGLEGF
DRSILRRAALVMFQRFCLMPAFALAMVEAGKRIGLLPSGDPLLIFVLLLQ
GCMPSAQNSVLILQLERRPHAATSMARLISTVYVLSILPIGLLIRALLSF
CPLGFENR*

mRNA from alignment at scaffold_8:303473..305763+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3884 ID=mRNA_3884|Name=jgi.p|Nanoce1779_2|540518|organism=Nannochloropsis oceanica|type=mRNA|length=2291bp|location=Sequence derived from alignment at scaffold_8:303473..305763+ (Nannochloropsis oceanica)
GCAGGAACAGCACCCTGCTATTGCTCCTATCCATCTTCCTTGTGCTATTG
CCGAAACGTGATTGATATGTGCGTTGTGGAGTGTTTGAGGTGGAAATGAG
TGCCCCAAAGCCCGAACGACGAATATCGCCAACTTGAAACGCGCTGCGCC
TACAACAACAGACTGCTGCCGGTCTCACCACTCCGAGCCCCCGCTCATTG
TCCTCCTCAGAACCACAGGAATTAAATTCGCTGGGGGAGGAAAAGCTTTT
TTTCGACCACAAGGTGACTCCGCAAATTCGTGCCAGCAGTCCTCCGTCTT
TCTACCCTCGCCTTCCACACACGCGAAGCTAGGCCATGGTCTCAGCATCA
GCTTCGATGATCACTCCACAGCAATCCTTTGACCCCCTGGTCGCCGCCTC
GGGCGCAGTCCTGAATTTGGTCGCCTGCTGCAGCGTAGGTGTCACGGCCA
GTAAAGCCCGGGTGCTGGATCAACAAGCCATCTCCGCCCTCTCCCGCCTG
GTTTACAATGTGTTCCAGCCCTCCTTGCTTTTCACCAACGTCCTCCAAAC
TCTCGCCACTCCCAATCAATCCCACGGTATCTTGCTCTTGCTCCCCTTGG
CGGCAGCGCTGCAGATCCTGGCTGCTGGGGCCCTTTCCGGCGTACTTCTG
CGCCTGGTGGGACTTGACCCAAGGAGCGAGACAGGGCGAGAGGCACGTAT
TTGTTCTACTTTTGCGAATGCTGGGCCCTTGCCGTTGTTGTTTGTCGATG
CTTTGTTTAAAAATCATCCTGACCCTACTTTACGACCGCGGGCTGTGGCG
TTCATTTCATTTTATCTCTTGGCGTGGTCGCCATTGTTTTGGAACTACGG
TTATGGGATTTTGATTGGAGGGGAAGGAGTAGGTGGGAGGAAGGGAGGAG
ACGTGCAACGCGCACAGGTGACAATGAATAAAAAGGATCTGGGAGCACCT
GGCGTTATTGGTGTGGATGGTCTGACGGGAAGTGGGAATGGCGCGGGGAG
GATGATGGAGGAGGGCATCGGCAGCTGGAAGGAGGGCAGCGCAGCAACAC
TAGCCTATACCCAGCTACAGATACAGGAGAAATGTGCGCAGGACCCGGCT
ATGTTTGTGCTGGCAAGAATGAGGCGATTTTGGGGCTCCCGGGCGATTAA
AAAGCTACTTAACCCTCCGACGTTGGGGTGCACGGTGGGAGCGTTGGTCG
GGGTGATCCCACCTATGCGACGGTGAGCCAGTGGGGGGGGGACGGAATGG
AGGGAGGAGAGGAAGTGAAGGGGATGGGCGTGTCATGGAAATTAATCCTG
TGGGAGTCTCCATTCGAAACATGGCTTTGTCGAAATCCCTTTCTGTGTAT
GTGTCGGTCTGAGAATGGCCATCACTCTTGACGAATGTATCAGGGGAAAA
AACGACTACCCCACGACCCAAATCTAATTTTCTCCGACCCCCTCCTCACA
TATACATCTCGGAAAAATGAACAGACTTTTTGTAGGAGACGGAGCGCCAT
TGTCCTGCATTTTTGCAGCATTGCGGACCATGAGCTCGGCCTACGTGCCT
TGCGTGCTGCTCGTCCTTTCCGGGTCTTTAGCGCAGGTAAGAAATTAGAA
AATTTTGGGACTGATTTGAAAAAGGACCATTTCAGTCAGAACTTTTCGTG
TCTGAGGCCTGTTCATTGCCTTATTATCTCAAGGTGTGGGGATGGTGCAC
CCGAGCTCATATTTTTACCTCCCCTCCCTCATTCCTCCCTTTTTTCTCCT
TTCCCTGGCTGATCCCAAAGGGCCTTGAGGGTTTTGACCGCAGCATCCTT
CGTCGAGCAGCTTTGGTGATGTTTCAGCGTTTTTGTCTTATGCCCGCCTT
CGCCCTTGCCATGGTGGAAGCAGGAAAGCGCATTGGTCTCCTCCCATCGG
GTGACCCGCTCCTGATCTTCGTGCTCCTCTTGCAGGGCTGCATGCCTTCT
GCGCAAAACTCCGTCTTGATTCTACAATTGGAGAGGCGACCCCATGCGGC
GACATCCATGGCGCGGCTCATTTCTACCGTCTACGTCTTGTCCATCCTTC
CCATTGGCTTGCTGATTCGGGCCTTACTTTCCTTCTGTCCCCTTGGGTTC
GAGAATAGATAGCACTTTGAAGACTTAAAAATAAGGAGGGTGGGATAAAT
TTTTACATATACGCCTCATCGCTATTGTTTTGTTTCTCTCGTGAGTATTT
TTTAATTTCAGTCCTCACGTTTTGGCGTTAGGGAATGACGAGGTAGAGCG
CTAAAATCGGGTGAATGTGACATCATTCCATATGACATTTT

Coding sequence (CDS) from alignment at scaffold_8:303473..305763+

>mRNA_3884 ID=mRNA_3884|Name=jgi.p|Nanoce1779_2|540518|organism=Nannochloropsis oceanica|type=CDS|length=4908bp|location=Sequence derived from alignment at scaffold_8:303473..305763+ (Nannochloropsis oceanica)
ATGGTCTCAGCATCAGCTTCGATGATCACTCCACAGCAATCCTTTGACCC
CCTGGTCGCCGCCTCGGGCGCAGTCCTGAATTTGGTCGCCTGCTGCAGCG
TAGGTGTCACGGCCAGTAAAGCCCGGGTGCTGGATCAACAAGCCATCTCC
GCCCTCTCCCGCCTGGTTTACAATGTGTTCCAGCCCTCCTTGCTTTTCAC
CAACGTCCTCCAAACTCTCGCCACTCCCAATCAATCCCACGGTATCTTGC
TCTTGCTCCCCTTGGCGGCAGCGCTGCAGATCCTGGCTGCTGGGGCCCTT
TCCGGCGTACTTCTGCGCCTGGTGGGACTTGACCCAAGGAGCGAGACAGG
GCGAGAGGCACGTATTTGTTCTACTTTTGCGAATGCTGGGCCCTTGCCGT
TGTTGTTTGTCGATGCTTTGTTTAAAAATCATCCTGACCCTACTTTACGA
CCGCGGGCTGTGGCGTTCATTTCATTTTATCTCTTGGCGTGGTCGCCATT
GTTTTGGAACTACGGTTATGGGATTTTGATTGGAGGGGAAGGAGTAGGTG
GGAGGAAGGGAGGAGACGTGCAACGCGCACAGGAGGGCAGCGCAGCAACA
CTAGCCTATACCCAGCTACAGATACAGGAGAAATGTGCGCAGGACCCGGC
TATGTTTGTGCTGGCAAGAATGAGGCGATTTTGGGGCTCCCGGGCGATTA
AAAAGCTACTTAACCCTCCGACGTTGGGGTGCACGGTGGGAGCGTTGGTC
GGGGTGATCCCACCTATGCGACGACTTTTTGTAGGAGACGGAGCGCCATT
GTCCTGCATTTTTGCAGCATTGCGGACCATGAGCTCGGCCTACGTGCCTT
GCGTGCTGCTCGTCCTTTCCGGGTCTTTAGCGCAGGGCCTTGAGGGTTTT
GACCGCAGCATCCTTCGTCGAGCAGCTTTGGTGATGTTTCAGCGTTTTTG
TCTTATGCCCGCCTTCGCCCTTGCCATGGTGGAAGCAGGAAAGCGCATTG
GTCTCCTCCCATCGGGTGACCCGCTCCTGATCTTCGTGCTCCTCTTGCAG
GGCTGCATGCCTTCTGCGCAAAACTCCGTCTTGATTCTACAATTGGAGAG
GCGACCCCATGCGGCGACATCCATGGCGCGGCTCATTTCTACCGTCTACG
TCTTGTCCATCCTTCCCATTGGCTTGCTGATTCGGGCCTTACTTTCCTTC
TGTCCCCTTGGGTTCGAGAATAGATAGATGGTCTCAGCATCAGCTTCGAT
GATCACTCCACAGCAATCCTTTGACCCCCTGGTCGCCGCCTCGGGCGCAG
TCCTGAATTTGGTCGCCTGCTGCAGCGTAGGTGTCACGGCCAGTAAAGCC
CGGGTGCTGGATCAACAAGCCATCTCCGCCCTCTCCCGCCTGGTTTACAA
TGTGTTCCAGCCCTCCTTGCTTTTCACCAACGTCCTCCAAACTCTCGCCA
CTCCCAATCAATCCCACGGTATCTTGCTCTTGCTCCCCTTGGCGGCAGCG
CTGCAGATCCTGGCTGCTGGGGCCCTTTCCGGCGTACTTCTGCGCCTGGT
GGGACTTGACCCAAGGAGCGAGACAGGGCGAGAGGCACGTATTTGTTCTA
CTTTTGCGAATGCTGGGCCCTTGCCGTTGTTGTTTGTCGATGCTTTGTTT
AAAAATCATCCTGACCCTACTTTACGACCGCGGGCTGTGGCGTTCATTTC
ATTTTATCTCTTGGCGTGGTCGCCATTGTTTTGGAACTACGGTTATGGGA
TTTTGATTGGAGGGGAAGGAGTAGGTGGGAGGAAGGGAGGAGACGTGCAA
CGCGCACAGGAGGGCAGCGCAGCAACACTAGCCTATACCCAGCTACAGAT
ACAGGAGAAATGTGCGCAGGACCCGGCTATGTTTGTGCTGGCAAGAATGA
GGCGATTTTGGGGCTCCCGGGCGATTAAAAAGCTACTTAACCCTCCGACG
TTGGGGTGCACGGTGGGAGCGTTGGTCGGGGTGATCCCACCTATGCGACG
ACTTTTTGTAGGAGACGGAGCGCCATTGTCCTGCATTTTTGCAGCATTGC
GGACCATGAGCTCGGCCTACGTGCCTTGCGTGCTGCTCGTCCTTTCCGGG
TCTTTAGCGCAGGGCCTTGAGGGTTTTGACCGCAGCATCCTTCGTCGAGC
AGCTTTGGTGATGTTTCAGCGTTTTTGTCTTATGCCCGCCTTCGCCCTTG
CCATGGTGGAAGCAGGAAAGCGCATTGGTCTCCTCCCATCGGGTGACCCG
CTCCTGATCTTCGTGCTCCTCTTGCAGGGCTGCATGCCTTCTGCGCAAAA
CTCCGTCTTGATTCTACAATTGGAGAGGCGACCCCATGCGGCGACATCCA
TGGCGCGGCTCATTTCTACCGTCTACGTCTTGTCCATCCTTCCCATTGGC
TTGCTGATTCGGGCCTTACTTTCCTTCTGTCCCCTTGGGTTCGAGAATAG
ATAGATGGTCTCAGCATCAGCTTCGATGATCACTCCACAGCAATCCTTTG
ACCCCCTGGTCGCCGCCTCGGGCGCAGTCCTGAATTTGGTCGCCTGCTGC
AGCGTAGGTGTCACGGCCAGTAAAGCCCGGGTGCTGGATCAACAAGCCAT
CTCCGCCCTCTCCCGCCTGGTTTACAATGTGTTCCAGCCCTCCTTGCTTT
TCACCAACGTCCTCCAAACTCTCGCCACTCCCAATCAATCCCACGGTATC
TTGCTCTTGCTCCCCTTGGCGGCAGCGCTGCAGATCCTGGCTGCTGGGGC
CCTTTCCGGCGTACTTCTGCGCCTGGTGGGACTTGACCCAAGGAGCGAGA
CAGGGCGAGAGGCACGTATTTGTTCTACTTTTGCGAATGCTGGGCCCTTG
CCGTTGTTGTTTGTCGATGCTTTGTTTAAAAATCATCCTGACCCTACTTT
ACGACCGCGGGCTGTGGCGTTCATTTCATTTTATCTCTTGGCGTGGTCGC
CATTGTTTTGGAACTACGGTTATGGGATTTTGATTGGAGGGGAAGGAGTA
GGTGGGAGGAAGGGAGGAGACGTGCAACGCGCACAGGAGGGCAGCGCAGC
AACACTAGCCTATACCCAGCTACAGATACAGGAGAAATGTGCGCAGGACC
CGGCTATGTTTGTGCTGGCAAGAATGAGGCGATTTTGGGGCTCCCGGGCG
ATTAAAAAGCTACTTAACCCTCCGACGTTGGGGTGCACGGTGGGAGCGTT
GGTCGGGGTGATCCCACCTATGCGACGACTTTTTGTAGGAGACGGAGCGC
CATTGTCCTGCATTTTTGCAGCATTGCGGACCATGAGCTCGGCCTACGTG
CCTTGCGTGCTGCTCGTCCTTTCCGGGTCTTTAGCGCAGGGCCTTGAGGG
TTTTGACCGCAGCATCCTTCGTCGAGCAGCTTTGGTGATGTTTCAGCGTT
TTTGTCTTATGCCCGCCTTCGCCCTTGCCATGGTGGAAGCAGGAAAGCGC
ATTGGTCTCCTCCCATCGGGTGACCCGCTCCTGATCTTCGTGCTCCTCTT
GCAGGGCTGCATGCCTTCTGCGCAAAACTCCGTCTTGATTCTACAATTGG
AGAGGCGACCCCATGCGGCGACATCCATGGCGCGGCTCATTTCTACCGTC
TACGTCTTGTCCATCCTTCCCATTGGCTTGCTGATTCGGGCCTTACTTTC
CTTCTGTCCCCTTGGGTTCGAGAATAGATAGATGGTCTCAGCATCAGCTT
CGATGATCACTCCACAGCAATCCTTTGACCCCCTGGTCGCCGCCTCGGGC
GCAGTCCTGAATTTGGTCGCCTGCTGCAGCGTAGGTGTCACGGCCAGTAA
AGCCCGGGTGCTGGATCAACAAGCCATCTCCGCCCTCTCCCGCCTGGTTT
ACAATGTGTTCCAGCCCTCCTTGCTTTTCACCAACGTCCTCCAAACTCTC
GCCACTCCCAATCAATCCCACGGTATCTTGCTCTTGCTCCCCTTGGCGGC
AGCGCTGCAGATCCTGGCTGCTGGGGCCCTTTCCGGCGTACTTCTGCGCC
TGGTGGGACTTGACCCAAGGAGCGAGACAGGGCGAGAGGCACGTATTTGT
TCTACTTTTGCGAATGCTGGGCCCTTGCCGTTGTTGTTTGTCGATGCTTT
GTTTAAAAATCATCCTGACCCTACTTTACGACCGCGGGCTGTGGCGTTCA
TTTCATTTTATCTCTTGGCGTGGTCGCCATTGTTTTGGAACTACGGTTAT
GGGATTTTGATTGGAGGGGAAGGAGTAGGTGGGAGGAAGGGAGGAGACGT
GCAACGCGCACAGGAGGGCAGCGCAGCAACACTAGCCTATACCCAGCTAC
AGATACAGGAGAAATGTGCGCAGGACCCGGCTATGTTTGTGCTGGCAAGA
ATGAGGCGATTTTGGGGCTCCCGGGCGATTAAAAAGCTACTTAACCCTCC
GACGTTGGGGTGCACGGTGGGAGCGTTGGTCGGGGTGATCCCACCTATGC
GACGACTTTTTGTAGGAGACGGAGCGCCATTGTCCTGCATTTTTGCAGCA
TTGCGGACCATGAGCTCGGCCTACGTGCCTTGCGTGCTGCTCGTCCTTTC
CGGGTCTTTAGCGCAGGGCCTTGAGGGTTTTGACCGCAGCATCCTTCGTC
GAGCAGCTTTGGTGATGTTTCAGCGTTTTTGTCTTATGCCCGCCTTCGCC
CTTGCCATGGTGGAAGCAGGAAAGCGCATTGGTCTCCTCCCATCGGGTGA
CCCGCTCCTGATCTTCGTGCTCCTCTTGCAGGGCTGCATGCCTTCTGCGC
AAAACTCCGTCTTGATTCTACAATTGGAGAGGCGACCCCATGCGGCGACA
TCCATGGCGCGGCTCATTTCTACCGTCTACGTCTTGTCCATCCTTCCCAT
TGGCTTGCTGATTCGGGCCTTACTTTCCTTCTGTCCCCTTGGGTTCGAGA
ATAGATAG

Synonyms

Publications