jgi.p|Nanoce1779_2|26166, mRNA_4517 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|26166
Unique Name	mRNA_4517
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1631
Alignment location	scaffold_10:792231..795160 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	26252
Track	FilteredModels2
ProteinId	26166

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:792231..795160 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|26166	gene_4517	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|26166	mRNA_4517-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4517	CDS_4517	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:792231..795160+
coding sequence from alignment at scaffold_10:792231..795160+

mRNA sequence

>mRNA_4517 ID=mRNA_4517|Name=jgi.p|Nanoce1779_2|26166|organism=Nannochloropsis oceanica|type=mRNA|length=1631bp
ACAGCAACACCTAGCAAATAACCCATTAATTAACATGGTCTTACGGCCCC
AGCGCCAACGCCGCGCGACGGCTGTGGCGGCCGCGGCAGCGGAGGAAAGG
GACGCGGCCGCTGCCTCCCTCGCTCCGTCCTCAGTGACGGGATCTAGTGC
CGCATTCAAAACTCCTATGAGTTTCCCCACGGCCTTCCCTAATCATCGCG
CTATGGAATGTAACGCAGGCAAATCAATCGTAGATATCACTGTCAAACCC
CGCTGTGTCGCCGTGACTTCGGGAAGCAGCAGCAATGGCGGCGCTGGGCG
GATCAAAGTCCCTCCCGAACCCTTCGTGCGTGAGGATGGGATCGGAACAC
AGAGTCATACAAGCTCCTCGTCCACCTCTCCCGCCTCCTTGGTGTCCTCC
TCCTCCACCTCCAAAAAGAGCCAGACACCCGAGTTCCTGGTTAAGCTGCA
TCGAATTCTTCTAAACGAAGACAAGGATATCATCTATTGGGACAACGGTC
AAATCCACGTCCGCAATCCCACCACCTTGGGTCAGAATGTCCTACACAAG
TACTTCCGCCACAGCAAGTACAGCTCTTTCCAGCGTCAGCTCAATTATTT
TGGGTTCCGGAAGACTCAGGGCAAGGGGAAGATGAGCGCATGCACGTACA
CGAACGTCCAGCTGTCGGGAGGGAACATTAAGAGCCTGTTGAACGTCAAG
AGGAAGAGCAGCACGGGCACGGGGGGCAAGGGCGAGGGGGAGGAAGGTGG
CGAGGAGGACCTGTCTTTGCTTGTGGAGGAGTTGGAGGAAGGGACGGACT
CCGACGGGGGAGAGTCTTCGGAAGGCTATACTCCCGTGACCGTTGGTCAG
GGCCTCAAGCGAGGGGCTCCCGTCTCCTTCTCTGCATCCTCCGCCTTGTC
CATGTCGTCCTTGTCTTCGGGTGGATCGGAGGGAGGGTTAATGGCGAGGA
AGCGTGTGCGGTCCTCTTCCTCGTCCTCGTCCTGCTCCTTGCGGGGAGGG
GGTGTCGTCTCCCTCGAAGAGAGTCTCGCGGCGGACGAGGGCTTGGAGGG
GGAGGAGGGAGGGGAGGAGGGCAGCCAAGGCAACACTTCTGCGGGTGCCC
TCTCTGGCTACTCATCCTCCTTGTCTGGGCAAGAAGAAGAGGAGGGGGAG
GAGGAGGAGGAGGAGGAGGACGAGGAGGAGGAGGACGAGGAGGACGAGGA
CGAGGAGGAGGAGGAGGCTCACAACATTTGGCGGGCTTGGTCATTTCATC
TCCCTCCCTCCCTCGCTCTCTCAGTCCCTTGCATGGAGAACAAGGCTTTG
AATCAAGAAAGCATGTACACTTACTTTCACCCATAAACCGCGGCATCCCG
AAATAAAGAACATGAGAAGAAGAAAAAAAGTAGAGAATCAGAGAATCTCG
ATACTCGATAGGCATGAAGAGAGGTCTGGCTAAAGAACCATGAGTAGATA
GTCACAGCAAGAATTAGCGAGGCCAAGCGACGAGAGGGAGTGATGGAAAA
GACGGGGGATGTAGGGTACGAGAAACACCGCAAGTATTACGACAAGAAGG
ATGCTTCGACCATGGTCTGCTCGGGAGGTGATAGAGGGCAGGCGGATGTA
TGCACCCCATTTTTAGAACGCGTGTAGGCGT

protein sequence of jgi.p|Nanoce1779_2|26166

>mRNA_4517-protein ID=mRNA_4517-protein|Name=jgi.p|Nanoce1779_2|26166|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MVLRPQRQRRATAVAAAAAEERDAAAASLAPSSVTGSSAAFKTPMSFPTA
FPNHRAMECNAGKSIVDITVKPRCVAVTSGSSSNGGAGRIKVPPEPFVRE
DGIGTQSHTSSSSTSPASLVSSSSTSKKSQTPEFLVKLHRILLNEDKDII
YWDNGQIHVRNPTTLGQNVLHKYFRHSKYSSFQRQLNYFGFRKTQGKGKM
SACTYTNVQLSGGNIKSLLNVKRKSSTGTGGKGEGEEGGEEDLSLLVEEL
EEGTDSDGGESSEGYTPVTVGQGLKRGAPVSFSASSALSMSSLSSGGSEG
GLMARKRVRSSSSSSSCSLRGGGVVSLEESLAADEGLEGEEGGEEGSQGN
TSAGALSGYSSSLSGQEEEEGEEEEEEEDEEEEDEEDEDEEEEEAHNIWR
AWSFHLPPSLALSVPCMENKALNQESMYTYFHP*

mRNA from alignment at scaffold_10:792231..795160+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4517 ID=mRNA_4517|Name=jgi.p|Nanoce1779_2|26166|organism=Nannochloropsis oceanica|type=mRNA|length=2930bp|location=Sequence derived from alignment at scaffold_10:792231..795160+ (Nannochloropsis oceanica)
ACAGCAACACCTAGCAAATAACCCATTAATTAACATGGTCTTACGGCCCC
AGCGCCAACGCCGCGCGACGGCTGTGGCGGCCGCGGCAGCGGAGGAAAGG
GACGCGGCCGCTGCCTCCCTCGCTCCGTCCTCAGTGACGGGATCTAGTGC
CGCATTCAAAACTCCTATGAGTTTCCCCACGGCCTTCCCTAATCATCGCG
CTATGGAATGTAACGCAGGCAAATCAATCGTAGATATCACTGTCAAACCC
CGCTGTGTCGCCGTGACTTCGGGAAGCAGCAGCAATGGCGGCGCTGGGCG
GATCAAAGTCCCTCCCGAACCCTTCGTGCGTGAGGATGGGATCGGAACAC
AGAGTCATACAAGCTCCTCGTCCACCTCTCCCGCCTCCTTGGTGTCCTCC
TCCTCCACCTCCAAAAAGAGCCAGACACCCGAGTTCCTGGTTAAGCTGCA
TCGAATTCTTCTAAACGAAGACAAGGATATCATCTATTGGGACAACGGTG
AGTGAATCGAACAAGCCTCCCCAAAAAATGTGCCGCCGCGGACAAAAATA
GAAAAAGTCCAAGGGAGTGATCTGAAGACAGGGCGTTTCCAATACTGACA
TCACATTGAGCGTGTGCGTGCGATTCCACATTTTGAGGCCGGCATTAATT
ACCGCAAAAAATCGATCTATGGGATCTCTATTCGCATGTTCCGGACTTCT
TCTAAGCCAAGCAACATCTCTACCCTCCTCACATAATTCCCCTCCCCTAA
TTCATGTGTGACCCTGTGCTTTCTATGAAGCCGCAGCTCTGCCGCCTTCT
CTCATCAACCCCCCTACCTCCCCCACGCCCTTCCTCCTCCCACCCCCATT
CCTCTTGCAGGTCAAATCCACGTCCGCAATCCCACCACCTTGGGTCAGAA
TGTCCTACACAAGTACTTCCGCCACAGCAAGTACAGCTCTTTCCAGCGTC
AGCTCAATTATTTTGGGTTCCGGAAGACTCAGGGCAAGGGGAAGATGAGC
GCATGCACGTACACGAACGTCCAGCTGTCGGGAGGGAACATTAAGAGCCT
GTTGAACGTCAAGAGGAAGAGCAGCACGGGCACGGGGGGCAAGGGCGAGG
GGGAGGAAGGTGGCGAGGAGGACCTGTCTTTGCTTGTGGAGGAGTTGGAG
GAAGGGACGGACTCCGACGGGGGAGAGTCTTCGGAAGGCTATACTCCCGT
GACCGTTGGTCAGGGCCTCAAGCGAGGGGCTCCCGTCTCCTTCTCTGCAT
CCTCCGCCTTGTCCATGTCGTCCTTGTCTTCGGGTGGATCGGAGGGAGGG
TTAATGGCGAGGAAGCGTGTGCGGTCCTCTTCCTCGTCCTCGTCCTGCTC
CTTGCGGGGAGGGGGTGTCGTCTCCCTCGAAGAGAGTCTCGCGGCGGACG
AGGGCTTGGAGGGGGAGGAGGGAGGGGAGGAGGGCAGCCAAGGCAACACT
TCTGCGGGTGCCCTCTCTGGCTACTCATCCTCCTTGTCTGGGCAAGAAGA
AGAGGAGGGGGAGGAGGAGGAGGACTATGGGGAGGACGAGGACGAGGACG
GGCACGACGCCTATCACTCGTTTCCTCCCTCGCAAGCAGCCAAGCATCGT
CAGTCGCACCTTCACCTCCACCTCCCACCCCACCACCACCACCAGGAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCTACCCCTCCGACAGGGCGGTC
ATCGCCTTTCCTTCACTCTCGCCGGCGGCCTCCGCACCTCCCATGCCTGC
CCGAACCCCTCCACTTCAATCACCCTCTCCTCGGGTAGCACCACTACCAC
CACAGCGACCAGCAGCAACAGCAGCAGCAGCAGCAAAAGCCTGAAGCCGC
TTGACGTCAATGCCCTGCCCACCTTCTCCACTGACGTGCTCCCCGCCCCC
TCTCCTCGCGGGGCGGACGATTTTTTCCCCTCCTACCTTACTGCCTTCGA
CCCTCTAGGCGACTCGGCCTCCTCTCCCTGGGCGTGGGCAGAGCCCCCTG
TCAATGGGAGCCTCTCGTCGTTGTCTCTCGAAACAGGGTGCGGCATGACC
TCTCTGAATTCCCTCGATGAGGGCCACAGCAACCACTCAGCTTTTGCCCG
GGACGAGGACAAGGGAGGGGCCAGTGGAGGAAGGGAAGGAGGGAGGGAGA
GGGAAGTTCTGGCGTCCATGCCGTCGGCAGCGGCGATTGCGGCCGCGGCT
CTGTGTAGCCCCCGGGGGGAGAGTGCGTTTTTGCTGAGTGTGGAAGGAGG
GGGAGGGGCGACCGATTTCTGGGGTGGGGGGGCCTCGTCTGCCTCTTCGT
GATAGTCGTGGAGGAGGAAGGAGAAAAGCCGTAGTCGCAGCACTCACAGC
AGCAGATTGATGAGGTAAAAGATTTATGAGGAACTCTTCCGCTGGATAAG
AAGAGAATCAGAAAGGAAGAAGGAGGTTGGCTGGTACGTAAAGGAATCTG
ATATTGAGGAGGAGGAGGACGAGGAGGAGGAGGACGAGGAGGACGAGGAC
GAGGAGGAGGAGGAGGCTCACAACATTTGGCGGGCTTGGTCATTTCATCT
CCCTCCCTCCCTCGCTCTCTCAGTCCCTTGCATGGAGAACAAGGCTTTGA
ATCAAGAAAGCATGTACACTTACTTTCACCCATAAACCGCGGCATCCCGA
AATAAAGAACATGAGAAGAAGAAAAAAAGTAGAGAATCAGAGAATCTCGA
TACTCGATAGGCATGAAGAGAGGTCTGGCTAAAGAACCATGAGTAGATAG
TCACAGCAAGAATTAGCGAGGCCAAGCGACGAGAGGGAGTGATGGAAAAG
ACGGGGGATGTAGGGTACGAGAAACACCGCAAGTATTACGACAAGAAGGA
TGCTTCGACCATGGTCTGCTCGGGAGGTGATAGAGGGCAGGCGGATGTAT
GCACCCCATTTTTAGAACGCGTGTAGGCGT

Coding sequence (CDS) from alignment at scaffold_10:792231..795160+

>mRNA_4517 ID=mRNA_4517|Name=jgi.p|Nanoce1779_2|26166|organism=Nannochloropsis oceanica|type=CDS|length=3906bp|location=Sequence derived from alignment at scaffold_10:792231..795160+ (Nannochloropsis oceanica)
ATGGTCTTACGGCCCCAGCGCCAACGCCGCGCGACGGCTGTGGCGGCCGC
GGCAGCGGAGGAAAGGGACGCGGCCGCTGCCTCCCTCGCTCCGTCCTCAG
TGACGGGATCTAGTGCCGCATTCAAAACTCCTATGAGTTTCCCCACGGCC
TTCCCTAATCATCGCGCTATGGAATGTAACGCAGGCAAATCAATCGTAGA
TATCACTGTCAAACCCCGCTGTGTCGCCGTGACTTCGGGAAGCAGCAGCA
ATGGCGGCGCTGGGCGGATCAAAGTCCCTCCCGAACCCTTCGTGCGTGAG
GATGGGATCGGAACACAGAGTCATACAAGCTCCTCGTCCACCTCTCCCGC
CTCCTTGGTGTCCTCCTCCTCCACCTCCAAAAAGAGCCAGACACCCGAGT
TCCTGGTTAAGCTGCATCGAATTCTTCTAAACGAAGACAAGGATATCATC
TATTGGGACAACGGTCAAATCCACGTCCGCAATCCCACCACCTTGGGTCA
GAATGTCCTACACAAGTACTTCCGCCACAGCAAGTACAGCTCTTTCCAGC
GTCAGCTCAATTATTTTGGGTTCCGGAAGACTCAGGGCAAGGGGAAGATG
AGCGCATGCACGTACACGAACGTCCAGCTGTCGGGAGGGAACATTAAGAG
CCTGTTGAACGTCAAGAGGAAGAGCAGCACGGGCACGGGGGGCAAGGGCG
AGGGGGAGGAAGGTGGCGAGGAGGACCTGTCTTTGCTTGTGGAGGAGTTG
GAGGAAGGGACGGACTCCGACGGGGGAGAGTCTTCGGAAGGCTATACTCC
CGTGACCGTTGGTCAGGGCCTCAAGCGAGGGGCTCCCGTCTCCTTCTCTG
CATCCTCCGCCTTGTCCATGTCGTCCTTGTCTTCGGGTGGATCGGAGGGA
GGGTTAATGGCGAGGAAGCGTGTGCGGTCCTCTTCCTCGTCCTCGTCCTG
CTCCTTGCGGGGAGGGGGTGTCGTCTCCCTCGAAGAGAGTCTCGCGGCGG
ACGAGGGCTTGGAGGGGGAGGAGGGAGGGGAGGAGGGCAGCCAAGGCAAC
ACTTCTGCGGGTGCCCTCTCTGGCTACTCATCCTCCTTGTCTGGGCAAGA
AGAAGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGACGAGGAGGAGGAGG
ACGAGGAGGACGAGGACGAGGAGGAGGAGGAGGCTCACAACATTTGGCGG
GCTTGGTCATTTCATCTCCCTCCCTCCCTCGCTCTCTCAGTCCCTTGCAT
GGAGAACAAGGCTTTGAATCAAGAAAGCATGTACACTTACTTTCACCCAT
AAATGGTCTTACGGCCCCAGCGCCAACGCCGCGCGACGGCTGTGGCGGCC
GCGGCAGCGGAGGAAAGGGACGCGGCCGCTGCCTCCCTCGCTCCGTCCTC
AGTGACGGGATCTAGTGCCGCATTCAAAACTCCTATGAGTTTCCCCACGG
CCTTCCCTAATCATCGCGCTATGGAATGTAACGCAGGCAAATCAATCGTA
GATATCACTGTCAAACCCCGCTGTGTCGCCGTGACTTCGGGAAGCAGCAG
CAATGGCGGCGCTGGGCGGATCAAAGTCCCTCCCGAACCCTTCGTGCGTG
AGGATGGGATCGGAACACAGAGTCATACAAGCTCCTCGTCCACCTCTCCC
GCCTCCTTGGTGTCCTCCTCCTCCACCTCCAAAAAGAGCCAGACACCCGA
GTTCCTGGTTAAGCTGCATCGAATTCTTCTAAACGAAGACAAGGATATCA
TCTATTGGGACAACGGTCAAATCCACGTCCGCAATCCCACCACCTTGGGT
CAGAATGTCCTACACAAGTACTTCCGCCACAGCAAGTACAGCTCTTTCCA
GCGTCAGCTCAATTATTTTGGGTTCCGGAAGACTCAGGGCAAGGGGAAGA
TGAGCGCATGCACGTACACGAACGTCCAGCTGTCGGGAGGGAACATTAAG
AGCCTGTTGAACGTCAAGAGGAAGAGCAGCACGGGCACGGGGGGCAAGGG
CGAGGGGGAGGAAGGTGGCGAGGAGGACCTGTCTTTGCTTGTGGAGGAGT
TGGAGGAAGGGACGGACTCCGACGGGGGAGAGTCTTCGGAAGGCTATACT
CCCGTGACCGTTGGTCAGGGCCTCAAGCGAGGGGCTCCCGTCTCCTTCTC
TGCATCCTCCGCCTTGTCCATGTCGTCCTTGTCTTCGGGTGGATCGGAGG
GAGGGTTAATGGCGAGGAAGCGTGTGCGGTCCTCTTCCTCGTCCTCGTCC
TGCTCCTTGCGGGGAGGGGGTGTCGTCTCCCTCGAAGAGAGTCTCGCGGC
GGACGAGGGCTTGGAGGGGGAGGAGGGAGGGGAGGAGGGCAGCCAAGGCA
ACACTTCTGCGGGTGCCCTCTCTGGCTACTCATCCTCCTTGTCTGGGCAA
GAAGAAGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGACGAGGAGGAGGA
GGACGAGGAGGACGAGGACGAGGAGGAGGAGGAGGCTCACAACATTTGGC
GGGCTTGGTCATTTCATCTCCCTCCCTCCCTCGCTCTCTCAGTCCCTTGC
ATGGAGAACAAGGCTTTGAATCAAGAAAGCATGTACACTTACTTTCACCC
ATAAATGGTCTTACGGCCCCAGCGCCAACGCCGCGCGACGGCTGTGGCGG
CCGCGGCAGCGGAGGAAAGGGACGCGGCCGCTGCCTCCCTCGCTCCGTCC
TCAGTGACGGGATCTAGTGCCGCATTCAAAACTCCTATGAGTTTCCCCAC
GGCCTTCCCTAATCATCGCGCTATGGAATGTAACGCAGGCAAATCAATCG
TAGATATCACTGTCAAACCCCGCTGTGTCGCCGTGACTTCGGGAAGCAGC
AGCAATGGCGGCGCTGGGCGGATCAAAGTCCCTCCCGAACCCTTCGTGCG
TGAGGATGGGATCGGAACACAGAGTCATACAAGCTCCTCGTCCACCTCTC
CCGCCTCCTTGGTGTCCTCCTCCTCCACCTCCAAAAAGAGCCAGACACCC
GAGTTCCTGGTTAAGCTGCATCGAATTCTTCTAAACGAAGACAAGGATAT
CATCTATTGGGACAACGGTCAAATCCACGTCCGCAATCCCACCACCTTGG
GTCAGAATGTCCTACACAAGTACTTCCGCCACAGCAAGTACAGCTCTTTC
CAGCGTCAGCTCAATTATTTTGGGTTCCGGAAGACTCAGGGCAAGGGGAA
GATGAGCGCATGCACGTACACGAACGTCCAGCTGTCGGGAGGGAACATTA
AGAGCCTGTTGAACGTCAAGAGGAAGAGCAGCACGGGCACGGGGGGCAAG
GGCGAGGGGGAGGAAGGTGGCGAGGAGGACCTGTCTTTGCTTGTGGAGGA
GTTGGAGGAAGGGACGGACTCCGACGGGGGAGAGTCTTCGGAAGGCTATA
CTCCCGTGACCGTTGGTCAGGGCCTCAAGCGAGGGGCTCCCGTCTCCTTC
TCTGCATCCTCCGCCTTGTCCATGTCGTCCTTGTCTTCGGGTGGATCGGA
GGGAGGGTTAATGGCGAGGAAGCGTGTGCGGTCCTCTTCCTCGTCCTCGT
CCTGCTCCTTGCGGGGAGGGGGTGTCGTCTCCCTCGAAGAGAGTCTCGCG
GCGGACGAGGGCTTGGAGGGGGAGGAGGGAGGGGAGGAGGGCAGCCAAGG
CAACACTTCTGCGGGTGCCCTCTCTGGCTACTCATCCTCCTTGTCTGGGC
AAGAAGAAGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGACGAGGAGGAG
GAGGACGAGGAGGACGAGGACGAGGAGGAGGAGGAGGCTCACAACATTTG
GCGGGCTTGGTCATTTCATCTCCCTCCCTCCCTCGCTCTCTCAGTCCCTT
GCATGGAGAACAAGGCTTTGAATCAAGAAAGCATGTACACTTACTTTCAC
CCATAA

Synonyms

Publications