jgi.p|Nanoce1779_2|586636, mRNA_4126 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586636
Unique NamemRNA_4126
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1307
Alignment locationscaffold_8:896746..898191 -

Link to JBrowse

Properties
Property NameValue
TranscriptId586722
TrackFilteredModels2
ProteinId586636
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:896746..898191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586636gene_4126Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586636mRNA_4126-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4126CDS_4126Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4126 ID=mRNA_4126|Name=jgi.p|Nanoce1779_2|586636|organism=Nannochloropsis oceanica|type=mRNA|length=1307bp
CAGGTCAAGCACAACGAAACGAAGCAGTCCAAGACGACCACGGCTATAAT
TCCGAGGACATAGACGGTGCAATGGGGGGCAATCCCTTTCTGCACGAGCT
CTTGGCGGGTAAGTAAAGCTTATGTGTACAATTTCCCGACGTGAAGATCG
ATGTACTGTTATCCCACGAGTGTGTGGATAGAAATGTGCTATTATGCAAA
TCAAGTTATCACAAGCCTGGCAGACATGAGGATTTTCTTTCTTGTCCCAA
AGGTGACGTAAGCTCTCGTCCCTTGTACTTTTCTGTAAAGACCCGTCTCC
CCCACACCCTTCGCCCACTCCCTTACTCACTACCAAGGTACGGTGGGCGG
TGTCTTTGGCATCACCTTGATCTTCCCCCTCGACACTGCCAAGGTCCGGC
AACAAGCTTATCCGCATTACAAAGGCCCGCTGGACGTGATACGCTCCATG
GTCCGCGAGGGAGGCATCGGCTCGCTCTATCGTGGTCTTCTTAGCCCTCA
AGCCGGGTTTGGGGTGACGTTCGCCATCTCCTTTGCCGGTTATGGGCAAG
GGACGCGGTTCTTCCGCGAAGGAAACACGGAGCGGGATTTAACTTTGGGG
GAAATGACTGCGGCAGGGGCTTGGGCTGGTTTGTTGCAGAGTCCTTCGAG
ACAGGTGTTTGAGCGAGTCAAGTCGGTGATGCAAGTTCAAAAGGGAGGAG
GAGGGGGGGATAAAGCCCCTTATAAATGGTCGGGGGAATGCGTAGTTCAG
CTGGTTAAGAAGGAAGGGCTCTACAACGGCTTATTTCGGGGGTTGGATGC
CACGGTGTTGAGAGAGTTGCCGCAATTTGCTGTGTATTACCCGATTTACG
AACTCTCCGTCCGCGCTCTCAAGGAATTCCACGACACCTCCTCCTCCAGC
ACCCGGAAGCGGTCCTCCTCGACCCCCCTCCCTCCCCACCTCCTCCTCCT
TGCCGGTGGCATTGCCGGGACTCTCCAATGGCTTCCACCCTTCTATTGCA
TCGATGTGTTGAAGAGCAGAATGCAGAGTGCCTTGCCTGGAGTGTATTCG
TCCGTCTGGGATTGCGCTAAAAAGTCCTACCAAACTGAGGGGATCGGTGT
CTTTTTCCGGGGGCTGCCTGTGGCGCTGATAAGGGCATTTCCGCTGCATG
CCTGCATCTTCTTCGGATACGAGGTGACCTTGGCTGCTCTGCATGATGAG
GAGTTAGGAAGCATTTTGCCGCCGCCGGAGTAGGGATGAACGGAGAAAGG
GGGGGGCAAGAAAGAGGACATGTAAATACATATAAAAGAACTAACACTTG
GAGCAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|586636

>mRNA_4126-protein ID=mRNA_4126-protein|Name=jgi.p|Nanoce1779_2|586636|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MVREGGIGSLYRGLLSPQAGFGVTFAISFAGYGQGTRFFREGNTERDLTL
GEMTAAGAWAGLLQSPSRQVFERVKSVMQVQKGGGGGDKAPYKWSGECVV
QLVKKEGLYNGLFRGLDATVLRELPQFAVYYPIYELSVRALKEFHDTSSS
STRKRSSSTPLPPHLLLLAGGIAGTLQWLPPFYCIDVLKSRMQSALPGVY
SSVWDCAKKSYQTEGIGVFFRGLPVALIRAFPLHACIFFGYEVTLAALHD
EELGSILPPPE*
back to top

mRNA from alignment at scaffold_8:896746..898191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4126 ID=mRNA_4126|Name=jgi.p|Nanoce1779_2|586636|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp|location=Sequence derived from alignment at scaffold_8:896746..898191- (Nannochloropsis oceanica)
CAGGTCAAGCACAACGAAACGAAGCAGTCCAAGACGACCACGGCTATAAT
TCCGAGGACATAGACGGTGCAATGGGGGGCAATCCCTTTCTGCACGAGCT
CTTGGCGGGTAAGTAAAGCTTATGTGTACAATTTCCCGACGTGAAGATCG
ATGTACTGTTATCCCACGAGTGTGTGGATAGAAATGTGCTATTATGCAAA
TCAAGTTATCACAAGCCTGGCAGACATGAGGATTTTCTTTCTTGTCCCAA
AGGTGACGTAAGCTCTCGTCCCTTGTACTTTTCTGTAAAGACCCGTCTCC
CCCACACCCTTCGCCCACTCCCTTACTCACTACCAAGGTACGGTGGGCGG
TGTCTTTGGCATCACCTTGATCTTCCCCCTCGACACTGCCAAGGTCCGGC
AACAAGCTTATCCGCATTACAAAGGCCCGCTGGACGTGATACGCTCCATG
GTCCGCGAGGGAGGCATCGGCTCGCTCTATCGTGGTCTTCTTAGCCCTCA
AGCCGGGTTTGGGGTGACGTTCGCCATCTCCTTTGCCGGTTATGGGCAAG
GGACGCGGTTCTTCCGCGAAGGAAACACGGAGCGGGATTTAACTTTGGGG
GAAATGACTGCGGCAGGGGCTTGGGCTGGTTTGTTGCAGAGTCCTTCGAG
ACAGGTGTTTGAGCGAGTCAAGTCGGTGATGCAAGTTCAAAAGGGAGGAG
GAGGGGGGGATAAAGCCCCTTATAAATGGTCGGGGGAATGCGTAGTTCAG
CTGGTTAAGAAGGAAGGGCTCTACAACGGCTTATTTCGGGGGTTGGATGC
CACGGTGTTGAGAGAGTTGCCGCAATTTGCTGTGTATTACCCGATTGTAA
GATGTTGAAAAAGGGTGAAGGGAGGGCTGGGGGGAGACCGAAGAGAGGAT
ATACGACTCGTCCTCTTCCACCTGGGAGCATTTAGCTTACCTACCATTCC
ATTTTTTGTTTTCCCTCCCACCCTGTCTATACCAGTACGAACTCTCCGTC
CGCGCTCTCAAGGAATTCCACGACACCTCCTCCTCCAGCACCCGGAAGCG
GTCCTCCTCGACCCCCCTCCCTCCCCACCTCCTCCTCCTTGCCGGTGGCA
TTGCCGGGACTCTCCAATGGCTTCCACCCTTCTATTGCATCGATGTGTTG
AAGAGCAGAATGCAGAGTGCCTTGCCTGGAGTGTATTCGTCCGTCTGGGA
TTGCGCTAAAAAGTCCTACCAAACTGAGGGGATCGGTGTCTTTTTCCGGG
GGCTGCCTGTGGCGCTGATAAGGGCATTTCCGCTGCATGCCTGCATCTTC
TTCGGATACGAGGTGACCTTGGCTGCTCTGCATGATGAGGAGTTAGGAAG
CATTTTGCCGCCGCCGGAGTAGGGATGAACGGAGAAAGGGGGGGGCAAGA
AAGAGGACATGTAAATACATATAAAAGAACTAACACTTGGAGCAGG
back to top

Coding sequence (CDS) from alignment at scaffold_8:896746..898191-

>mRNA_4126 ID=mRNA_4126|Name=jgi.p|Nanoce1779_2|586636|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at scaffold_8:896746..898191- (Nannochloropsis oceanica)
TACGAACTCTCCGTCCGCGCTCTCAAGGAATTCCACGACACCTCCTCCTC
CAGCACCCGGAAGCGGTCCTCCTCGACCCCCCTCCCTCCCCACCTCCTCC
TCCTTGCCGGTGGCATTGCCGGGACTCTCCAATGGCTTCCACCCTTCTAT
TGCATCGATGTGTTGAAGAGCAGAATGCAGAGTGCCTTGCCTGGAGTGTA
TTCGTCCGTCTGGGATTGCGCTAAAAAGTCCTACCAAACTGAGGGGATCG
GTGTCTTTTTCCGGGGGCTGCCTGTGGCGCTGATAAGGGCATTTCCGCTG
CATGCCTGCATCTTCTTCGGATACGAGGTGACCTTGGCTGCTCTGCATGA
TGAGGAGTTAGGAAGCATTTTGCCGCCGCCGGAGTAGATGGTCCGCGAGG
GAGGCATCGGCTCGCTCTATCGTGGTCTTCTTAGCCCTCAAGCCGGGTTT
GGGGTGACGTTCGCCATCTCCTTTGCCGGTTATGGGCAAGGGACGCGGTT
CTTCCGCGAAGGAAACACGGAGCGGGATTTAACTTTGGGGGAAATGACTG
CGGCAGGGGCTTGGGCTGGTTTGTTGCAGAGTCCTTCGAGACAGGTGTTT
GAGCGAGTCAAGTCGGTGATGCAAGTTCAAAAGGGAGGAGGAGGGGGGGA
TAAAGCCCCTTATAAATGGTCGGGGGAATGCGTAGTTCAGCTGGTTAAGA
AGGAAGGGCTCTACAACGGCTTATTTCGGGGGTTGGATGCCACGGTGTTG
AGAGAGTTGCCGCAATTTGCTGTGTATTACCCGATTTACGAACTCTCCGT
CCGCGCTCTCAAGGAATTCCACGACACCTCCTCCTCCAGCACCCGGAAGC
GGTCCTCCTCGACCCCCCTCCCTCCCCACCTCCTCCTCCTTGCCGGTGGC
ATTGCCGGGACTCTCCAATGGCTTCCACCCTTCTATTGCATCGATGTGTT
GAAGAGCAGAATGCAGAGTGCCTTGCCTGGAGTGTATTCGTCCGTCTGGG
ATTGCGCTAAAAAGTCCTACCAAACTGAGGGGATCGGTGTCTTTTTCCGG
GGGCTGCCTGTGGCGCTGATAAGGGCATTTCCGCTGCATGCCTGCATCTT
CTTCGGATACGAGGTGACCTTGGCTGCTCTGCATGATGAGGAGTTAGGAA
GCATTTTGCCGCCGCCGGAGTAGATGGTCCGCGAGGGAGGCATCGGCTCG
CTCTATCGTGGTCTTCTTAGCCCTCAAGCCGGGTTTGGGGTGACGTTCGC
CATCTCCTTTGCCGGTTATGGGCAAGGGACGCGGTTCTTCCGCGAAGGAA
ACACGGAGCGGGATTTAACTTTGGGGGAAATGACTGCGGCAGGGGCTTGG
GCTGGTTTGTTGCAGAGTCCTTCGAGACAGGTGTTTGAGCGAGTCAAGTC
GGTGATGCAAGTTCAAAAGGGAGGAGGAGGGGGGGATAAAGCCCCTTATA
AATGGTCGGGGGAATGCGTAGTTCAGCTGGTTAAGAAGGAAGGGCTCTAC
AACGGCTTATTTCGGGGGTTGGATGCCACGGTGTTGAGAGAGTTGCCGCA
ATTTGCTGTGTATTACCCGATT
back to top
Synonyms
Publications