jgi.p|Nanoce1779_2|586378, mRNA_4066 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586378
Unique NamemRNA_4066
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1808
Alignment locationscaffold_8:754468..756275 -

Link to JBrowse

Properties
Property NameValue
TranscriptId586464
TrackFilteredModels2
ProteinId586378
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:754468..756275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586378gene_4066Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586378mRNA_4066-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4066CDS_4066Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4066 ID=mRNA_4066|Name=jgi.p|Nanoce1779_2|586378|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp
AGCGTGCACAGGACGCAAGCTGTTGGTCTAGGGACAGCAGCAGCAGCAGC
AGCAGCCGGTGGGCATCATATCATGCGGCGCGAGGATGAGGAAAACGCGC
ACTTGGTTCTGAATTCCAATCGCAGCGGAGCTAGTACGCAACACCCGCAG
TCTTACGGTGCCTTTGTGAAGAGCACGAACCGCAGCAGCCTAGACACGGC
CTCGCTCCGCGGAGATGGGACCAGCCTTCCATCATCGCGGCTGCCCCGGC
TTCGCGAGCATTGGCCCGTCATAATGGAAATGTTGGCCTCCTATGTCCTC
GGCCTGGCAGGGTACAGCAGCCACAGCAGTCCATGGACAATGGGGCTCGT
TTTTGCGGGGCTGGCACACGCGGCGTCGACGGCGTCTGTAAGCGGGGGGG
CGAGCGCGAGCGGCTCTTATTATGTGTGCGGTAATCCTCTCTTGACCATG
GGTCAGCTGTGTCGAGGATATGTCAGCCTCCCCCGCGCCGTGCTTTTTTG
GAGCGCGCAATTTTTGGGGATTACCCTCGCAACGCTTACTTACACTGTGA
ATAATGGCCAGGGTCATGCCCATGCCGCGGTACCAGGGGGGCTGGGGGTG
ATCACACCACTCACTTCCTGCCAGACTCAATCATGGGGGAATGCCCTATT
TCTCCTTTCCCTTTTCTCCAGCGCCTTCGTGTACGTCGGCTTGGCCGCGT
GGGATTCCATGGCATTAGCACTGGAAGCATGCTGCTCGTTCTACGGACTT
GCTACAGGTGCTGCATACGCCTCTGCTGTAGCCTCGGTTCAAAGTCGAGG
GATGGCCTCGGGTCTCCTCAATCCCTGGATGGGAGTCTTAGGCTTGATAT
ATCACGCTACTACCTCCCCCTCAGCCTCCTCCGCGTCTCCTATCGGTCTT
GCTGGACATTCGACCTCTCTTGCTCCAAGCAACATGGCATGCGATACACT
CTTCATCCTAGGTCCGATCCTCGGGGCCCTCCTTGGCGTTTTTCTCTCAT
GGCTAACCAGCTTAAATGGCAGCGAGAAAGAAAGTTTTCTGCGCTCACTC
TCACCAATAGCGCCCCTGCTCGTCGAGATGCTTGGAGTGATGTACCTCGT
CGTCACCCTCGGCGCAGCACACCGAGGCTGGACAACAGGTGCTCTAGCCC
TCGCCCTTACTCTTTGTGCATGGCGTCGGTCTGGCGCTCAGTTTAATTCG
AGTATCACTCTGGTGATATTCTTGTTGAAGAGGCAGATGTTTCGGTGGAC
TTCCCTTCTCTTTTATGTACTCGCCCATTTGGTTGGGGCGTTGCTGGGTG
TGTGTTTCCTCTTGCTTCTTCCACCGTCGAGGGACATGCCCCCCGTTTCT
ATCCTAGAAGAGCCTGTGGTGTTGGGAGCACGGAATGCACTGTTGCTCTT
TGCATTCACGACTGTGTATTTATGTGTGTTTGTGGCCAACACAGACGCGG
AGTATGATGAGGGCTTTCTGCATCCGGCTTTGATGGTGGGGCTGACGATG
ACAGGTTTATTAGGGGCCATGGCTTGCAACAGTGACGCGGATGTGTTAGA
GACCGGGCTTTTCAACCCAGCGGTGACTCTGGTGTTGTGGACCGCGTCGA
GAGCCAGGGTAGGGACGGTGTTGCTGGGGGTGGGGATGCAGTTGTTGGCG
ACTGCGGGGGCCTTTGGTATCTTTTGGGGGAACGCCCAGATGTCGTTGTG
AGGTAATAGGAGGGAGACAGGCAGGCAGGGAGGCAGGGAGGGAGGCAGGG
AAGGAGGCAGTAAGTTGTGTATGTACTTGATATGGATGCTGGGAAGTCAA
CTCAAGAG
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protein sequence of jgi.p|Nanoce1779_2|586378

>mRNA_4066-protein ID=mRNA_4066-protein|Name=jgi.p|Nanoce1779_2|586378|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MRREDEENAHLVLNSNRSGASTQHPQSYGAFVKSTNRSSLDTASLRGDGT
SLPSSRLPRLREHWPVIMEMLASYVLGLAGYSSHSSPWTMGLVFAGLAHA
ASTASVSGGASASGSYYVCGNPLLTMGQLCRGYVSLPRAVLFWSAQFLGI
TLATLTYTVNNGQGHAHAAVPGGLGVITPLTSCQTQSWGNALFLLSLFSS
AFVYVGLAAWDSMALALEACCSFYGLATGAAYASAVASVQSRGMASGLLN
PWMGVLGLIYHATTSPSASSASPIGLAGHSTSLAPSNMACDTLFILGPIL
GALLGVFLSWLTSLNGSEKESFLRSLSPIAPLLVEMLGVMYLVVTLGAAH
RGWTTGALALALTLCAWRRSGAQFNSSITLVIFLLKRQMFRWTSLLFYVL
AHLVGALLGVCFLLLLPPSRDMPPVSILEEPVVLGARNALLLFAFTTVYL
CVFVANTDAEYDEGFLHPALMVGLTMTGLLGAMACNSDADVLETGLFNPA
VTLVLWTASRARVGTVLLGVGMQLLATAGAFGIFWGNAQMSL*
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mRNA from alignment at scaffold_8:754468..756275-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4066 ID=mRNA_4066|Name=jgi.p|Nanoce1779_2|586378|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp|location=Sequence derived from alignment at scaffold_8:754468..756275- (Nannochloropsis oceanica)
AGCGTGCACAGGACGCAAGCTGTTGGTCTAGGGACAGCAGCAGCAGCAGC
AGCAGCCGGTGGGCATCATATCATGCGGCGCGAGGATGAGGAAAACGCGC
ACTTGGTTCTGAATTCCAATCGCAGCGGAGCTAGTACGCAACACCCGCAG
TCTTACGGTGCCTTTGTGAAGAGCACGAACCGCAGCAGCCTAGACACGGC
CTCGCTCCGCGGAGATGGGACCAGCCTTCCATCATCGCGGCTGCCCCGGC
TTCGCGAGCATTGGCCCGTCATAATGGAAATGTTGGCCTCCTATGTCCTC
GGCCTGGCAGGGTACAGCAGCCACAGCAGTCCATGGACAATGGGGCTCGT
TTTTGCGGGGCTGGCACACGCGGCGTCGACGGCGTCTGTAAGCGGGGGGG
CGAGCGCGAGCGGCTCTTATTATGTGTGCGGTAATCCTCTCTTGACCATG
GGTCAGCTGTGTCGAGGATATGTCAGCCTCCCCCGCGCCGTGCTTTTTTG
GAGCGCGCAATTTTTGGGGATTACCCTCGCAACGCTTACTTACACTGTGA
ATAATGGCCAGGGTCATGCCCATGCCGCGGTACCAGGGGGGCTGGGGGTG
ATCACACCACTCACTTCCTGCCAGACTCAATCATGGGGGAATGCCCTATT
TCTCCTTTCCCTTTTCTCCAGCGCCTTCGTGTACGTCGGCTTGGCCGCGT
GGGATTCCATGGCATTAGCACTGGAAGCATGCTGCTCGTTCTACGGACTT
GCTACAGGTGCTGCATACGCCTCTGCTGTAGCCTCGGTTCAAAGTCGAGG
GATGGCCTCGGGTCTCCTCAATCCCTGGATGGGAGTCTTAGGCTTGATAT
ATCACGCTACTACCTCCCCCTCAGCCTCCTCCGCGTCTCCTATCGGTCTT
GCTGGACATTCGACCTCTCTTGCTCCAAGCAACATGGCATGCGATACACT
CTTCATCCTAGGTCCGATCCTCGGGGCCCTCCTTGGCGTTTTTCTCTCAT
GGCTAACCAGCTTAAATGGCAGCGAGAAAGAAAGTTTTCTGCGCTCACTC
TCACCAATAGCGCCCCTGCTCGTCGAGATGCTTGGAGTGATGTACCTCGT
CGTCACCCTCGGCGCAGCACACCGAGGCTGGACAACAGGTGCTCTAGCCC
TCGCCCTTACTCTTTGTGCATGGCGTCGGTCTGGCGCTCAGTTTAATTCG
AGTATCACTCTGGTGATATTCTTGTTGAAGAGGCAGATGTTTCGGTGGAC
TTCCCTTCTCTTTTATGTACTCGCCCATTTGGTTGGGGCGTTGCTGGGTG
TGTGTTTCCTCTTGCTTCTTCCACCGTCGAGGGACATGCCCCCCGTTTCT
ATCCTAGAAGAGCCTGTGGTGTTGGGAGCACGGAATGCACTGTTGCTCTT
TGCATTCACGACTGTGTATTTATGTGTGTTTGTGGCCAACACAGACGCGG
AGTATGATGAGGGCTTTCTGCATCCGGCTTTGATGGTGGGGCTGACGATG
ACAGGTTTATTAGGGGCCATGGCTTGCAACAGTGACGCGGATGTGTTAGA
GACCGGGCTTTTCAACCCAGCGGTGACTCTGGTGTTGTGGACCGCGTCGA
GAGCCAGGGTAGGGACGGTGTTGCTGGGGGTGGGGATGCAGTTGTTGGCG
ACTGCGGGGGCCTTTGGTATCTTTTGGGGGAACGCCCAGATGTCGTTGTG
AGGTAATAGGAGGGAGACAGGCAGGCAGGGAGGCAGGGAGGGAGGCAGGG
AAGGAGGCAGTAAGTTGTGTATGTACTTGATATGGATGCTGGGAAGTCAA
CTCAAGAG
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Coding sequence (CDS) from alignment at scaffold_8:754468..756275-

>mRNA_4066 ID=mRNA_4066|Name=jgi.p|Nanoce1779_2|586378|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at scaffold_8:754468..756275- (Nannochloropsis oceanica)
ATGCGGCGCGAGGATGAGGAAAACGCGCACTTGGTTCTGAATTCCAATCG
CAGCGGAGCTAGTACGCAACACCCGCAGTCTTACGGTGCCTTTGTGAAGA
GCACGAACCGCAGCAGCCTAGACACGGCCTCGCTCCGCGGAGATGGGACC
AGCCTTCCATCATCGCGGCTGCCCCGGCTTCGCGAGCATTGGCCCGTCAT
AATGGAAATGTTGGCCTCCTATGTCCTCGGCCTGGCAGGGTACAGCAGCC
ACAGCAGTCCATGGACAATGGGGCTCGTTTTTGCGGGGCTGGCACACGCG
GCGTCGACGGCGTCTGTAAGCGGGGGGGCGAGCGCGAGCGGCTCTTATTA
TGTGTGCGGTAATCCTCTCTTGACCATGGGTCAGCTGTGTCGAGGATATG
TCAGCCTCCCCCGCGCCGTGCTTTTTTGGAGCGCGCAATTTTTGGGGATT
ACCCTCGCAACGCTTACTTACACTGTGAATAATGGCCAGGGTCATGCCCA
TGCCGCGGTACCAGGGGGGCTGGGGGTGATCACACCACTCACTTCCTGCC
AGACTCAATCATGGGGGAATGCCCTATTTCTCCTTTCCCTTTTCTCCAGC
GCCTTCGTGTACGTCGGCTTGGCCGCGTGGGATTCCATGGCATTAGCACT
GGAAGCATGCTGCTCGTTCTACGGACTTGCTACAGGTGCTGCATACGCCT
CTGCTGTAGCCTCGGTTCAAAGTCGAGGGATGGCCTCGGGTCTCCTCAAT
CCCTGGATGGGAGTCTTAGGCTTGATATATCACGCTACTACCTCCCCCTC
AGCCTCCTCCGCGTCTCCTATCGGTCTTGCTGGACATTCGACCTCTCTTG
CTCCAAGCAACATGGCATGCGATACACTCTTCATCCTAGGTCCGATCCTC
GGGGCCCTCCTTGGCGTTTTTCTCTCATGGCTAACCAGCTTAAATGGCAG
CGAGAAAGAAAGTTTTCTGCGCTCACTCTCACCAATAGCGCCCCTGCTCG
TCGAGATGCTTGGAGTGATGTACCTCGTCGTCACCCTCGGCGCAGCACAC
CGAGGCTGGACAACAGGTGCTCTAGCCCTCGCCCTTACTCTTTGTGCATG
GCGTCGGTCTGGCGCTCAGTTTAATTCGAGTATCACTCTGGTGATATTCT
TGTTGAAGAGGCAGATGTTTCGGTGGACTTCCCTTCTCTTTTATGTACTC
GCCCATTTGGTTGGGGCGTTGCTGGGTGTGTGTTTCCTCTTGCTTCTTCC
ACCGTCGAGGGACATGCCCCCCGTTTCTATCCTAGAAGAGCCTGTGGTGT
TGGGAGCACGGAATGCACTGTTGCTCTTTGCATTCACGACTGTGTATTTA
TGTGTGTTTGTGGCCAACACAGACGCGGAGTATGATGAGGGCTTTCTGCA
TCCGGCTTTGATGGTGGGGCTGACGATGACAGGTTTATTAGGGGCCATGG
CTTGCAACAGTGACGCGGATGTGTTAGAGACCGGGCTTTTCAACCCAGCG
GTGACTCTGGTGTTGTGGACCGCGTCGAGAGCCAGGGTAGGGACGGTGTT
GCTGGGGGTGGGGATGCAGTTGTTGGCGACTGCGGGGGCCTTTGGTATCT
TTTGGGGGAACGCCCAGATGTCGTTGTGA
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Synonyms
Publications