jgi.p|Nanoce1779_2|522189, mRNA_1357 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522189
Unique NamemRNA_1357
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length855
Alignment locationscaffold_1:374818..375672 +

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Properties
Property NameValue
TranscriptId522275
TrackFilteredModels2
ProteinId522189
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:374818..375672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522189gene_1357Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522189mRNA_1357-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1357CDS_1357Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1357 ID=mRNA_1357|Name=jgi.p|Nanoce1779_2|522189|organism=Nannochloropsis oceanica|type=mRNA|length=855bp
ATGACAACTAGTTACGATGACCGTCCCCAATCCGTGCGCGCCAGAGCTGC
CTATCTTGAGGTCATCAAAATGCACACGTCTGGGCTCGTTTACGGGTCTG
AAGAGCGTAGCGTTATGCAATCAGGAACGACTATTTCATTGAATACACTG
GATCCAGCCAAAAGGGGTTCGGGGCTCGATTGGACTTATCTAGGCGACAC
CATGACGGGAGGTGCGCGGCTCAACAACCTTAAATCATTACTTGAAGATG
TTTTTCTGCGTGGTATTTCAGGAGATTACATTGAAACTGGAGTATGGCGG
GGAGGATCGTCAATTTTTGCACGTGCTGTGATGCGAAGCTGCAACGAGGG
TCATCGAATGTCTTATGTTTGTGATTCTTTCCAAGGTCTTCCCCCTGGAG
ACAGAGCATTAGATCCTGGCGATAAGGGTTGGGATGTTGCGGGAGGGCAT
TATTTAAAGGTATCGGCTCCTACGGTGGCCGCTAATTTCCACGAGATGGG
CGTACTGGATCCAAATGTTGTGTTTGCCAAAGGTTTTTTTAATGAAACTA
TGGCACCTTTATCCTATCAAATTCAGACCTTGGCCATTATGCGTCTCGAT
GGTGACATGTACGAGTCTACTGTGGACGTTCTCTACAACTTGTATAGCAA
ACTCAGTGTGGGAGGATATGTAGTTATCGACGACTGGTTTGGATTCCCGG
CGCAGGCAGCCTGCGTTGATTTCTTCCGCGTGCATGGTATCAACCCTGAG
ATAATAAATATTGACGAAACAGCTGTGTACTGGCAAAAAACAGAGGAGGT
TGAGGTTCAGTATTGGCGGTATGAAAAAGGACTCTTCCGACTGAATTCAA
CGTAA
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protein sequence of jgi.p|Nanoce1779_2|522189

>mRNA_1357-protein ID=mRNA_1357-protein|Name=jgi.p|Nanoce1779_2|522189|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MTTSYDDRPQSVRARAAYLEVIKMHTSGLVYGSEERSVMQSGTTISLNTL
DPAKRGSGLDWTYLGDTMTGGARLNNLKSLLEDVFLRGISGDYIETGVWR
GGSSIFARAVMRSCNEGHRMSYVCDSFQGLPPGDRALDPGDKGWDVAGGH
YLKVSAPTVAANFHEMGVLDPNVVFAKGFFNETMAPLSYQIQTLAIMRLD
GDMYESTVDVLYNLYSKLSVGGYVVIDDWFGFPAQAACVDFFRVHGINPE
IINIDETAVYWQKTEEVEVQYWRYEKGLFRLNST*
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mRNA from alignment at scaffold_1:374818..375672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1357 ID=mRNA_1357|Name=jgi.p|Nanoce1779_2|522189|organism=Nannochloropsis oceanica|type=mRNA|length=855bp|location=Sequence derived from alignment at scaffold_1:374818..375672+ (Nannochloropsis oceanica)
ATGACAACTAGTTACGATGACCGTCCCCAATCCGTGCGCGCCAGAGCTGC
CTATCTTGAGGTCATCAAAATGCACACGTCTGGGCTCGTTTACGGGTCTG
AAGAGCGTAGCGTTATGCAATCAGGAACGACTATTTCATTGAATACACTG
GATCCAGCCAAAAGGGGTTCGGGGCTCGATTGGACTTATCTAGGCGACAC
CATGACGGGAGGTGCGCGGCTCAACAACCTTAAATCATTACTTGAAGATG
TTTTTCTGCGTGGTATTTCAGGAGATTACATTGAAACTGGAGTATGGCGG
GGAGGATCGTCAATTTTTGCACGTGCTGTGATGCGAAGCTGCAACGAGGG
TCATCGAATGTCTTATGTTTGTGATTCTTTCCAAGGTCTTCCCCCTGGAG
ACAGAGCATTAGATCCTGGCGATAAGGGTTGGGATGTTGCGGGAGGGCAT
TATTTAAAGGTATCGGCTCCTACGGTGGCCGCTAATTTCCACGAGATGGG
CGTACTGGATCCAAATGTTGTGTTTGCCAAAGGTTTTTTTAATGAAACTA
TGGCACCTTTATCCTATCAAATTCAGACCTTGGCCATTATGCGTCTCGAT
GGTGACATGTACGAGTCTACTGTGGACGTTCTCTACAACTTGTATAGCAA
ACTCAGTGTGGGAGGATATGTAGTTATCGACGACTGGTTTGGATTCCCGG
CGCAGGCAGCCTGCGTTGATTTCTTCCGCGTGCATGGTATCAACCCTGAG
ATAATAAATATTGACGAAACAGCTGTGTACTGGCAAAAAACAGAGGAGGT
TGAGGTTCAGTATTGGCGGTATGAAAAAGGACTCTTCCGACTGAATTCAA
CGTAA
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Coding sequence (CDS) from alignment at scaffold_1:374818..375672+

>mRNA_1357 ID=mRNA_1357|Name=jgi.p|Nanoce1779_2|522189|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold_1:374818..375672+ (Nannochloropsis oceanica)
ATGACAACTAGTTACGATGACCGTCCCCAATCCGTGCGCGCCAGAGCTGC
CTATCTTGAGGTCATCAAAATGCACACGTCTGGGCTCGTTTACGGGTCTG
AAGAGCGTAGCGTTATGCAATCAGGAACGACTATTTCATTGAATACACTG
GATCCAGCCAAAAGGGGTTCGGGGCTCGATTGGACTTATCTAGGCGACAC
CATGACGGGAGGTGCGCGGCTCAACAACCTTAAATCATTACTTGAAGATG
TTTTTCTGCGTGGTATTTCAGGAGATTACATTGAAACTGGAGTATGGCGG
GGAGGATCGTCAATTTTTGCACGTGCTGTGATGCGAAGCTGCAACGAGGG
TCATCGAATGTCTTATGTTTGTGATTCTTTCCAAGGTCTTCCCCCTGGAG
ACAGAGCATTAGATCCTGGCGATAAGGGTTGGGATGTTGCGGGAGGGCAT
TATTTAAAGGTATCGGCTCCTACGGTGGCCGCTAATTTCCACGAGATGGG
CGTACTGGATCCAAATGTTGTGTTTGCCAAAGGTTTTTTTAATGAAACTA
TGGCACCTTTATCCTATCAAATTCAGACCTTGGCCATTATGCGTCTCGAT
GGTGACATGTACGAGTCTACTGTGGACGTTCTCTACAACTTGTATAGCAA
ACTCAGTGTGGGAGGATATGTAGTTATCGACGACTGGTTTGGATTCCCGG
CGCAGGCAGCCTGCGTTGATTTCTTCCGCGTGCATGGTATCAACCCTGAG
ATAATAAATATTGACGAAACAGCTGTGTACTGGCAAAAAACAGAGGAGGT
TGAGGTTCAGTATTGGCGGTATGAAAAAGGACTCTTCCGACTGAATTCAA
CGTAA
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Synonyms
Publications