jgi.p|Nanoce1779_2|585673, mRNA_3868 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585673
Unique Name	mRNA_3868
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1859
Alignment location	scaffold_8:267829..269844 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	585759
Track	FilteredModels2
ProteinId	585673

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:267829..269844 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585673	gene_3868	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585673	mRNA_3868-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3868	CDS_3868	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:267829..269844+
coding sequence from alignment at scaffold_8:267829..269844+

mRNA sequence

>mRNA_3868 ID=mRNA_3868|Name=jgi.p|Nanoce1779_2|585673|organism=Nannochloropsis oceanica|type=mRNA|length=1859bp
AGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAAGAAAAACAGGAG
CAGCAGCGACACCATTTTTATCACACCAGTGAAGACCAGATTTATCACAA
ACATGGGCGACGCGGACAATTACTACCAAAACCTCCAAACCCGCCGTCGA
GCCGACCACCACGTTTCAACCAACTCCGCGACAGCTTCCTCCCTTGGTGG
AGGGGGAAATGCTGCTGCAAGAGGCGAAAGCCCTCAGCTTTTTGTGGCAC
CGTGTCATGCAATCTGCCAGCAAGAGACCGAAATTAACTCGAAGTCTGCT
GATTCAAAGGACCGGAAGGTGGACGAGGACGTGGTAGGAAAAAAGAAGAA
CGACGACGAGATGGTCTCTATTACCATCCACCCGCCCGTCCTGACGCCAG
GGAAGATTACGGACATGACCAAGCAGCAGCAGACAGCAGGGGATAAAAGA
GACAGTGGTGGTAGGGTGAAGGAGAAGAAGGAGGCGGAGTGCGCTTCTAT
TCCCCCCATCGTAACCAGAGACATTCGCACGCAGAGCAGGCCTGCTGCCC
CGAAAAGCTGTACCTCTGCCAGTGAGGCCACGCACCAGCGACGGGCGAAA
AGGTCTCTGCCTCTTCCGAGCGCCCCTGTCTCTCGCATCCGCACGCGGCA
ATACGATAGGATGTTACCCATAGAGGACGAGACCATGGCCGAAGAAAGGG
AGACTGACATAGAGCCGAATGGGCTCCGGGTTGGTTTGTGCTTGGGCATG
ATTCGAATGACGGATAAATTTATGGAATGCTACGAGGGGTGCGCAGACCC
GATGCTGGACGTGGCTGCCGCAAGAGATACCTCGCGGATGCGAATTTTGG
AGAAAGAGACGGGCATGGATATAATCGCCTTATGCGACTCGCGGGAGTTG
AGAGGGGTGGACCACGGAGGCTTGGGAAGGCGGGAAAAGGGAAAGCATGT
CTCGGGACGATTTGAAAACCCGCCGCTGCGGGCTATCAAGGTAAGAGTGA
CACGGGAGGAGGGAGAGCGGAGAATTATGACTGGCTCGGTTCAAACTTCA
AGACAGTACACGCAGACATTTGCCAAGCTTTTTCGCTCCATTTCATTCAC
CCCACCTTCTCCTCTCCTCTCACACAGAGCGTGTTGGGGAAACGCAAGAT
CAGCTTTATCTTTGGAGACTACGTCCGCTTCCCCACTGCATACTTCAGGC
CTGCCTACCGTGCCGTGGCCAATGTATTGCTACCTGCCTTGAGGCGTTCA
GGTCTGTTGGCGCCTGAATGTCAAGTGTATCTGCCTTTTCTCAACCTGTA
CGATGGCGTCGAAAATGTGTTTGAGAGGGTGATGGCCGATAGGACCATGG
CACCTGTAATGGTGAGCGAGCGGGAAAATCCATTATATTGCGCGACCAAG
ACGTTGTTTGACGAGGATCACGTACACAAATGTGAGGGATTGATGCCCGG
AACGTCCTTCCTACGATTGACGATAAAATCCGATGAAAACTAATCGACTT
ACTTCATTTTAAGAGGGTGGTTTTATTCCTCGTGGAGATGACGATGACGT
GTGTGTAAGAGAGAGACAGAGCGGAATGTGTGTTGTTTGATCGAGACATT
GAATGTGGCCACGTCTACCAGGGGAACGTAATGGGTGGGCTGGACGTGGA
TGGCATGCTGCGGCGCGTGTTTCGGGTTGTGACAGATCAAACGAGCCCAG
CGTGAAGTCTGCAAGAGTTCAAGAGCTCTATTTTAGCACGGATGTAAAAG
AAGAGACAGGAGATGAAAGGGGGGGCGTGATGCTAGTGGATCCCGCACGC
AGCAGTTCACGTTCACATGTTCAACAATGGAAACGTTTGAAAATTAGCCA
CCACACACA

protein sequence of jgi.p|Nanoce1779_2|585673

>mRNA_3868-protein ID=mRNA_3868-protein|Name=jgi.p|Nanoce1779_2|585673|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MGDADNYYQNLQTRRRADHHVSTNSATASSLGGGGNAAARGESPQLFVAP
CHAICQQETEINSKSADSKDRKVDEDVVGKKKNDDEMVSITIHPPVLTPG
KITDMTKQQQTAGDKRDSGGRVKEKKEAECASIPPIVTRDIRTQSRPAAP
KSCTSASEATHQRRAKRSLPLPSAPVSRIRTRQYDRMLPIEDETMAEERE
TDIEPNGLRVGLCLGMIRMTDKFMECYEGCADPMLDVAAARDTSRMRILE
KETGMDIIALCDSRELRGVDHGGLGRREKGKHVSGRFENPPLRAIKVRVT
REEGERRIMTGSVQTSRQYTQTFAKLFRSISFTPPSPLLSHRACWGNARS
ALSLETTSASPLHTSGLPTVPWPMYCYLP*

mRNA from alignment at scaffold_8:267829..269844+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3868 ID=mRNA_3868|Name=jgi.p|Nanoce1779_2|585673|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp|location=Sequence derived from alignment at scaffold_8:267829..269844+ (Nannochloropsis oceanica)
AGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAAGAAAAACAGGAG
CAGCAGCGACACCATTTTTATCACACCAGTGAAGACCAGATTTATCACAA
ACATGGGCGACGCGGACAATTACTACCAAAACCTCCAAACCCGCCGTCGA
GCCGACCACCACGTTTCAACCAACTCCGCGACAGCTTCCTCCCTTGGTGG
AGGGGGAAATGCTGCTGCAAGAGGCGAAAGCCCTCAGCTTTTTGTGGCAC
CGTGTCATGCAATCTGCCAGCAAGAGACCGAAATTAACTCGAAGTCTGCT
GATTCAAAGGACCGGAAGGTGGACGAGGACGTGGTAGGAAAAAAGAAGAA
CGACGACGAGATGGTCTCTATTACCATCCACCCGCCCGTCCTGACGCCAG
GGAAGATTACGGACATGACCAAGCAGCAGCAGACAGCAGGGGATAAAAGA
GACAGTGGTGGTAGGGTGAAGGAGAAGAAGGAGGCGGAGTGCGCTTCTAT
TCCCCCCATCGTAACCAGAGACATTCGCACGCAGAGCAGGCCTGCTGCCC
CGAAAAGCTGTACCTCTGCCAGTGAGGCCACGCACCAGCGACGGGCGAAA
AGGTCTCTGCCTCTTCCGAGCGCCCCTGTCTCTCGCATCCGCACGCGGCA
ATACGATAGGATGTTACCCATAGAGGACGAGACCATGGCCGAAGAAAGGG
AGACTGACATAGAGCCGAATGGGCTCCGGGTTGGTTTGTGCTTGGGCATG
ATTCGAATGACGGATAAATTTATGGAATGCTACGAGGGGTGCGCAGACCC
GATGCTGGACGTGGCTGCCGCAAGAGATACCTCGCGGATGCGAATTTTGG
AGAAAGAGGTAGGTGGAATGGAGGAAAGGGAGGACGCGGACGAAGGTTCT
CAATCGCTTTGTACGTGGGGGCCGCCATCGTGATACCGTCCATCCACCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGCTCTCTCTCTCAT
TCTCTATTTCACTAGACGGGCATGGATATAATCGCCTTATGCGACTCGCG
GGAGTTGAGAGGGGTGGACCACGGAGGCTTGGGAAGGCGGGAAAAGGGAA
AGCATGTCTCGGGACGATTTGAAAACCCGCCGCTGCGGGCTATCAAGGTA
AGAGTGACACGGGAGGAGGGAGAGCGGAGAATTATGACTGGCTCGGTTCA
AACTTCAAGACAGTACACGCAGACATTTGCCAAGCTTTTTCGCTCCATTT
CATTCACCCCACCTTCTCCTCTCCTCTCACACAGAGCGTGTTGGGGAAAC
GCAAGATCAGCTTTATCTTTGGAGACTACGTCCGCTTCCCCACTGCATAC
TTCAGGCCTGCCTACCGTGCCGTGGCCAATGTATTGCTACCTGCCTTGAG
GCGTTCAGGTCTGTTGGCGCCTGAATGTCAAGTGTATCTGCCTTTTCTCA
ACCTGTACGATGGCGTCGAAAATGTGTTTGAGAGGGTGATGGCCGATAGG
ACCATGGCACCTGTAATGGTGAGCGAGCGGGAAAATCCATTATATTGCGC
GACCAAGACGTTGTTTGACGAGGATCACGTACACAAATGTGAGGGATTGA
TGCCCGGAACGTCCTTCCTACGATTGACGATAAAATCCGATGAAAACTAA
TCGACTTACTTCATTTTAAGAGGGTGGTTTTATTCCTCGTGGAGATGACG
ATGACGTGTGTGTAAGAGAGAGACAGAGCGGAATGTGTGTTGTTTGATCG
AGACATTGAATGTGGCCACGTCTACCAGGGGAACGTAATGGGTGGGCTGG
ACGTGGATGGCATGCTGCGGCGCGTGTTTCGGGTTGTGACAGATCAAACG
AGCCCAGCGTGAAGTCTGCAAGAGTTCAAGAGCTCTATTTTAGCACGGAT
GTAAAAGAAGAGACAGGAGATGAAAGGGGGGGCGTGATGCTAGTGGATCC
CGCACGCAGCAGTTCACGTTCACATGTTCAACAATGGAAACGTTTGAAAA
TTAGCCACCACACACA

Coding sequence (CDS) from alignment at scaffold_8:267829..269844+

>mRNA_3868 ID=mRNA_3868|Name=jgi.p|Nanoce1779_2|585673|organism=Nannochloropsis oceanica|type=CDS|length=2280bp|location=Sequence derived from alignment at scaffold_8:267829..269844+ (Nannochloropsis oceanica)
ATGGGCGACGCGGACAATTACTACCAAAACCTCCAAACCCGCCGTCGAGC
CGACCACCACGTTTCAACCAACTCCGCGACAGCTTCCTCCCTTGGTGGAG
GGGGAAATGCTGCTGCAAGAGGCGAAAGCCCTCAGCTTTTTGTGGCACCG
TGTCATGCAATCTGCCAGCAAGAGACCGAAATTAACTCGAAGTCTGCTGA
TTCAAAGGACCGGAAGGTGGACGAGGACGTGGTAGGAAAAAAGAAGAACG
ACGACGAGATGGTCTCTATTACCATCCACCCGCCCGTCCTGACGCCAGGG
AAGATTACGGACATGACCAAGCAGCAGCAGACAGCAGGGGATAAAAGAGA
CAGTGGTGGTAGGGTGAAGGAGAAGAAGGAGGCGGAGTGCGCTTCTATTC
CCCCCATCGTAACCAGAGACATTCGCACGCAGAGCAGGCCTGCTGCCCCG
AAAAGCTGTACCTCTGCCAGTGAGGCCACGCACCAGCGACGGGCGAAAAG
GTCTCTGCCTCTTCCGAGCGCCCCTGTCTCTCGCATCCGCACGCGGCAAT
ACGATAGGATGTTACCCATAGAGGACGAGACCATGGCCGAAGAAAGGGAG
ACTGACATAGAGCCGAATGGGCTCCGGGTTGGTTTGTGCTTGGGCATGAT
TCGAATGACGGATAAATTTATGGAATGCTACGAGGGGTGCGCAGACCCGA
TGCTGGACGTGGCTGCCGCAAGAGATACCTCGCGGATGCGAATTTTGGAG
AAAGAGACGGGCATGGATATAATCGCCTTATGCGACTCGCGGGAGTTGAG
AGGGGTGGACCACGGAGGCTTGGGAAGGCGGGAAAAGGGAAAGCATGTCT
CGGGACGATTTGAAAACCCGCCGCTGCGGGCTATCAAGGTAAGAGTGACA
CGGGAGGAGGGAGAGCGGAGAATTATGACTGGCTCGGTTCAAACTTCAAG
ACAGTACACGCAGACATTTGCCAAGCTTTTTCGCTCCATTTCATTCACCC
CACCTTCTCCTCTCCTCTCACACAGAGCGTGTTGGGGAAACGCAAGATCA
GCTTTATCTTTGGAGACTACGTCCGCTTCCCCACTGCATACTTCAGGCCT
GCCTACCGTGCCGTGGCCAATGTATTGCTACCTGCCTTGAATGGGCGACG
CGGACAATTACTACCAAAACCTCCAAACCCGCCGTCGAGCCGACCACCAC
GTTTCAACCAACTCCGCGACAGCTTCCTCCCTTGGTGGAGGGGGAAATGC
TGCTGCAAGAGGCGAAAGCCCTCAGCTTTTTGTGGCACCGTGTCATGCAA
TCTGCCAGCAAGAGACCGAAATTAACTCGAAGTCTGCTGATTCAAAGGAC
CGGAAGGTGGACGAGGACGTGGTAGGAAAAAAGAAGAACGACGACGAGAT
GGTCTCTATTACCATCCACCCGCCCGTCCTGACGCCAGGGAAGATTACGG
ACATGACCAAGCAGCAGCAGACAGCAGGGGATAAAAGAGACAGTGGTGGT
AGGGTGAAGGAGAAGAAGGAGGCGGAGTGCGCTTCTATTCCCCCCATCGT
AACCAGAGACATTCGCACGCAGAGCAGGCCTGCTGCCCCGAAAAGCTGTA
CCTCTGCCAGTGAGGCCACGCACCAGCGACGGGCGAAAAGGTCTCTGCCT
CTTCCGAGCGCCCCTGTCTCTCGCATCCGCACGCGGCAATACGATAGGAT
GTTACCCATAGAGGACGAGACCATGGCCGAAGAAAGGGAGACTGACATAG
AGCCGAATGGGCTCCGGGTTGGTTTGTGCTTGGGCATGATTCGAATGACG
GATAAATTTATGGAATGCTACGAGGGGTGCGCAGACCCGATGCTGGACGT
GGCTGCCGCAAGAGATACCTCGCGGATGCGAATTTTGGAGAAAGAGACGG
GCATGGATATAATCGCCTTATGCGACTCGCGGGAGTTGAGAGGGGTGGAC
CACGGAGGCTTGGGAAGGCGGGAAAAGGGAAAGCATGTCTCGGGACGATT
TGAAAACCCGCCGCTGCGGGCTATCAAGGTAAGAGTGACACGGGAGGAGG
GAGAGCGGAGAATTATGACTGGCTCGGTTCAAACTTCAAGACAGTACACG
CAGACATTTGCCAAGCTTTTTCGCTCCATTTCATTCACCCCACCTTCTCC
TCTCCTCTCACACAGAGCGTGTTGGGGAAACGCAAGATCAGCTTTATCTT
TGGAGACTACGTCCGCTTCCCCACTGCATACTTCAGGCCTGCCTACCGTG
CCGTGGCCAATGTATTGCTACCTGCCTTGA

Synonyms

Publications